RchiOBHm_Chr4g0429791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013315
Physical Location & Seq
Forward (+)
54516882 .. 54518586
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39856

Sequence Viewer

Length: 801 bp
ATGAAGATAAAGAACAAAGGCAAAGTCCACCCATCTCCTTCCTCCTCGTCCTCTTCCTCCCCCTCCTCTTCTTCCGATGGAGTTGTTCTCTCCGTGCTCCAGCTACTCCCAGCTGCTATTCTAGCTCTGGCGACGGTTCTCTCCCTCGAGGACCGCGAGGTCTTGGCTTACATGATAACCCGTTCCATGAAAACCGCACCCTCTTTTTCTTTCTCAGATACCACCCAAGATTCCAAGAAGAAATCTATGAGGAAATCTAGTAGTAAAGCCGGCAGGACTGAGAGCCAGAGCAACAACCACCAGCCGCCGATGTTCGATTGCGAGTGCTTCGACTGCTACAGAAGCTACTGGTTTAAGTGGGACTCCTCCCCCAACCGCGAGCTCATCCACCAGGCCATTGAGGCCTTCGAGGACCACCTGGCCCACGGCGAGAGGCCCAAGAAGAACGCCGGCAGGGGGAAGCGAAGAGACAAGATGGGCCGCCGCGAGGCCCAAAAATCTGCCGATAATTCCTCCAAAGATGAAGTCTTTGTGGCGGAGGAGAATGTAGTGAGCTCAGTTGCCGAGGTGGTGTTGCCTCTGTGCGACGTCGTTTCGGTGGGGTCCCCGGAGAAAGTTGAGGAGTTGGAAGTGGAAGAGCAAGCTGTGGAGGTTAAGACGGAGACGACGGCGGACGACGTGGCGTTGGTTGTACGCGCCGCGGCGGTGAGCAACCACAAGGGCCTGGCCAGGAAAGTACTTCCGGACGTGTTGGGGCTATTCAATTCTCGTTTGTGGAATCTTTGGAGTCCGAATGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.28

Weight (kDa)

7.02

Isoelectric Point (pI)

64.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13090
fragaria_vesca FvH4_4g23440
malus_domestica MD05G1113800.v1.1 MD13G1122500.v1.1 MD16G1123000.v1.1
prunus_persica Prupe.1G222700_v2.0.a1 Prupe.6G184300_v2.0.a1
pyrus_communis pycom13g10660
rosa_chinensis RchiOBHm_Chr4g0429791
rosa_laevigata RLG00000007042
rosa_multiflora Rmu_co8022056.1_g000001 Rmu_sc0018457.1_g000001
rosa_roxburghii Rroxscaffold_5G00371570
rosa_rugosa Rorug04G0238400
rosa_samantha Rh4BG300700 Rh4CG316200 Rh4DG297800
rosa_wichuraiana Rw4G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AatII GACGTC 1 cut(s) 591
AbsI CCTCGAGG 1 cut(s) 146
AccII CGCG 5 cut(s) 156, 378, 486, 696, 701
AccIII TCCGGA 1 cut(s) 742
AcoI YGGCCR 1 cut(s) 726
AcyI GRCGYC 1 cut(s) 588
AfaI GTAC 2 cut(s) 693, 738
AfiI CCNNNNNNNGG 2 cut(s) 456, 487
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 1 cut(s) 763
AjiI CACGTC 2 cut(s) 679, 748
AjnI CCWGG 4 cut(s) 390, 417, 723, 728
AluBI AGCT 7 cut(s) 103, 113, 125, 345, 382, 555, 644
AluI AGCT 7 cut(s) 103, 113, 125, 345, 382, 555, 644
Alw21I GWGCWC 3 cut(s) 99, 384, 557
Alw26I GTCTC 2 cut(s) 462, 656
Ama87I CYCGRG 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 742
AoxI GGCC 8 cut(s) 393, 402, 420, 434, 478, 489, 721, 726
ApeKI GCWGC 1 cut(s) 113
ArsI GACNNNNNNTTYG 4 cut(s) 9, 41, 510, 542
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 8 cut(s) 151, 412, 421, 435, 478, 490, 603, 721
AsuC2I CCSGG 1 cut(s) 608
AsuHPI GGTGA 1 cut(s) 718
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 3 cut(s) 151, 412, 603
BalI TGGCCA 1 cut(s) 728
BanII GRGCYC 2 cut(s) 384, 557
Bbv12I GWGCWC 3 cut(s) 99, 384, 557
