Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009048

Physical Location & Seq

Genomic Coordinates Forward (+)

2462363 .. 2464695

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G035200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCCTTCATTTCGTTCGTTGGAAGGCTTCTCTTCGTCTCTGTCTTCCTTCTCTCTGCTTGGCAAGAGTTCAGTGAATTTGGTGTGGATGGGGGACCCGCAGCCAAGTCTCTGAGACCCAAGTTCGATATTTTCTGGAATCATCTATCAACTCACACTGGTCTGAAAGAGCCCAAACAATTTGAAATCCAACATTTACTGGCGGCCACAATAGCCTTGAAGGGCATTGGGGGTCTTCTCTTCATCCTTGGTTCTTCTCTTGGAGCCTATCTGCTGCTTCTGCATCAGGCCATCGCCACTCCTATCTTGTACGACTTCTACAACTATGATCCTGAGAAGACCGAATTCAATCAACTTTTCCTCAAGTTTACCCAGAATTTGGCATTCTTTGGGGCTCTGCTGTTTTTCATAAGCATGAAGGCGTCGATACCAAAGAGGCAACTCAGAAAAAGAGCTCCCAAAGCAAAAACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HR_lesion

Protein Analysis

159

Amino Acids

17.82

Weight (kDa)

9.77

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14420
fragaria_vesca	FvH4_4g03230 FvH4_4g03230
malus_domestica	MD13G1210800.v1.1 MD16G1214000.v1.1
prunus_persica	Prupe.1G035200_v2.0.a1 Prupe.1G035200_v2.0.a1 Prupe.8G226100_v2.0.a1 Prupe.8G226100_v2.0.a1
pyrus_communis	pycom13g18330 pycom16g17980
rosa_chinensis	RchiOBHm_Chr4g0391911
rosa_laevigata	RLG00000009850
rosa_multiflora	Rmu_sc0000383.1_g000009
rosa_roxburghii	Rroxscaffold_5G00337200
rosa_rugosa	Rorug03G0336900 Rorug03G0337000
rosa_samantha	Rh4AG039200 Rh4BG033900 Rh4CG041900 Rh4DG036800
rosa_wichuraiana	Rw4G003060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	379
AciI	CCGC	2 cut(s)	99, 203
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	3 cut(s)	77, 344, 376
AcyI	GRCGYC	1 cut(s)	422
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	185, 220, 349
AluBI	AGCT	1 cut(s)	455
AluI	AGCT	1 cut(s)	455
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	3 cut(s)	43, 109, 114
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	3 cut(s)	3, 204, 288
ApeKI	GCWGC	2 cut(s)	101, 274
ApoI	RAATTY	3 cut(s)	77, 344, 376
AspS9I	GGNCC	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	95
BanII	GRGCYC	3 cut(s)	174, 397, 457
BbsI	GAAGAC	3 cut(s)	37, 227, 344
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	113, 261
BccI	CCATC	2 cut(s)	83, 299
BcoDI	GTCTC	3 cut(s)	43, 109, 114
BisI	GCNGC	3 cut(s)	102, 204, 275
BlsI	GCNGC	3 cut(s)	103, 205, 276
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	3 cut(s)	96, 97, 265
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	3 cut(s)	37, 227, 344
BpuEI	CTTGAG	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	163, 204
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	94, 243
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	3 cut(s)	104, 324, 457
BseNI	ACTGG	2 cut(s)	163, 204
BseXI	GCAGC	2 cut(s)	113, 261
BshFI	GGCC	3 cut(s)	5, 206, 290
BsiHKAI	GWGCWC	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	3 cut(s)	43, 109, 114
BsmBI	CGTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	3 cut(s)	5, 206, 290
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	3 cut(s)	174, 397, 457
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	2 cut(s)	99, 203
BspANI	GGCC	3 cut(s)	5, 206, 290
BspCNI	CTCAG	3 cut(s)	105, 325, 456
BspLI	GGNNCC	3 cut(s)	96, 97, 265
BspPI	GGATC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	163, 204
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	422
BssT1I	CCWWGG	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	38, 245
BstACI	GRCGYC	1 cut(s)	422
BstDEI	CTNAG	3 cut(s)	113, 333, 443
