Prupe.1G222700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013315
Physical Location & Seq
Forward (+)
23673159 .. 23674178
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G222700.1

Sequence Viewer

Length: 822 bp
ATGAAGATAAAGAACAAAGGCAAAGTGCACCCATCTCCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCTCATGGGTTTGTTCTCTCTGTGCTTCAGCTTCTCCCAGCTGCCATTTTAGCTCTGGCCTCGGTCCTCTCCCTCGAGGACCGCGAGGTCTTGGCTTACTTGATAACCCGGTCCATGAAAACCACCCCCAATATTTCGTCGATCCCGGCCCAAGACCGCAAGAAGAAATCTTCCAAGAAAGGCCCCAAGTCCACCAGCGCCAGCACCCACCAGCCCCCAATGTTCGATTGCGACTGCTTCGACTGCTACAGAAGCTACTGGTTCAAATGGGACTCTTCCCCCAACCGGGAGCTCATCCACCAAGCCATCGAAGCCTTCGAAGATCACCTGACCAACGGCGAGAAGACCAAGAAGAACAGCGGCAGAGGCAAGAGAAGAGACAAGCTGAGCCGCCGCGAGGCCCCCGAACCGGTCGATGTTGCTGCCCAAGATTCTGTCTTTCTGGAAGAGAACGACCAAGTTTCACATGAGCTTGCCGTTGAAAGCTCTGCTTCTGCTCTGTTGCCGGAAAACGACGTGGTTTTGGTGGGTTCCAATGAGAAAGCGGATGGGGTCGAAGAAAATGACGCGAAAGTGGAAGACTTGGGCGCAGAGGTTAACTTAGAGCCTCCGGAGACGGCGGATGACGTGGCGATTATTGCACGGACGGCGTCGGCGAGCAACCACAGGGGATTGGCCAGGAAAGTGCTGCCGGACGTGTTGGGCCTGTTTAATTCTCGTTTGTGGAACCTTTGGAGTCCGAATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

29.85

Weight (kDa)

6.01

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13090
fragaria_vesca FvH4_4g23440
malus_domestica MD05G1113800.v1.1 MD13G1122500.v1.1 MD16G1123000.v1.1
prunus_persica Prupe.1G222700_v2.0.a1 Prupe.6G184300_v2.0.a1
pyrus_communis pycom13g10660
rosa_chinensis RchiOBHm_Chr4g0429791
rosa_laevigata RLG00000007042
rosa_multiflora Rmu_co8022056.1_g000001 Rmu_sc0018457.1_g000001
rosa_roxburghii Rroxscaffold_5G00371570
rosa_rugosa Rorug04G0238400
rosa_samantha Rh4BG300700 Rh4CG316200 Rh4DG297800
rosa_wichuraiana Rw4G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AbsI CCTCGAGG 1 cut(s) 146
AccII CGCG 3 cut(s) 156, 468, 641
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 7 cut(s) 154, 229, 432, 463, 466, 617, 692
AclWI GGATC 1 cut(s) 208
AcoI YGGCCR 1 cut(s) 747
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 722
AfiI CCNNNNNNNGG 5 cut(s) 78, 357, 358, 469, 481
AflIII ACRYGT 1 cut(s) 768
AgeI ACCGGT 1 cut(s) 481
AgsI TTSAA 2 cut(s) 337, 554
AjiI CACGTC 3 cut(s) 589, 700, 769
AjnI CCWGG 1 cut(s) 749
AluBI AGCT 8 cut(s) 103, 113, 125, 327, 364, 457, 544, 558
AluI AGCT 8 cut(s) 103, 113, 125, 327, 364, 457, 544, 558
Alw21I GWGCWC 2 cut(s) 30, 366
Alw26I GTCTC 2 cut(s) 444, 680
Alw44I GTGCAC 1 cut(s) 26
AlwI GGATC 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 6 cut(s) 129, 219, 253, 471, 747, 775
ApaLI GTGCAC 1 cut(s) 26
ApeKI GCWGC 3 cut(s) 113, 494, 760
AsiGI ACCGGT 1 cut(s) 481
AspLEI GCGC 2 cut(s) 272, 662
AspS9I GGNCC 7 cut(s) 136, 151, 183, 220, 254, 472, 775
AsuC2I CCSGG 3 cut(s) 181, 218, 359
AsuHPI GGTGA 1 cut(s) 389
AsuII TTCGAA 1 cut(s) 390
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 3 cut(s) 136, 151, 183
BaeGI GKGCMC 1 cut(s) 30
BalI TGGCCA 1 cut(s) 749