BbvI GCAGC 1 cut(s) 100
BccI CCATC 3 cut(s) 40, 71, 469
BceAI ACGGC 2 cut(s) 442, 684
BciT130I CCWGG 4 cut(s) 392, 419, 725, 730
BcnI CCSGG 1 cut(s) 608
BcoDI GTCTC 2 cut(s) 462, 656
BfaI CTAG 2 cut(s) 122, 258
BfmI CTRYAG 1 cut(s) 337
BglI GCCNNNNNGGC 1 cut(s) 401
BisI GCNGC 6 cut(s) 114, 305, 481, 484, 699, 702
BlsI GCNGC 6 cut(s) 115, 306, 482, 485, 700, 703
BmcAI AGTACT 1 cut(s) 738
Bme1390I CCNGG 5 cut(s) 392, 419, 608, 725, 730
Bme18I GGWCC 3 cut(s) 151, 412, 603
BmeT110I CYCGRG 1 cut(s) 146
BmgBI CACGTC 2 cut(s) 679, 748
BmgT120I GGNCC 8 cut(s) 151, 412, 421, 435, 478, 490, 603, 721
BmiI GGNNCC 2 cut(s) 604, 605
BmrFI CCNGG 5 cut(s) 392, 419, 608, 725, 730
BplI GAGNNNNNCTC 2 cut(s) 72, 104
BpmI CTGGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 588
BsaJI CCNNGG 4 cut(s) 424, 564, 606, 699
BsaWI WCCGGW 1 cut(s) 742
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 487
Bse118I RCCGGY 2 cut(s) 269, 449
Bse1I ACTGG 1 cut(s) 353
BseAI TCCGGA 1 cut(s) 742
BseBI CCWGG 4 cut(s) 392, 419, 725, 730
BseDI CCNNGG 4 cut(s) 424, 564, 606, 699
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 2 cut(s) 456, 487
BseMII CTCAG 3 cut(s) 228, 270, 570
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 5 cut(s) 34, 55, 355, 554, 635
BseXI GCAGC 1 cut(s) 100
BseYI CCCAGC 1 cut(s) 109
Bsh1236I CGCG 5 cut(s) 156, 378, 486, 696, 701
BshFI GGCC 8 cut(s) 395, 404, 422, 436, 480, 491, 723, 728
BsiHKAI GWGCWC 3 cut(s) 99, 384, 557
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 4 cut(s) 270, 450, 608, 743
BslFI GGGAC 2 cut(s) 374, 589
BslI CCNNNNNNNGG 2 cut(s) 456, 487
BsmAI GTCTC 2 cut(s) 462, 656
BsmBI CGTCTC 1 cut(s) 656
BsmFI GGGAC 2 cut(s) 374, 589
BsmI GAATGC 1 cut(s) 799
BsnI GGCC 8 cut(s) 395, 404, 422, 436, 480, 491, 723, 728
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 3 cut(s) 99, 384, 557
Bsp13I TCCGGA 1 cut(s) 742
BspANI GGCC 8 cut(s) 395, 404, 422, 436, 480, 491, 723, 728
BspCNI CTCAG 3 cut(s) 227, 271, 569
BspEI TCCGGA 1 cut(s) 742
BspFNI CGCG 5 cut(s) 156, 378, 486, 696, 701
BspLI GGNNCC 2 cut(s) 604, 605
BspQI GCTCTTC 1 cut(s) 630
BsrFI RCCGGY 2 cut(s) 269, 449
BsrI ACTGG 1 cut(s) 353
BssAI RCCGGY 2 cut(s) 269, 449
BssECI CCNNGG 4 cut(s) 424, 564, 606, 699
BssNI GRCGYC 1 cut(s) 588
Bst2UI CCWGG 4 cut(s) 392, 419, 725, 730
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 4 cut(s) 58, 73, 460, 630
BstACI GRCGYC 1 cut(s) 588
BstC8I GCNNGC 4 cut(s) 271, 380, 451, 642
BstDEI CTNAG 3 cut(s) 214, 279, 556
BstDSI CCRYGG 2 cut(s) 424, 699
BstF5I GGATG 1 cut(s) 384
BstFNI CGCG 5 cut(s) 156, 378, 486, 696, 701
BstHHI GCGC 1 cut(s) 698
BstMAI GTCTC 2 cut(s) 462, 656
BstMWI GCNNNNNNNGC 4 cut(s) 122, 333, 342, 401
BstNI CCWGG 4 cut(s) 392, 419, 725, 730
BstSCI CCNGG 5 cut(s) 390, 417, 606, 723, 728