BstF5I	GGATG	2 cut(s)	94, 243
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	3 cut(s)	43, 109, 114
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 280, 461
BstV1I	GCAGC	2 cut(s)	113, 261
BstV2I	GAAGAC	3 cut(s)	37, 227, 344
BsuRI	GGCC	3 cut(s)	5, 206, 290
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	94, 243
BtsIMutI	CAGTG	2 cut(s)	79, 156
Cfr13I	GGNCC	1 cut(s)	95
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	415, 474
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	3 cut(s)	113, 333, 443
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	38, 245
EarI	CTCTTC	2 cut(s)	38, 245
Ecl136II	GAGCTC	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	247
Eco24I	GRGCYC	3 cut(s)	174, 397, 457
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	247
EcoT38I	GRGCYC	3 cut(s)	174, 397, 457
ErhI	CCWWGG	1 cut(s)	247
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	2 cut(s)	418, 477
FaiI	YATR	4 cut(s)	327, 410, 416, 475
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	2 cut(s)	414, 473
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	102, 204, 275
FokI	GGATG	2 cut(s)	101, 230
FriOI	GRGCYC	3 cut(s)	174, 397, 457
Fsp4HI	GCNGC	3 cut(s)	102, 204, 275
GluI	GCNGC	3 cut(s)	102, 204, 275
HaeIII	GGCC	3 cut(s)	5, 206, 290
HgaI	GACGC	1 cut(s)	411
Hin1I	GRCGYC	1 cut(s)	422
Hin1II	CATG	2 cut(s)	418, 477
HinfI	GANTC	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	3 cut(s)	114, 165, 446
Hpy188III	TCNNGA	2 cut(s)	136, 332
Hpy8I	GTNNAC	1 cut(s)	369
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	5 cut(s)	16, 18, 59, 214, 412
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 280, 461
HpyF3I	CTNAG	3 cut(s)	113, 333, 443
Hsp92I	GRCGYC	1 cut(s)	422
Hsp92II	CATG	2 cut(s)	418, 477
KflI	GGGWCCC	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	263, 460
LpnPI	CCDG	6 cut(s)	121, 144, 185, 272, 345, 386
Lsp1109I	GCAGC	2 cut(s)	113, 261
LweI	GCATC	1 cut(s)	292
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	6 cut(s)	25, 37, 227, 232, 246, 349
MhlI	GDGCHC	3 cut(s)	174, 397, 457
MluCI	AATT	4 cut(s)	77, 179, 344, 376
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	371, 429
MslI	CAYNNNNRTG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	212, 280, 461
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	2 cut(s)	418, 477
NlaIV	GGNNCC	3 cut(s)	96, 97, 265
PctI	GAATGC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	103, 205, 276
PpuMI	RGGWCCY	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	457
Psp5II	RGGWCCY	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	96, 97, 265
PspPI	GGNCC	1 cut(s)	95
PspPPI	RGGWCCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	457
SatI	GCNGC	3 cut(s)	102, 204, 275
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	95
SduI	GDGCHC	3 cut(s)	174, 397, 457
SetI	ASST	1 cut(s)	457
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	77, 179, 344, 376
SsiI	CCGC	2 cut(s)	99, 203
SstI	GAGCTC	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	247
TaqI	TCGA	2 cut(s)	126, 425
TaqII	GACCGA	1 cut(s)	356
TasI	AATT	4 cut(s)	77, 179, 344, 376
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	139
TscAI	CASTG	2 cut(s)	79, 163
TseI	GCWGC	2 cut(s)	101, 274
TspDTI	ATGAA	3 cut(s)	232, 397, 431
TspRI	CASTG	2 cut(s)	79, 163
Van91I	CCANNNNNTGG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	3 cut(s)	77, 344, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.