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 2 cut(s) 422, 657
Bbv12I GWGCWC 2 cut(s) 30, 366
BbvI GCAGC 3 cut(s) 100, 481, 747
BccI CCATC 3 cut(s) 40, 386, 614
BceAI ACGGC 4 cut(s) 424, 533, 705, 735
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciT130I CCWGG 1 cut(s) 751
BcnI CCSGG 3 cut(s) 181, 218, 359
BcoDI GTCTC 2 cut(s) 444, 680
BfaI CTAG 1 cut(s) 820
BfmI CTRYAG 1 cut(s) 319
BfoI RGCGCY 1 cut(s) 273
BisI GCNGC 6 cut(s) 114, 433, 463, 466, 495, 761
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 6 cut(s) 115, 434, 464, 467, 496, 762
Bme1390I CCNGG 4 cut(s) 181, 218, 359, 751
Bme18I GGWCC 3 cut(s) 136, 151, 183
BmeT110I CYCGRG 1 cut(s) 146
BmgBI CACGTC 3 cut(s) 589, 700, 769
BmgT120I GGNCC 7 cut(s) 136, 151, 183, 220, 254, 472, 775
BmiI GGNNCC 4 cut(s) 256, 474, 604, 800
BmrFI CCNGG 4 cut(s) 181, 218, 359, 751
BpiI GAAGAC 2 cut(s) 422, 657
Bpu1102I GCTNAGC 1 cut(s) 458
Bpu14I TTCGAA 1 cut(s) 390
BpuMI CCSGG 3 cut(s) 181, 218, 359
BsaHI GRCGYC 1 cut(s) 722
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 2 cut(s) 481, 682
Bsc4I CCNNNNNNNGG 5 cut(s) 78, 357, 358, 469, 481
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 1 cut(s) 335
BseAI TCCGGA 1 cut(s) 682
BseBI CCWGG 1 cut(s) 751
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 3 cut(s) 366, 625, 700
BseLI CCNNNNNNNGG 5 cut(s) 78, 357, 358, 469, 481
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 7 cut(s) 43, 46, 49, 52, 55, 58, 61
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 3 cut(s) 100, 481, 747
BseYI CCCAGC 1 cut(s) 109
Bsh1236I CGCG 3 cut(s) 156, 468, 641
Bsh1285I CGRYCG 1 cut(s) 486
BshFI GGCC 6 cut(s) 131, 221, 255, 473, 749, 777
BshTI ACCGGT 1 cut(s) 481
BsiEI CGRYCG 1 cut(s) 486
BsiHKAI GWGCWC 2 cut(s) 30, 366
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 7 cut(s) 181, 218, 358, 482, 578, 683, 764
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 5 cut(s) 78, 357, 358, 469, 481
BsmAI GTCTC 2 cut(s) 444, 680
BsmBI CGTCTC 1 cut(s) 680
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 6 cut(s) 131, 221, 255, 473, 749, 777
BsoBI CYCGRG 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 390
Bsp1286I GDGCHC 2 cut(s) 30, 366
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 2 cut(s) 213, 394
Bsp1720I GCTNAGC 1 cut(s) 458
BspACI CCGC 7 cut(s) 154, 229, 432, 463, 466, 617, 692
BspANI GGCC 6 cut(s) 131, 221, 255, 473, 749, 777
BspCNI CTCAG 1 cut(s) 450
BspEI TCCGGA 1 cut(s) 682
BspFNI CGCG 3 cut(s) 156, 468, 641
BspLI GGNNCC 4 cut(s) 256, 474, 604, 800
BspPI GGATC 1 cut(s) 208
BspT104I TTCGAA 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 481
BsrI ACTGG 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 213, 394
BssNI GRCGYC 1 cut(s) 722
Bst2UI CCWGG 1 cut(s) 751
Bst6I CTCTTC 3 cut(s) 352, 442, 513
BstACI GRCGYC 1 cut(s) 722
BstBI TTCGAA 1 cut(s) 390