BstSFI CTRYAG 1 cut(s) 337
BstUI CGCG 5 cut(s) 156, 378, 486, 696, 701
BstV1I GCAGC 1 cut(s) 100
BsuRI GGCC 8 cut(s) 395, 404, 422, 436, 480, 491, 723, 728
BtgI CCRYGG 2 cut(s) 424, 699
BtrI CACGTC 2 cut(s) 679, 748
BtsCI GGATG 1 cut(s) 384
Cac8I GCNNGC 4 cut(s) 271, 380, 451, 642
CfoI GCGC 1 cut(s) 698
Cfr10I RCCGGY 2 cut(s) 269, 449
Cfr13I GGNCC 8 cut(s) 151, 412, 421, 435, 478, 490, 603, 721
Cfr42I CCGCGG 1 cut(s) 702
Csp6I GTAC 2 cut(s) 692, 737
CviAII CATG 2 cut(s) 172, 187
CviQI GTAC 2 cut(s) 692, 737
DdeI CTNAG 3 cut(s) 214, 279, 556
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 726
Eam1104I CTCTTC 4 cut(s) 58, 73, 460, 630
EarI CTCTTC 4 cut(s) 58, 73, 460, 630
EciI GGCGGA 2 cut(s) 551, 686
Ecl136II GAGCTC 2 cut(s) 382, 555
Eco147I AGGCCT 1 cut(s) 404
Eco24I GRGCYC 2 cut(s) 384, 557
Eco47I GGWCC 3 cut(s) 151, 412, 603
Eco53kI GAGCTC 2 cut(s) 382, 555
Eco88I CYCGRG 1 cut(s) 146
EcoICRI GAGCTC 2 cut(s) 382, 555
EcoO109I RGGNCCY 2 cut(s) 603, 721
EcoRII CCWGG 4 cut(s) 390, 417, 723, 728
EcoT38I GRGCYC 2 cut(s) 384, 557
Esp3I CGTCTC 1 cut(s) 656
FaeI CATG 2 cut(s) 175, 190
FaiI YATR 3 cut(s) 173, 188, 248
FaqI GGGAC 2 cut(s) 374, 589
FatI CATG 2 cut(s) 171, 186
Fnu4HI GCNGC 6 cut(s) 114, 305, 481, 484, 699, 702
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 2 cut(s) 384, 557
Fsp4HI GCNGC 6 cut(s) 114, 305, 481, 484, 699, 702
FspBI CTAG 2 cut(s) 122, 258
GlaI GCGC 1 cut(s) 697
GluI GCNGC 6 cut(s) 114, 305, 481, 484, 699, 702
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 8 cut(s) 395, 404, 422, 436, 480, 491, 723, 728
HapII CCGG 4 cut(s) 270, 450, 608, 743
HhaI GCGC 1 cut(s) 698
Hin1I GRCGYC 1 cut(s) 588
Hin1II CATG 2 cut(s) 175, 190
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HinfI GANTC 4 cut(s) 230, 362, 778, 787
HpaII CCGG 4 cut(s) 270, 450, 608, 743
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 76, 217, 792
Hpy188III TCNNGA 1 cut(s) 743
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 5 cut(s) 136, 590, 593, 670, 680
HpyAV CCTTC 2 cut(s) 48, 415
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 3 cut(s) 588, 678, 747
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 333, 342, 401
HpyF3I CTNAG 3 cut(s) 214, 279, 556
HpySE526I ACGT 3 cut(s) 588, 678, 747
Hsp92I GRCGYC 1 cut(s) 588
Hsp92II CATG 2 cut(s) 175, 190
HspAI GCGC 1 cut(s) 696
KflI GGGWCCC 1 cut(s) 603
Kpn2I TCCGGA 1 cut(s) 742
KroI GCCGGC 2 cut(s) 269, 449
KroNI GCCGGC 2 cut(s) 271, 451
KspI CCGCGG 1 cut(s) 702
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 1 cut(s) 102
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 2 cut(s) 122, 258
MaeII ACGT 3 cut(s) 588, 678, 747
MboII GAAGA 8 cut(s) 16, 45, 60, 63, 250, 454, 477, 647
MhlI GDGCHC 3 cut(s) 99, 384, 557
MlsI TGGCCA 1 cut(s) 728
