Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009048

Physical Location & Seq

Genomic Coordinates Forward (+)

5245568 .. 5249662

Gene Structure 4095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCCTTGGTTTCCTCCGTTGGGAGACTCCTTTTCGCCTCCGTCTTCCTTCTCTCTGCTTGGCAAGAGTTCAATGAATTTGGTTCGGATGGGGGACCTGCAGCTAAGTATTTGAGACCAAAGCTGGATGTTTTCTCGAGCCATCTGTTAGCTCATACCGGTGTGCAAGTGCCCAAGCAAGTTGAGGTGAGAAAGTTGATTGATTTAGTTGTTATGATGGATTTAGGGTTTTGTGATTGGTTTAATTTGGACACAAGGAGAGTGATCTTTGGGACTTGTTGTTGGCAGATTAAGCATTTAGTGGCGGCGGCGATTGTCTTGAAGGGTGTCGGGGGTGTTCTTTTCATCTTTGGAAGTACTCTTGGAGCTGTTCTGCTGCTTCTGCATCAGGCCATTGCAACTCCTATATTGTATGACTTCTACAACTATGATGCGGAGAAAAAGAATTCAATCAACTTTTCCTCAAGTTTACCCAGAAAAGAAGCCCAGTTTAGTATTCCAGTCATAGACCTCAAGGGCCTCTCAGATTCAACTAAACGAAAGGAGATCGTTGCAGATGTTGCAGAAGCATCAGAGTCTTGGGGCTTTTTTCAAATTGTCAATTATGGAATACATGTTGATGTGCTTGAGGAGATTAAGGATGGGGTACGTGGGTTCTTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HR_lesion

Protein Analysis

221

Amino Acids

24.54

Weight (kDa)

