Rh4BG300700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013315
Physical Location & Seq
Forward (+)
47189617 .. 47190228
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG300700.1

Sequence Viewer

Length: 612 bp
ATGAAAACCGCACCCTCTTCTTTCTCAAACACCACCCAAGATTCCAAGAAGAAATCTATGAGGAAATCTAGTAGTAAAGGCGGCAGGACTCAGAGCCAGAGCAATAACCACCAGCCGCCGATGTTCGATTGCGAGTGCTTCGACTGCTACAGAAGCTACTGGTTCAAGTGGGACTCCTCCCCCAACCGCGAGCTCATCCACCAGGCCATTGAGGCCTTCGAGGACCACCTGGCCGACGGCGAGAAGCCCAAGAAGAACGCCGGCAGGGGGAAGCGAAGAGACAAGATGGGCCGCCGCGAGGCCCAAAAATCTGCCGACAATTCCTCCAAAGATGAAGTCTTTGTGGCGGAGGAGAATGTAGTGAGCTCAGTTCCCGAGGTGGTGTTGCCTCTGTGCGACGTCGTTTCGGTGGGGTCCCCTGAGAAAGTTGAGGAGTTGGAAGTGGAAGAGCAAGCTCCGGAGGTTAAGGTGGAGACGACGGCGGACGACGTGGCGTTGGTTGTACGCGCCGCGGCGGTGAGCAACCACAAGGGTCTGGCCAGGAAAGTACTTCCGGACGTGTTGGGGCTATTCAATTCTCGTTTGTGGAATCTTTGGAGTCCGAATGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.65

Weight (kDa)