MluCI AATT 2 cut(s) 508, 763
MluNI TGGCCA 1 cut(s) 728
MlyI GAGTC 2 cut(s) 356, 796
MmeI TCCRAC 1 cut(s) 606
Mox20I TGGCCA 1 cut(s) 728
MroI TCCGGA 1 cut(s) 742
MroNI GCCGGC 2 cut(s) 269, 449
MscI TGGCCA 1 cut(s) 728
MseI TTAA 2 cut(s) 354, 654
Msp20I TGGCCA 1 cut(s) 728
MspA1I CMGCKG 2 cut(s) 113, 701
MspI CCGG 4 cut(s) 270, 450, 608, 743
MspR9I CCNGG 5 cut(s) 392, 419, 608, 725, 730
Mva1269I GAATGC 1 cut(s) 799
MvaI CCWGG 4 cut(s) 392, 419, 725, 730
MvnI CGCG 5 cut(s) 156, 378, 486, 696, 701
MwoI GCNNNNNNNGC 4 cut(s) 122, 333, 342, 401
NaeI GCCGGC 2 cut(s) 271, 451
NciI CCSGG 1 cut(s) 608
NgoMIV GCCGGC 2 cut(s) 269, 449
NlaIII CATG 2 cut(s) 175, 190
NlaIV GGNNCC 2 cut(s) 604, 605
NmeAIII GCCGAG 1 cut(s) 589
PaeR7I CTCGAG 1 cut(s) 146
PceI AGGCCT 1 cut(s) 404
PciSI GCTCTTC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 799
PdiI GCCGGC 2 cut(s) 271, 451
PfeI GAWTC 2 cut(s) 230, 778
PkrI GCNGC 6 cut(s) 115, 306, 482, 485, 700, 703
PleI GAGTC 2 cut(s) 356, 795
PpsI GAGTC 2 cut(s) 356, 795
PpuMI RGGWCCY 1 cut(s) 603
Psp124BI GAGCTC 2 cut(s) 384, 557
Psp5II RGGWCCY 1 cut(s) 603
Psp6I CCWGG 4 cut(s) 390, 417, 723, 728
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 4 cut(s) 390, 417, 723, 728
PspN4I GGNNCC 2 cut(s) 604, 605
PspPI GGNCC 8 cut(s) 151, 412, 421, 435, 478, 490, 603, 721
PspPPI RGGWCCY 1 cut(s) 603
PspXI VCTCGAGB 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 2 cut(s) 693, 738
RsaNI GTAC 2 cut(s) 692, 737
SacI GAGCTC 2 cut(s) 384, 557
SacII CCGCGG 1 cut(s) 702
SapI GCTCTTC 1 cut(s) 630
SaqAI TTAA 2 cut(s) 354, 654
SatI GCNGC 6 cut(s) 114, 305, 481, 484, 699, 702
Sau96I GGNCC 8 cut(s) 151, 412, 421, 435, 478, 490, 603, 721
ScaI AGTACT 1 cut(s) 738
SchI GAGTC 2 cut(s) 356, 796
ScrFI CCNGG 5 cut(s) 392, 419, 608, 725, 730
SduI GDGCHC 3 cut(s) 99, 384, 557
SfcI CTRYAG 1 cut(s) 337
SfiI GGCCNNNNNGGCC 1 cut(s) 401
Sfr274I CTCGAG 1 cut(s) 146
Sfr303I CCGCGG 1 cut(s) 702
SgrBI CCGCGG 1 cut(s) 702
SinI GGWCC 3 cut(s) 151, 412, 603
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 508, 763
SseBI AGGCCT 1 cut(s) 404
SspMI CTAG 2 cut(s) 122, 258
SstI GAGCTC 2 cut(s) 384, 557
StuI AGGCCT 1 cut(s) 404
StyD4I CCNGG 5 cut(s) 390, 417, 606, 723, 728
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 3 cut(s) 591, 681, 750
TaqI TCGA 4 cut(s) 147, 315, 330, 408
TasI AATT 2 cut(s) 508, 763
TatI WGTACW 1 cut(s) 736
TauI GCSGC 5 cut(s) 307, 483, 486, 701, 704
TfiI GAWTC 2 cut(s) 230, 778
Tru1I TTAA 2 cut(s) 354, 654
Tru9I TTAA 2 cut(s) 354, 654
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 17, 203, 537
TspGWI ACGGA 2 cut(s) 82, 674
VpaK11BI GGWCC 3 cut(s) 151, 412, 603
XhoI CTCGAG 1 cut(s) 146
XspI CTAG 2 cut(s) 122, 258
ZraI GACGTC 1 cut(s) 589
ZrmI AGTACT 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.