Rh4DG036800

HR-like lesion-inducing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009048
Physical Location & Seq
Forward (+)
6053123 .. 6054709
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG036800.1

Sequence Viewer

Length: 474 bp
ATGGCCTTCGTTTCCTCCGTTGGGAGACTCCTTTTCGCCCTCGTCTTCCTTCTCTCCGCTTGGCAAGAGTTCAATGAATTTGGTTCGGATGGGGGACCTGCAGCTGAGTATTTGAGACCAAAGCTCGATGTTTTATCGAGCCATCTGTTAGCTCATACGGGTGTGCAAGTGCCCAAGCAAGTTGAGATTAAGCATTTAGTGGCGGCGGCGATAGTCTTGAAGGGTGTTGGGGGTGTTCTTTTCATCTTTGGAAGTACTCTTGGAGCTGTTCTGCTGCTTCTGCATCAGGCCATTGCAACTCCTATATTGTATGACTTCTACAACTATGATGCGGAGAAAAAAGAATTCAATCAACTTTTCCTCAAGTTTACCCAGAATTTGGCATTGTTTGGGGCTCTGCTCTTTTTCATAAGCATGAAGATATCAATGCCAAAGAGACTCAGGAAAAGAGCTCCCAAAGCTAAAACTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HR_lesion

Protein Analysis

157

Amino Acids

17.37

Weight (kDa)

9.77

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HR_lesion PF05514 1 - 139 3.9e-59 HR-like lesion-inducing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AccB7I CCANNNNNTGG 1 cut(s) 379
AciI CCGC 4 cut(s) 57, 203, 206, 332
AcsI RAATTY 3 cut(s) 77, 344, 376
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 2 cut(s) 21, 379
AgsI TTSAA 3 cut(s) 73, 220, 349
AluBI AGCT 6 cut(s) 104, 124, 152, 266, 452, 461
AluI AGCT 6 cut(s) 104, 124, 152, 266, 452, 461
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 3 cut(s) 19, 109, 430
AoxI GGCC 2 cut(s) 3, 288
ApeKI GCWGC 2 cut(s) 101, 274
ApoI RAATTY 3 cut(s) 77, 344, 376
AspS9I GGNCC 1 cut(s) 95
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 174
BanII GRGCYC 2 cut(s) 397, 454
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 2 cut(s) 113, 261
BccI CCATC 2 cut(s) 83, 150
BcoDI GTCTC 3 cut(s) 19, 109, 430
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 4 cut(s) 102, 204, 207, 275
BlsI GCNGC 4 cut(s) 103, 205, 208, 276
BmcAI AGTACT 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 2 cut(s) 292, 319
BpiI GAAGAC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 379
Bse3DI GCAATG 1 cut(s) 291
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 2 cut(s) 21, 379
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 96, 454
BseSI GKGCMC 1 cut(s) 174
BseXI GCAGC 2 cut(s) 113, 261
BshFI GGCC 2 cut(s) 5, 290
BsiHKAI GWGCWC 1 cut(s) 454
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 21, 379
BsmAI GTCTC 3 cut(s) 19, 109, 430
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 2 cut(s) 5, 290
Bso31I GGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 3 cut(s) 174, 397, 454
BspACI CCGC 4 cut(s) 57, 203, 206, 332
BspANI GGCC 2 cut(s) 5, 290
BspCNI CTCAG 2 cut(s) 97, 453
BspLI GGNNCC 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 105, 440
BstF5I GGATG 1 cut(s) 94
BstMAI GTCTC 3 cut(s) 19, 109, 430
BstMWI GCNNNNNNNGC 2 cut(s) 280, 458
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 113, 261
BstV2I GAAGAC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 5, 290
BtsCI GGATG 1 cut(s) 94
BveI ACCTGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 415, 471
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 2 cut(s) 105, 440
Ecl136II GAGCTC 1 cut(s) 452
Eco24I GRGCYC 2 cut(s) 397, 454
Eco31I GGTCTC 1 cut(s) 109
Eco32I GATATC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 344
EcoRV GATATC 1 cut(s) 423
EcoT38I GRGCYC 2 cut(s) 397, 454
FaeI CATG 2 cut(s) 418, 474
FaiI YATR 7 cut(s) 156, 305, 312, 327, 410, 416, 472
FaqI GGGAC 1 cut(s) 108
FatI CATG 2 cut(s) 414, 470
Fnu4HI GCNGC 4 cut(s) 102, 204, 207, 275
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 2 cut(s) 397, 454
Fsp4HI GCNGC 4 cut(s) 102, 204, 207, 275
GluI GCNGC 4 cut(s) 102, 204, 207, 275
HaeIII GGCC 2 cut(s) 5, 290
Hin1II CATG 2 cut(s) 418, 474
HinfI GANTC 2 cut(s) 27, 438
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 217, 442
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 3 cut(s) 16, 59, 214
HpyCH4V TGCA 4 cut(s) 101, 166, 283, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 458
HpyF3I CTNAG 2 cut(s) 105, 440
Hsp92II CATG 2 cut(s) 418, 474
LmnI GCTCC 2 cut(s) 263, 457
LpnPI CCDG 4 cut(s) 111, 272, 386, 427
Lsp1109I GCAGC 2 cut(s) 113, 261
LweI GCATC 2 cut(s) 292, 319
MboII GAAGA 2 cut(s) 37, 430
MhlI GDGCHC 3 cut(s) 174, 397, 454
MluCI AATT 3 cut(s) 77, 344, 376
MlyI GAGTC 2 cut(s) 21, 432
MnlI CCTC 3 cut(s) 25, 50, 371
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 2 cut(s) 159, 413
MspA1I CMGCKG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 280, 458
NlaIII CATG 2 cut(s) 418, 474
NlaIV GGNNCC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PflMI CCANNNNNTGG 1 cut(s) 379
PkrI GCNGC 4 cut(s) 103, 205, 208, 276
PleI GAGTC 2 cut(s) 21, 432
PpsI GAGTC 2 cut(s) 21, 432
PpuMI RGGWCCY 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 454
Psp5II RGGWCCY 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PstI CTGCAG 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 2 cut(s) 159, 413
SacI GAGCTC 1 cut(s) 454
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 4 cut(s) 102, 204, 207, 275
Sau96I GGNCC 1 cut(s) 95
ScaI AGTACT 1 cut(s) 256
SchI GAGTC 2 cut(s) 21, 432
SduI GDGCHC 3 cut(s) 174, 397, 454
SetI ASST 7 cut(s) 100, 106, 126, 154, 268, 454, 463
SfaNI GCATC 2 cut(s) 292, 319
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 2 cut(s) 159, 413
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 3 cut(s) 77, 344, 376
SsiI CCGC 4 cut(s) 57, 203, 206, 332
SstI GAGCTC 1 cut(s) 454
TaqI TCGA 2 cut(s) 126, 137
TasI AATT 3 cut(s) 77, 344, 376
TatI WGTACW 1 cut(s) 254
TauI GCSGC 2 cut(s) 206, 209
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseI GCWGC 2 cut(s) 101, 274
TspDTI ATGAA 4 cut(s) 90, 232, 397, 431
TspGWI ACGGA 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 3 cut(s) 77, 344, 376
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.