6.45

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13090
fragaria_vesca FvH4_4g23440
malus_domestica MD05G1113800.v1.1 MD13G1122500.v1.1 MD16G1123000.v1.1
prunus_persica Prupe.1G222700_v2.0.a1 Prupe.6G184300_v2.0.a1
pyrus_communis pycom13g10660
rosa_chinensis RchiOBHm_Chr4g0429791
rosa_laevigata RLG00000007042
rosa_multiflora Rmu_co8022056.1_g000001 Rmu_sc0018457.1_g000001
rosa_roxburghii Rroxscaffold_5G00371570
rosa_rugosa Rorug04G0238400
rosa_samantha Rh4BG300700 Rh4CG316200 Rh4DG297800
rosa_wichuraiana Rw4G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 402
AccII CGCG 4 cut(s) 189, 297, 507, 512
AccIII TCCGGA 2 cut(s) 457, 553
AcoI YGGCCR 2 cut(s) 231, 537
AcyI GRCGYC 1 cut(s) 399
AfaI GTAC 2 cut(s) 504, 549
AfiI CCNNNNNNNGG 2 cut(s) 267, 298
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 2 cut(s) 166, 574
AjiI CACGTC 2 cut(s) 490, 559
AjnI CCWGG 3 cut(s) 201, 228, 539
AluBI AGCT 4 cut(s) 156, 193, 366, 455
AluI AGCT 4 cut(s) 156, 193, 366, 455
Alw21I GWGCWC 2 cut(s) 195, 368
Alw26I GTCTC 2 cut(s) 273, 467
Ama87I CYCGRG 1 cut(s) 374
Aor13HI TCCGGA 2 cut(s) 457, 553
AoxI GGCC 6 cut(s) 204, 213, 231, 289, 300, 537
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 4 cut(s) 223, 289, 301, 414
AsuHPI GGTGA 1 cut(s) 529
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 2 cut(s) 223, 414
BalI TGGCCA 1 cut(s) 539
BanII GRGCYC 2 cut(s) 195, 368
Bbv12I GWGCWC 2 cut(s) 195, 368
BccI CCATC 1 cut(s) 280
BceAI ACGGC 2 cut(s) 253, 495
BciT130I CCWGG 3 cut(s) 203, 230, 541
BcoDI GTCTC 2 cut(s) 273, 467
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 148
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 6 cut(s) 82, 116, 292, 295, 510, 513
BlsI GCNGC 6 cut(s) 83, 117, 293, 296, 511, 514
BmcAI AGTACT 1 cut(s) 549
Bme1390I CCNGG 3 cut(s) 203, 230, 541
Bme18I GGWCC 2 cut(s) 223, 414
BmeT110I CYCGRG 1 cut(s) 374
BmgBI CACGTC 2 cut(s) 490, 559
BmgT120I GGNCC 4 cut(s) 223, 289, 301, 414
BmiI GGNNCC 2 cut(s) 415, 416
BmrFI CCNGG 3 cut(s) 203, 230, 541
BsaHI GRCGYC 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 375, 510
BsaWI WCCGGW 2 cut(s) 457, 553
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 298
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 164
BseAI TCCGGA 2 cut(s) 457, 553
BseBI CCWGG 3 cut(s) 203, 230, 541
BseDI CCNNGG 2 cut(s) 375, 510
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 267, 298
BseMII CTCAG 3 cut(s) 104, 381, 411
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 3 cut(s) 166, 365, 446
Bsh1236I CGCG 4 cut(s) 189, 297, 507, 512
BshFI GGCC 6 cut(s) 206, 215, 233, 291, 302, 539
BsiHKAI GWGCWC 2 cut(s) 195, 368
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 3 cut(s) 261, 458, 554
BslFI GGGAC 2 cut(s) 185, 400
BslI CCNNNNNNNGG 2 cut(s) 267, 298
BsmAI GTCTC 2 cut(s) 273, 467
BsmBI CGTCTC 1 cut(s) 467
BsmFI GGGAC 2 cut(s) 185, 400
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 6 cut(s) 206, 215, 233, 291, 302, 539
BsoBI CYCGRG 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 195, 368
Bsp13I TCCGGA 2 cut(s) 457, 553
BspANI GGCC 6 cut(s) 206, 215, 233, 291, 302, 539
BspCNI CTCAG 3 cut(s) 103, 380, 412
BspEI TCCGGA 2 cut(s) 457, 553
BspFNI CGCG 4 cut(s) 189, 297, 507, 512
BspLI GGNNCC 2 cut(s) 415, 416
BspQI GCTCTTC 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 375, 510
BssNI GRCGYC 1 cut(s) 399
Bst2UI CCWGG 3 cut(s) 203, 230, 541
Bst6I CTCTTC 3 cut(s) 22, 271, 441
BstACI GRCGYC 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 191, 262, 453
BstDEI CTNAG 3 cut(s) 90, 367, 420
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 4 cut(s) 189, 297, 507, 512
BstHHI GCGC 1 cut(s) 509
BstMAI GTCTC 2 cut(s) 273, 467
BstMWI GCNNNNNNNGC 3 cut(s) 144, 153, 212
BstNI CCWGG 3 cut(s) 203, 230, 541
BstSCI CCNGG 3 cut(s) 201, 228, 539
BstSFI CTRYAG 1 cut(s) 148
BstUI CGCG 4 cut(s) 189, 297, 507, 512
BsuRI GGCC 6 cut(s) 206, 215, 233, 291, 302, 539
BtgI CCRYGG 1 cut(s) 510
BtrI CACGTC 2 cut(s) 490, 559
BtsCI GGATG 1 cut(s) 195
Cac8I GCNNGC 3 cut(s) 191, 262, 453
CfoI GCGC 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 4 cut(s) 223, 289, 301, 414
Cfr42I CCGCGG 1 cut(s) 513
Csp6I GTAC 2 cut(s) 503, 548