BstC8I GCNNGC 3 cut(s) 274, 546, 730
BstDEI CTNAG 2 cut(s) 458, 673
BstF5I GGATG 3 cut(s) 366, 625, 700
BstFNI CGCG 3 cut(s) 156, 468, 641
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 2 cut(s) 272, 662
BstKTI GATC 2 cut(s) 216, 397
BstMAI GTCTC 2 cut(s) 444, 680
BstMBI GATC 2 cut(s) 213, 394
BstMCI CGRYCG 1 cut(s) 486
BstMWI GCNNNNNNNGC 7 cut(s) 122, 315, 324, 383, 438, 710, 719
BstNI CCWGG 1 cut(s) 751
BstSCI CCNGG 4 cut(s) 179, 216, 357, 749
BstSFI CTRYAG 1 cut(s) 319
BstSLI GKGCMC 1 cut(s) 30
BstUI CGCG 3 cut(s) 156, 468, 641
BstV1I GCAGC 3 cut(s) 100, 481, 747
BstV2I GAAGAC 2 cut(s) 422, 657
BsuRI GGCC 6 cut(s) 131, 221, 255, 473, 749, 777
BtrI CACGTC 3 cut(s) 589, 700, 769
BtsCI GGATG 3 cut(s) 366, 625, 700
Cac8I GCNNGC 3 cut(s) 274, 546, 730
CfoI GCGC 2 cut(s) 272, 662
Cfr10I RCCGGY 1 cut(s) 481
Cfr13I GGNCC 7 cut(s) 136, 151, 183, 220, 254, 472, 775
CseI GACGC 2 cut(s) 647, 711
CspAI ACCGGT 1 cut(s) 481
CviAII CATG 3 cut(s) 77, 187, 539
DdeI CTNAG 2 cut(s) 458, 673
DpnI GATC 2 cut(s) 215, 396
DpnII GATC 2 cut(s) 213, 394
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 747
Eam1104I CTCTTC 3 cut(s) 352, 442, 513
EarI CTCTTC 3 cut(s) 352, 442, 513
EciI GGCGGA 1 cut(s) 707
Ecl136II GAGCTC 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 3 cut(s) 136, 151, 183
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 364
EcoO109I RGGNCCY 2 cut(s) 254, 472
EcoRII CCWGG 1 cut(s) 749
EcoT38I GRGCYC 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 680
FaeI CATG 3 cut(s) 80, 190, 542
FaiI YATR 3 cut(s) 78, 188, 540
FalI AAGNNNNNCTT 2 cut(s) 547, 579
FaqI GGGAC 1 cut(s) 356
FatI CATG 3 cut(s) 76, 186, 538
Fnu4HI GCNGC 6 cut(s) 114, 433, 463, 466, 495, 761
FokI GGATG 3 cut(s) 353, 632, 707
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 6 cut(s) 114, 433, 463, 466, 495, 761
FspBI CTAG 1 cut(s) 820
GlaI GCGC 2 cut(s) 271, 661
GluI GCNGC 6 cut(s) 114, 433, 463, 466, 495, 761
GsaI CCCAGC 1 cut(s) 113
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 6 cut(s) 131, 221, 255, 473, 749, 777
HapII CCGG 7 cut(s) 181, 218, 358, 482, 578, 683, 764
HgaI GACGC 2 cut(s) 647, 711
HhaI GCGC 2 cut(s) 272, 662
Hin1I GRCGYC 1 cut(s) 722
Hin1II CATG 3 cut(s) 80, 190, 542
Hin6I GCGC 2 cut(s) 270, 660
HinP1I GCGC 2 cut(s) 270, 660
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 3 cut(s) 344, 503, 808
HpaI GTTAAC 1 cut(s) 670
HpaII CCGG 7 cut(s) 181, 218, 358, 482, 578, 683, 764
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 3 cut(s) 28, 264, 670
Hpy188I TCNGA 1 cut(s) 813
Hpy188III TCNNGA 2 cut(s) 515, 683
Hpy8I GTNNAC 3 cut(s) 28, 264, 670
Hpy99I CGWCG 3 cut(s) 214, 590, 727
HpyAV CCTTC 2 cut(s) 48, 397
HpyCH4IV ACGT 3 cut(s) 588, 699, 768
HpyCH4V TGCA 2 cut(s) 28, 713
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 315, 324, 383, 438, 710, 719
HpyF3I CTNAG 2 cut(s) 458, 673
HpySE526I ACGT 3 cut(s) 588, 699, 768
