Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009048

Physical Location & Seq

Genomic Coordinates Forward (+)

14396271 .. 14398035

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTTTCGTTTCGTTCGTTGGACGCCTTCTTTTCGCCTCTGTCTTCTTCCTCTCTGCTTGGCATGAGTTCAATGAATTTGGCGTGGACGGGGGACCCGCAGCCGAATATCTGAGACCAAAATTCGACGTTTTCTCGAATCATCTGTCAACTCACACTGGTGTGCAAGTGCCCAAACAAGTTGAAATCAAACATTTAGTGGCAGCCATGGTGGCATTGAAGGGCATTGGGGGTCTTCTCTTCATCTTTGGTTCTTCTATTGGCGCCTATTTGCTGCTTCTGCATCAGGCCATTGCTACTCCTATCTTGTATGATTTCTACAACTATGATCCCGAGAAGACAGAATTCAATCAACTCTTTTTTCAGTTTACTCAGAACATGGCATTCTTCGGGGCTCTGCTCTTTTTCGTAGGCATGAAGACATTGATACCAAAGAGACAACAACTCAGGAAAAGAGCTCCAAAACCAAAAACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HR_lesion

Protein Analysis

160

Amino Acids

17.97

Weight (kDa)

9.56

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14420
fragaria_vesca	FvH4_4g03230 FvH4_4g03230
malus_domestica	MD13G1210800.v1.1 MD16G1214000.v1.1
prunus_persica	Prupe.1G035200_v2.0.a1 Prupe.1G035200_v2.0.a1 Prupe.8G226100_v2.0.a1 Prupe.8G226100_v2.0.a1
pyrus_communis	pycom13g18330 pycom16g17980
rosa_chinensis	RchiOBHm_Chr4g0391911
rosa_laevigata	RLG00000009850
rosa_multiflora	Rmu_sc0000383.1_g000009
rosa_roxburghii	Rroxscaffold_5G00337200
rosa_rugosa	Rorug03G0336900 Rorug03G0337000
rosa_samantha	Rh4AG039200 Rh4BG033900 Rh4CG041900 Rh4DG036800
rosa_wichuraiana	Rw4G003060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	3 cut(s)	77, 122, 344
AcyI	GRCGYC	2 cut(s)	25, 264
AgsI	TTSAA	4 cut(s)	73, 185, 220, 349
AleI	CACNNNNGTG	2 cut(s)	159, 161
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	2 cut(s)	109, 430
AlwI	GGATC	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	3 cut(s)	101, 203, 274
ApoI	RAATTY	3 cut(s)	77, 122, 344
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	2 cut(s)	397, 460
BbsI	GAAGAC	4 cut(s)	37, 227, 344, 425
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	3 cut(s)	113, 215, 261
BcoDI	GTCTC	2 cut(s)	109, 430
BfoI	RGCGCY	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	3 cut(s)	102, 204, 275
BlsI	GCNGC	3 cut(s)	103, 205, 276
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	3 cut(s)	96, 97, 265
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	4 cut(s)	37, 227, 344, 425
BsaHI	GRCGYC	2 cut(s)	25, 264
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	3 cut(s)	104, 386, 460
BseNI	ACTGG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	3 cut(s)	113, 215, 261
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	460
BsiHKCI	CYCGRG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	109, 430
BsmFI	GGGAC	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	174, 397, 460
Bsp143I	GATC	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	3 cut(s)	105, 385, 459
BspLI	GGNNCC	3 cut(s)	96, 97, 265
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	2 cut(s)	25, 264
BssT1I	CCWWGG	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	2 cut(s)	25, 264
BstDEI	CTNAG	3 cut(s)	113, 372, 446
BstDSI	CCRYGG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	2 cut(s)	109, 430
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 280
BstSLI	GKGCMC	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	113, 215, 261
BstV2I	GAAGAC	4 cut(s)	37, 227, 344, 425
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	156
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	95
CseI	GACGC	1 cut(s)	33
CviAII	CATG	5 cut(s)	65, 208, 379, 415, 477
CviJI	RGCY	6 cut(s)	5, 104, 206, 290, 395, 458
CviKI_1	RGCY	6 cut(s)	5, 104, 206, 290, 395, 458
DdeI	CTNAG	3 cut(s)	113, 372, 446
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	2 cut(s)	397, 460
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	2 cut(s)	397, 460
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	5 cut(s)	68, 211, 382, 418, 480
FaiI	YATR	7 cut(s)	66, 209, 312, 327, 380, 416, 478
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	5 cut(s)	64, 207, 378, 414, 476
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	102, 204, 275
FriOI	GRGCYC	2 cut(s)	397, 460
Fsp4HI	GCNGC	3 cut(s)	102, 204, 275
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	3 cut(s)	102, 204, 275
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	290
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	2 cut(s)	25, 264
Hin1II	CATG	5 cut(s)	68, 211, 382, 418, 480
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	1 cut(s)	139
Hpy166II	GTNNAC	3 cut(s)	88, 150, 369
Hpy188I	TCNGA	2 cut(s)	114, 375
Hpy188III	TCNNGA	3 cut(s)	136, 332, 448
Hpy8I	GTNNAC	3 cut(s)	88, 150, 369
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	38, 214
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	166, 283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 280
HpyF3I	CTNAG	3 cut(s)	113, 372, 446
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	2 cut(s)	25, 264
Hsp92II	CATG	5 cut(s)	68, 211, 382, 418, 480
HspAI	GCGC	1 cut(s)	264
KasI	GGCGCC	1 cut(s)	263
KflI	GGGWCCC	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	3 cut(s)	144, 272, 433
Lsp1109I	GCAGC	3 cut(s)	113, 215, 261
LweI	GCATC	1 cut(s)	292
MaeII	ACGT	1 cut(s)	129
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	8 cut(s)	37, 40, 227, 232, 246, 349, 379, 430
MhlI	GDGCHC	3 cut(s)	174, 397, 460
MluCI	AATT	3 cut(s)	77, 122, 344
Mly113I	GGCGCC	1 cut(s)	264
MnlI	CCTC	2 cut(s)	49, 62
MslI	CAYNNNNRTG	2 cut(s)	159, 161
Mva1269I	GAATGC	1 cut(s)	383
MwoI	GCNNNNNNNGC	2 cut(s)	212, 280
NarI	GGCGCC	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	5 cut(s)	68, 211, 382, 418, 480
NlaIV	GGNNCC	3 cut(s)	96, 97, 265
OliI	CACNNNNGTG	2 cut(s)	159, 161
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PctI	GAATGC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	103, 205, 276
PluTI	GGCGCC	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	96, 97, 265
PspPI	GGNCC	1 cut(s)	95
PspPPI	RGGWCCY	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	159, 161
SacI	GAGCTC	1 cut(s)	460
SatI	GCNGC	3 cut(s)	102, 204, 275
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	95
SduI	GDGCHC	3 cut(s)	174, 397, 460
SetI	ASST	2 cut(s)	132, 460
SfaNI	GCATC	1 cut(s)	292
SfoI	GGCGCC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	2 cut(s)	159, 161
Sse9I	AATT	3 cut(s)	77, 122, 344
SsiI	CCGC	1 cut(s)	99
SspDI	GGCGCC	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	207
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	126, 137
TasI	AATT	3 cut(s)	77, 122, 344
TfiI	GAWTC	1 cut(s)	139
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	3 cut(s)	101, 203, 274
TspDTI	ATGAA	3 cut(s)	90, 232, 431
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	3 cut(s)	77, 122, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.