CviQI GTAC 2 cut(s) 503, 548
DdeI CTNAG 3 cut(s) 90, 367, 420
EaeI YGGCCR 2 cut(s) 231, 537
Eam1104I CTCTTC 3 cut(s) 22, 271, 441
EarI CTCTTC 3 cut(s) 22, 271, 441
EciI GGCGGA 2 cut(s) 362, 497
Ecl136II GAGCTC 2 cut(s) 193, 366
Eco147I AGGCCT 1 cut(s) 215
Eco24I GRGCYC 2 cut(s) 195, 368
Eco47I GGWCC 2 cut(s) 223, 414
Eco53kI GAGCTC 2 cut(s) 193, 366
Eco88I CYCGRG 1 cut(s) 374
EcoICRI GAGCTC 2 cut(s) 193, 366
EcoO109I RGGNCCY 1 cut(s) 414
EcoRII CCWGG 3 cut(s) 201, 228, 539
EcoT38I GRGCYC 2 cut(s) 195, 368
Esp3I CGTCTC 1 cut(s) 467
FaiI YATR 1 cut(s) 59
FaqI GGGAC 2 cut(s) 185, 400
Fnu4HI GCNGC 6 cut(s) 82, 116, 292, 295, 510, 513
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 2 cut(s) 195, 368
Fsp4HI GCNGC 6 cut(s) 82, 116, 292, 295, 510, 513
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 508
GluI GCNGC 6 cut(s) 82, 116, 292, 295, 510, 513
HaeIII GGCC 6 cut(s) 206, 215, 233, 291, 302, 539
HapII CCGG 3 cut(s) 261, 458, 554
HhaI GCGC 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 399
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HinfI GANTC 5 cut(s) 41, 88, 173, 589, 598
HpaII CCGG 3 cut(s) 261, 458, 554
HphI GGTGA 1 cut(s) 529
Hpy188I TCNGA 2 cut(s) 93, 603
Hpy188III TCNNGA 3 cut(s) 374, 458, 554
Hpy99I CGWCG 5 cut(s) 239, 401, 404, 481, 491
HpyAV CCTTC 1 cut(s) 226
HpyCH4IV ACGT 3 cut(s) 399, 489, 558
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 153, 212
HpyF3I CTNAG 3 cut(s) 90, 367, 420
HpySE526I ACGT 3 cut(s) 399, 489, 558
Hsp92I GRCGYC 1 cut(s) 399
HspAI GCGC 1 cut(s) 507
KflI GGGWCCC 1 cut(s) 414
Kpn2I TCCGGA 2 cut(s) 457, 553
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
KspI CCGCGG 1 cut(s) 513
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 1 cut(s) 460
MaeI CTAG 1 cut(s) 69
MaeII ACGT 3 cut(s) 399, 489, 558
MboII GAAGA 5 cut(s) 9, 61, 265, 288, 458
MhlI GDGCHC 2 cut(s) 195, 368
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 2 cut(s) 319, 574
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 3 cut(s) 82, 167, 607
MmeI TCCRAC 1 cut(s) 417
Mox20I TGGCCA 1 cut(s) 539
MroI TCCGGA 2 cut(s) 457, 553
MroNI GCCGGC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 539
MseI TTAA 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 3 cut(s) 261, 458, 554
MspR9I CCNGG 3 cut(s) 203, 230, 541
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 3 cut(s) 203, 230, 541
MvnI CGCG 4 cut(s) 189, 297, 507, 512
MwoI GCNNNNNNNGC 3 cut(s) 144, 153, 212
NaeI GCCGGC 1 cut(s) 262
NgoMIV GCCGGC 1 cut(s) 260
NlaIV GGNNCC 2 cut(s) 415, 416
PceI AGGCCT 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 441
PctI GAATGC 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 41, 589
PkrI GCNGC 6 cut(s) 83, 117, 293, 296, 511, 514
PleI GAGTC 3 cut(s) 82, 167, 606
PpsI GAGTC 3 cut(s) 82, 167, 606
PpuMI RGGWCCY 1 cut(s) 414
Psp124BI GAGCTC 2 cut(s) 195, 368
Psp5II RGGWCCY 1 cut(s) 414
Psp6I CCWGG 3 cut(s) 201, 228, 539
PspGI CCWGG 3 cut(s) 201, 228, 539
PspN4I GGNNCC 2 cut(s) 415, 416
PspPI GGNCC 4 cut(s) 223, 289, 301, 414
PspPPI RGGWCCY 1 cut(s) 414
RsaI GTAC 2 cut(s) 504, 549
RsaNI GTAC 2 cut(s) 503, 548
SacI GAGCTC 2 cut(s) 195, 368
SacII CCGCGG 1 cut(s) 513
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 6 cut(s) 82, 116, 292, 295, 510, 513
Sau96I GGNCC 4 cut(s) 223, 289, 301, 414
ScaI AGTACT 1 cut(s) 549
SchI GAGTC 3 cut(s) 82, 167, 607
ScrFI CCNGG 3 cut(s) 203, 230, 541
SduI GDGCHC 2 cut(s) 195, 368
SfcI CTRYAG 1 cut(s) 148
SfiI GGCCNNNNNGGCC 1 cut(s) 212
Sfr303I CCGCGG 1 cut(s) 513
SgrBI CCGCGG 1 cut(s) 513
SinI GGWCC 2 cut(s) 223, 414
Sse9I AATT 2 cut(s) 319, 574
SseBI AGGCCT 1 cut(s) 215
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 2 cut(s) 195, 368
StuI AGGCCT 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 201, 228, 539
TaiI ACGT 3 cut(s) 402, 492, 561
TaqI TCGA 3 cut(s) 126, 141, 219
TasI AATT 2 cut(s) 319, 574
TatI WGTACW 1 cut(s) 547
TauI GCSGC 6 cut(s) 84, 118, 294, 297, 512, 515
TfiI GAWTC 2 cut(s) 41, 589
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TspDTI ATGAA 2 cut(s) 17, 348
VpaK11BI GGWCC 2 cut(s) 223, 414
XspI CTAG 1 cut(s) 69
ZraI GACGTC 1 cut(s) 400
ZrmI AGTACT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.