5.96

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HR_lesion	PF05514	1 - 72	1.5e-21	HR-like lesion-inducing
HR_lesion	PF05514	95 - 149	3.8e-20	HR-like lesion-inducing
DIOX_N	PF14226	166 - 221	3.5e-13	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14420
fragaria_vesca	FvH4_4g03230 FvH4_4g03230
malus_domestica	MD13G1210800.v1.1 MD16G1214000.v1.1
prunus_persica	Prupe.1G035200_v2.0.a1 Prupe.1G035200_v2.0.a1 Prupe.8G226100_v2.0.a1 Prupe.8G226100_v2.0.a1
pyrus_communis	pycom13g18330 pycom16g17980
rosa_chinensis	RchiOBHm_Chr4g0391911
rosa_laevigata	RLG00000009850
rosa_multiflora	Rmu_sc0000383.1_g000009
rosa_roxburghii	Rroxscaffold_5G00337200
rosa_rugosa	Rorug03G0336900 Rorug03G0337000
rosa_samantha	Rh4AG039200 Rh4BG033900 Rh4CG041900 Rh4DG036800
rosa_wichuraiana	Rw4G003060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	3 cut(s)	305, 308, 434
AcsI	RAATTY	2 cut(s)	77, 445
AfaI	GTAC	2 cut(s)	358, 648
AfiI	CCNNNNNNNGG	1 cut(s)	21
AflIII	ACRYGT	1 cut(s)	613
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	5 cut(s)	73, 322, 450, 531, 593
AluBI	AGCT	4 cut(s)	104, 124, 152, 368
AluI	AGCT	4 cut(s)	104, 124, 152, 368
Alw26I	GTCTC	2 cut(s)	19, 109
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	3 cut(s)	3, 390, 517
ApeKI	GCWGC	2 cut(s)	101, 376
ApoI	RAATTY	2 cut(s)	77, 445
AsiGI	ACCGGT	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	95, 517
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	174
BaeI	ACNNNNGTAYC	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	113, 363
BccI	CCATC	4 cut(s)	83, 150, 211, 635
BcoDI	GTCTC	2 cut(s)	19, 109
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	4 cut(s)	102, 306, 309, 377
BlsI	GCNGC	4 cut(s)	103, 307, 310, 378
BmcAI	AGTACT	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	95, 517
BmiI	GGNNCC	1 cut(s)	96
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	3 cut(s)	394, 421, 578
BmuI	ACTGGG	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	37
BpuEI	CTTGAG	3 cut(s)	448, 497, 647
BsaAI	YACGTR	1 cut(s)	650
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	2 cut(s)	487, 500
Bse3DI	GCAATG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	3 cut(s)	94, 133, 646
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	2 cut(s)	487, 500
BseRI	GAGGAG	1 cut(s)	644
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	113, 363
BshFI	GGCC	3 cut(s)	5, 392, 519
BshTI	ACCGGT	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	2 cut(s)	108, 286
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	2 cut(s)	19, 109
BsmFI	GGGAC	2 cut(s)	108, 286
BsnI	GGCC	3 cut(s)	5, 392, 519
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	264, 546
BspACI	CCGC	3 cut(s)	305, 308, 434
BspANI	GGCC	3 cut(s)	5, 392, 519
BspCNI	CTCAG	1 cut(s)	536
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	487, 500
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	264, 546
BssT1I	CCWWGG	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstBAI	YACGTR	1 cut(s)	650
BstDEI	CTNAG	2 cut(s)	105, 523
BstF5I	GGATG	3 cut(s)	94, 133, 646
BstKTI	GATC	2 cut(s)	267, 549
BstMAI	GTCTC	2 cut(s)	19, 109
BstMBI	GATC	2 cut(s)	264, 546
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 382, 560
BstNSI	RCATGY	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	113, 363
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	5, 392, 519
BtsCI	GGATG	3 cut(s)	94, 133, 646
BveI	ACCTGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	95, 517
Csp6I	GTAC	2 cut(s)	357, 647
CspAI	ACCGGT	1 cut(s)	158
CviAII	CATG	1 cut(s)	614
CviQI	GTAC	2 cut(s)	357, 647
DdeI	CTNAG	2 cut(s)	105, 523
DpnI	GATC	2 cut(s)	266, 548
DpnII	GATC	2 cut(s)	264, 546
Eco130I	CCWWGG	1 cut(s)	6
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	136
EcoO109I	RGGNCCY	2 cut(s)	95, 517
EcoRI	GAATTC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	617
FaiI	YATR	8 cut(s)	156, 215, 407, 414, 429, 506, 606, 615
FaqI	GGGAC	2 cut(s)	108, 286
FatI	CATG	1 cut(s)	613
Fnu4HI	GCNGC	4 cut(s)	102, 306, 309, 377
FokI	GGATG	3 cut(s)	101, 140, 653
Fsp4HI	GCNGC	4 cut(s)	102, 306, 309, 377
GluI	GCNGC	4 cut(s)	102, 306, 309, 377
HaeIII	GGCC	3 cut(s)	5, 392, 519
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	1 cut(s)	617
HinfI	GANTC	3 cut(s)	27, 527, 575
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	470
Hpy188I	TCNGA	3 cut(s)	88, 526, 574
Hpy188III	TCNNGA	2 cut(s)	136, 319
Hpy8I	GTNNAC	1 cut(s)	470
HpyAV	CCTTC	2 cut(s)	59, 316
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	6 cut(s)	101, 166, 385, 398, 554, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 382, 560
HpyF3I	CTNAG	2 cut(s)	105, 523
HpySE526I	ACGT	1 cut(s)	649
Hsp92II	CATG	1 cut(s)	617
Kzo9I	GATC	2 cut(s)	264, 546
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	7 cut(s)	110, 111, 172, 374, 487, 500, 513
Lsp1109I	GCAGC	2 cut(s)	113, 363
LweI	GCATC	3 cut(s)	394, 421, 578
MaeII	ACGT	1 cut(s)	649
MalI	GATC	2 cut(s)	266, 548
MboI	GATC	2 cut(s)	264, 546
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	5 cut(s)	77, 244, 445, 594, 601
MlyI	GAGTC	2 cut(s)	21, 584
MnlI	CCTC	7 cut(s)	25, 49, 178, 472, 521, 530, 622
MseI	TTAA	3 cut(s)	243, 291, 636
MslI	CAYNNNNRTG	2 cut(s)	159, 618
MspI	CCGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	292, 382, 560
NdeII	GATC	2 cut(s)	264, 546
NlaIII	CATG	1 cut(s)	617
NlaIV	GGNNCC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	617
PaeR7I	CTCGAG	1 cut(s)	136
PciI	ACATGT	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	527
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	103, 307, 310, 378
PleI	GAGTC	2 cut(s)	21, 583
PpsI	GAGTC	2 cut(s)	21, 583
Ppu21I	YACGTR	1 cut(s)	650
PpuMI	RGGWCCY	1 cut(s)	95
PscI	ACATGT	1 cut(s)	613
Psp5II	RGGWCCY	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	95, 517
PspPPI	RGGWCCY	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	358, 648
RsaNI	GTAC	2 cut(s)	357, 647
RseI	CAYNNNNRTG	2 cut(s)	159, 618
SaqAI	TTAA	3 cut(s)	243, 291, 636
SatI	GCNGC	4 cut(s)	102, 306, 309, 377
Sau3AI	GATC	2 cut(s)	264, 546
Sau96I	GGNCC	2 cut(s)	95, 517
ScaI	AGTACT	1 cut(s)	358
SchI	GAGTC	2 cut(s)	21, 584
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	8 cut(s)	100, 106, 126, 154, 189, 370, 513, 652
SfaNI	GCATC	3 cut(s)	394, 421, 578
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	2 cut(s)	159, 618
SmlI	CTYRAG	4 cut(s)	136, 463, 512, 626
SmoI	CTYRAG	4 cut(s)	136, 463, 512, 626
Sse9I	AATT	5 cut(s)	77, 244, 445, 594, 601
SsiI	CCGC	3 cut(s)	305, 308, 434
StyI	CCWWGG	1 cut(s)	6
TaiI	ACGT	1 cut(s)	652
TaqI	TCGA	1 cut(s)	137
TasI	AATT	5 cut(s)	77, 244, 445, 594, 601
TatI	WGTACW	1 cut(s)	356
TauI	GCSGC	2 cut(s)	308, 311
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	3 cut(s)	243, 291, 636
Tru9I	TTAA	3 cut(s)	243, 291, 636
TseI	GCWGC	2 cut(s)	101, 376
TspDTI	ATGAA	2 cut(s)	90, 334
TspGWI	ACGGA	2 cut(s)	7, 31
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	2 cut(s)	77, 445
XceI	RCATGY	1 cut(s)	617
XhoI	CTCGAG	1 cut(s)	136
ZrmI	AGTACT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.