Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009048

Physical Location & Seq

Genomic Coordinates Forward (+)

14358723 .. 14360478

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g17980.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTTTCGTTTCGTTCGTTGGACGCCTTCTTTTCGCCTCTGTCTTCCTCCTATCTGCTTGGCATGAGTTCAATGAATTTGGCGTGGACGGAGGACCCGCAGCCGAATATCTGAGACCAAAATTCGATGTTTTCTCATATCATCTGTCAACTCACACTGGTGCGCAAGTGCCCAAACAAGTTGAAATCAAACATTTAGTGGCGGCGACGGTGGCATTGAAGGGTATTGGGGGTCTTCTCTTCATCTTTGGTTCTTCTATTGGAGCCTATTTGCTGCTTCTGCATCAGGCCATTGCTACTCCTATCTTGTATGACTTCTACAACTATGATCCCGAGAAGACAGAATTCAATCAACTCTTTTTTAACTTCACTCAGAACTTGGCATTATTCGGGGCTCTGCTCTTTTTCGTAGGCATGAAGACATCGATACCAAAGAGACAACAACTCAGGAAAAGAGCTCCAAAACCAAAAACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HR_lesion

Protein Analysis

160

Amino Acids

17.84

Weight (kDa)

9.52

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14420
fragaria_vesca	FvH4_4g03230 FvH4_4g03230
malus_domestica	MD13G1210800.v1.1 MD16G1214000.v1.1
prunus_persica	Prupe.1G035200_v2.0.a1 Prupe.1G035200_v2.0.a1 Prupe.8G226100_v2.0.a1 Prupe.8G226100_v2.0.a1
pyrus_communis	pycom13g18330 pycom16g17980
rosa_chinensis	RchiOBHm_Chr4g0391911
rosa_laevigata	RLG00000009850
rosa_multiflora	Rmu_sc0000383.1_g000009
rosa_roxburghii	Rroxscaffold_5G00337200
rosa_rugosa	Rorug03G0336900 Rorug03G0337000
rosa_samantha	Rh4AG039200 Rh4BG033900 Rh4CG041900 Rh4DG036800
rosa_wichuraiana	Rw4G003060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	165
AciI	CCGC	2 cut(s)	99, 203
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	3 cut(s)	77, 122, 344
AcyI	GRCGYC	1 cut(s)	25
AgsI	TTSAA	4 cut(s)	73, 185, 220, 349
AleI	CACNNNNGTG	1 cut(s)	159
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	2 cut(s)	109, 430
AlwI	GGATC	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	2 cut(s)	101, 274
ApoI	RAATTY	3 cut(s)	77, 122, 344
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	174
BanII	GRGCYC	2 cut(s)	397, 460
BbsI	GAAGAC	4 cut(s)	37, 227, 344, 425
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	2 cut(s)	113, 261
BcoDI	GTCTC	2 cut(s)	109, 430
BisI	GCNGC	3 cut(s)	102, 204, 275
BlsI	GCNGC	3 cut(s)	103, 205, 276
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	2 cut(s)	97, 265
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	4 cut(s)	37, 227, 344, 425
Bsa29I	ATCGAT	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	3 cut(s)	104, 386, 460
BseNI	ACTGG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	113, 261
BshFI	GGCC	1 cut(s)	290
BshVI	ATCGAT	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	460
BsiHKCI	CYCGRG	1 cut(s)	332
BsmAI	GTCTC	2 cut(s)	109, 430
BsnI	GGCC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	174, 397, 460
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	2 cut(s)	99, 203
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	3 cut(s)	105, 385, 459
BspDI	ATCGAT	1 cut(s)	425
BspLI	GGNNCC	2 cut(s)	97, 265
BspPI	GGATC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	25
BstDEI	CTNAG	3 cut(s)	113, 372, 446
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	2 cut(s)	109, 430
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 280
BstSLI	GKGCMC	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	113, 261
BstV2I	GAAGAC	4 cut(s)	37, 227, 344, 425
Bsu15I	ATCGAT	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	290
BsuTUI	ATCGAT	1 cut(s)	425
BtsIMutI	CAGTG	1 cut(s)	156
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	95
ClaI	ATCGAT	1 cut(s)	425
CseI	GACGC	1 cut(s)	33
CviAII	CATG	3 cut(s)	65, 415, 477
CviJI	RGCY	6 cut(s)	5, 104, 266, 290, 395, 458
CviKI_1	RGCY	6 cut(s)	5, 104, 266, 290, 395, 458
DdeI	CTNAG	3 cut(s)	113, 372, 446
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	458
Eco24I	GRGCYC	2 cut(s)	397, 460
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	344
EcoT38I	GRGCYC	2 cut(s)	397, 460
FaeI	CATG	3 cut(s)	68, 418, 480
FaiI	YATR	6 cut(s)	66, 139, 312, 327, 416, 478
FatI	CATG	3 cut(s)	64, 414, 476
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	102, 204, 275
FriOI	GRGCYC	2 cut(s)	397, 460
Fsp4HI	GCNGC	3 cut(s)	102, 204, 275
FspI	TGCGCA	1 cut(s)	165
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	3 cut(s)	102, 204, 275
HaeIII	GGCC	1 cut(s)	290
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	3 cut(s)	68, 418, 480
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
Hpy166II	GTNNAC	2 cut(s)	88, 150
Hpy188I	TCNGA	2 cut(s)	114, 375
Hpy188III	TCNNGA	2 cut(s)	332, 448
Hpy8I	GTNNAC	2 cut(s)	88, 150
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	38, 214
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 280
HpyF3I	CTNAG	3 cut(s)	113, 372, 446
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	68, 418, 480
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	263, 463
LpnPI	CCDG	3 cut(s)	144, 272, 433
Lsp1109I	GCAGC	2 cut(s)	113, 261
LweI	GCATC	1 cut(s)	292
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	6 cut(s)	37, 227, 232, 246, 349, 430
MhlI	GDGCHC	3 cut(s)	174, 397, 460
MluCI	AATT	3 cut(s)	77, 122, 344
MnlI	CCTC	3 cut(s)	49, 59, 86
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	212, 280
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	3 cut(s)	68, 418, 480
NlaIV	GGNNCC	2 cut(s)	97, 265
NsbI	TGCGCA	1 cut(s)	165
OliI	CACNNNNGTG	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	103, 205, 276
PpuMI	RGGWCCY	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	97, 265
PspPI	GGNCC	1 cut(s)	95
PspPPI	RGGWCCY	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	3 cut(s)	102, 204, 275
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	95
SduI	GDGCHC	3 cut(s)	174, 397, 460
SetI	ASST	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	3 cut(s)	77, 122, 344
SsiI	CCGC	2 cut(s)	99, 203
SstI	GAGCTC	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	2 cut(s)	126, 425
TasI	AATT	3 cut(s)	77, 122, 344
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	2 cut(s)	101, 274
TspDTI	ATGAA	3 cut(s)	90, 232, 431
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	3 cut(s)	77, 122, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.