Hsp92I GRCGYC 1 cut(s) 722
Hsp92II CATG 3 cut(s) 80, 190, 542
HspAI GCGC 2 cut(s) 270, 660
Kpn2I TCCGGA 1 cut(s) 682
KspAI GTTAAC 1 cut(s) 670
Kzo9I GATC 2 cut(s) 213, 394
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 3 cut(s) 100, 481, 747
MaeI CTAG 1 cut(s) 820
MaeII ACGT 3 cut(s) 588, 699, 768
MalI GATC 2 cut(s) 215, 396
MboI GATC 2 cut(s) 213, 394
MhlI GDGCHC 2 cut(s) 30, 366
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 1 cut(s) 784
MluNI TGGCCA 1 cut(s) 749
MlyI GAGTC 2 cut(s) 338, 817
Mox20I TGGCCA 1 cut(s) 749
MroI TCCGGA 1 cut(s) 682
MscI TGGCCA 1 cut(s) 749
MseI TTAA 2 cut(s) 669, 783
Msp20I TGGCCA 1 cut(s) 749
MspA1I CMGCKG 2 cut(s) 113, 432
MspI CCGG 7 cut(s) 181, 218, 358, 482, 578, 683, 764
MspR9I CCNGG 4 cut(s) 181, 218, 359, 751
MvaI CCWGG 1 cut(s) 751
MvnI CGCG 3 cut(s) 156, 468, 641
MwoI GCNNNNNNNGC 7 cut(s) 122, 315, 324, 383, 438, 710, 719
NciI CCSGG 3 cut(s) 181, 218, 359
NdeII GATC 2 cut(s) 213, 394
NlaIII CATG 3 cut(s) 80, 190, 542
NlaIV GGNNCC 4 cut(s) 256, 474, 604, 800
NspV TTCGAA 1 cut(s) 390
PaeR7I CTCGAG 1 cut(s) 146
PcsI WCGNNNNNNNCGW 3 cut(s) 153, 387, 725
PfeI GAWTC 1 cut(s) 503
PflFI GACNNNGTC 1 cut(s) 721
PinAI ACCGGT 1 cut(s) 481
PkrI GCNGC 6 cut(s) 115, 434, 464, 467, 496, 762
PleI GAGTC 2 cut(s) 338, 816
PpsI GAGTC 2 cut(s) 338, 816
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 749
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 749
PspN4I GGNNCC 4 cut(s) 256, 474, 604, 800
PspPI GGNCC 7 cut(s) 136, 151, 183, 220, 254, 472, 775
PspXI VCTCGAGB 1 cut(s) 146
PsyI GACNNNGTC 1 cut(s) 721
PvuII CAGCTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 2 cut(s) 669, 783
SatI GCNGC 6 cut(s) 114, 433, 463, 466, 495, 761
Sau3AI GATC 2 cut(s) 213, 394
Sau96I GGNCC 7 cut(s) 136, 151, 183, 220, 254, 472, 775
SchI GAGTC 2 cut(s) 338, 817
ScrFI CCNGG 4 cut(s) 181, 218, 359, 751
SduI GDGCHC 2 cut(s) 30, 366
SfcI CTRYAG 1 cut(s) 319
Sfr274I CTCGAG 1 cut(s) 146
SfuI TTCGAA 1 cut(s) 390
SinI GGWCC 3 cut(s) 136, 151, 183
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 1 cut(s) 784
SsiI CCGC 7 cut(s) 154, 229, 432, 463, 466, 617, 692
SspI AATATT 1 cut(s) 205
SspMI CTAG 1 cut(s) 820
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 4 cut(s) 179, 216, 357, 749
TaiI ACGT 3 cut(s) 591, 702, 771
TaqI TCGA 8 cut(s) 147, 212, 297, 312, 381, 390, 486, 627
TaqII GACCGA 1 cut(s) 124
TasI AATT 1 cut(s) 784
TauI GCSGC 3 cut(s) 435, 465, 468
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 2 cut(s) 669, 783
Tru9I TTAA 2 cut(s) 669, 783
TseI GCWGC 3 cut(s) 113, 494, 760
TspDTI ATGAA 2 cut(s) 17, 203
TspGWI ACGGA 1 cut(s) 730
Tth111I GACNNNGTC 1 cut(s) 721
VneI GTGCAC 1 cut(s) 26
VpaK11BI GGWCC 3 cut(s) 136, 151, 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XhoI CTCGAG 1 cut(s) 146
XspI CTAG 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.