Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000383.1

Orthogroup ID

OG0009048

Physical Location & Seq

Genomic Coordinates Reverse (-)

42049 .. 43634

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000383.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggccttcgtttcctccgctgggaggctccttttcgcctccgtcttccttctctccgcttggcaagagttcaatgaatttggttcggatgggggacctgcagctaagtatttgagaccaaagctcgatgttttctcgagccatctgttagctcataccggtgtgcaagtgccgaagcaagttgagcagattaagcatttagtggcggcggcgattgtcttgaagggtgtcgggggtgttcttttcatctttggaagtactctcggagctgttctgctgcttctgcatcaggccattgcaactcctatattgtatgacttctacaactatgatgcggagaaaaaagaattcaatcaacttttcctcaagtttacccagaatttggcattgtttggggctctgctctttttcataagcatgaagatatcaatgccaaagagactcaggaaaagagctcccaaagctaaaactacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HR_lesion

Protein Analysis

158

Amino Acids

17.48

Weight (kDa)

9.94

Isoelectric Point (pI)

29.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14420
fragaria_vesca	FvH4_4g03230 FvH4_4g03230
malus_domestica	MD13G1210800.v1.1 MD16G1214000.v1.1
prunus_persica	Prupe.1G035200_v2.0.a1 Prupe.1G035200_v2.0.a1 Prupe.8G226100_v2.0.a1 Prupe.8G226100_v2.0.a1
pyrus_communis	pycom13g18330 pycom16g17980
rosa_chinensis	RchiOBHm_Chr4g0391911
rosa_laevigata	RLG00000009850
rosa_multiflora	Rmu_sc0000383.1_g000009
rosa_roxburghii	Rroxscaffold_5G00337200
rosa_rugosa	Rorug03G0336900 Rorug03G0337000
rosa_samantha	Rh4AG039200 Rh4BG033900 Rh4CG041900 Rh4DG036800
rosa_wichuraiana	Rw4G003060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	382
AciI	CCGC	5 cut(s)	18, 57, 206, 209, 335
AcsI	RAATTY	3 cut(s)	77, 347, 379
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	3 cut(s)	21, 24, 382
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	73, 223, 352
AluBI	AGCT	6 cut(s)	104, 124, 152, 269, 455, 464
AluI	AGCT	6 cut(s)	104, 124, 152, 269, 455, 464
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	109, 433
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	2 cut(s)	3, 291
ApeKI	GCWGC	2 cut(s)	101, 277
ApoI	RAATTY	3 cut(s)	77, 347, 379
AsiGI	ACCGGT	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	95
BanII	GRGCYC	2 cut(s)	400, 457
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	113, 264
BccI	CCATC	2 cut(s)	83, 150
BcoDI	GTCTC	2 cut(s)	109, 433
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	4 cut(s)	102, 207, 210, 278
BlsI	GCNGC	4 cut(s)	103, 208, 211, 279
BmcAI	AGTACT	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	2 cut(s)	29, 96
BmsI	GCATC	2 cut(s)	295, 322
BpiI	GAAGAC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 24, 382
Bse118I	RCCGGY	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	3 cut(s)	21, 24, 382
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	457
BseXI	GCAGC	2 cut(s)	113, 264
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	2 cut(s)	5, 293
BshTI	ACCGGT	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	457
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	3 cut(s)	21, 24, 382
BsmAI	GTCTC	2 cut(s)	109, 433
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	5, 293
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	400, 457
BspACI	CCGC	5 cut(s)	18, 57, 206, 209, 335
BspANI	GGCC	2 cut(s)	5, 293
BspCNI	CTCAG	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	29, 96
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	105, 443
BstF5I	GGATG	1 cut(s)	94
BstMAI	GTCTC	2 cut(s)	109, 433
BstMWI	GCNNNNNNNGC	4 cut(s)	184, 193, 283, 461
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	113, 264
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	5, 293
BtsCI	GGATG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	258
CspAI	ACCGGT	1 cut(s)	158
CviAII	CATG	2 cut(s)	418, 474
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	2 cut(s)	105, 443
Ecl136II	GAGCTC	1 cut(s)	455
Eco24I	GRGCYC	2 cut(s)	400, 457
Eco31I	GGTCTC	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	347
EcoRV	GATATC	1 cut(s)	426
EcoT38I	GRGCYC	2 cut(s)	400, 457
FaeI	CATG	2 cut(s)	421, 477
FaiI	YATR	7 cut(s)	156, 308, 315, 330, 413, 419, 475
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	2 cut(s)	417, 473
Fnu4HI	GCNGC	4 cut(s)	102, 207, 210, 278
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	2 cut(s)	400, 457
Fsp4HI	GCNGC	4 cut(s)	102, 207, 210, 278
GluI	GCNGC	4 cut(s)	102, 207, 210, 278
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	5, 293
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	2 cut(s)	421, 477
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	2 cut(s)	88, 266
Hpy188III	TCNNGA	3 cut(s)	136, 220, 445
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	3 cut(s)	16, 59, 217
HpyCH4V	TGCA	4 cut(s)	101, 166, 286, 299
HpyF10VI	GCNNNNNNNGC	4 cut(s)	184, 193, 283, 461
HpyF3I	CTNAG	2 cut(s)	105, 443
Hsp92II	CATG	2 cut(s)	421, 477
LmnI	GCTCC	3 cut(s)	33, 266, 460
LpnPI	CCDG	6 cut(s)	6, 111, 172, 275, 389, 430
Lsp1109I	GCAGC	2 cut(s)	113, 264
LweI	GCATC	2 cut(s)	295, 322
MboII	GAAGA	2 cut(s)	37, 433
MhlI	GDGCHC	2 cut(s)	400, 457
MluCI	AATT	3 cut(s)	77, 347, 379
MlyI	GAGTC	1 cut(s)	435
MnlI	CCTC	4 cut(s)	18, 25, 49, 374
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	2 cut(s)	159, 416
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	184, 193, 283, 461
NlaIII	CATG	2 cut(s)	421, 477
NlaIV	GGNNCC	2 cut(s)	29, 96
PaeR7I	CTCGAG	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	103, 208, 211, 279
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
PpuMI	RGGWCCY	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	457
Psp5II	RGGWCCY	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	29, 96
PspPI	GGNCC	1 cut(s)	95
PspPPI	RGGWCCY	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	2 cut(s)	159, 416
SacI	GAGCTC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	4 cut(s)	102, 207, 210, 278
Sau96I	GGNCC	1 cut(s)	95
ScaI	AGTACT	1 cut(s)	259
SchI	GAGTC	1 cut(s)	435
SduI	GDGCHC	2 cut(s)	400, 457
SetI	ASST	7 cut(s)	100, 106, 126, 154, 271, 457, 466
SfaNI	GCATC	2 cut(s)	295, 322
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	2 cut(s)	159, 416
SmlI	CTYRAG	2 cut(s)	136, 365
SmoI	CTYRAG	2 cut(s)	136, 365
Sse9I	AATT	3 cut(s)	77, 347, 379
SsiI	CCGC	5 cut(s)	18, 57, 206, 209, 335
SstI	GAGCTC	1 cut(s)	457
TaqI	TCGA	2 cut(s)	126, 137
TasI	AATT	3 cut(s)	77, 347, 379
TatI	WGTACW	1 cut(s)	257
TauI	GCSGC	2 cut(s)	209, 212
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	2 cut(s)	101, 277
TspDTI	ATGAA	4 cut(s)	90, 235, 400, 434
TspGWI	ACGGA	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	3 cut(s)	77, 347, 379
XhoI	CTCGAG	1 cut(s)	136
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.