Rh4DG297800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0013315
Physical Location & Seq
Forward (+)
51962575 .. 51964528
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG297800.1

Sequence Viewer

Length: 810 bp
ATGAAGATAAAGAACAAAGGCAAAGTCCACCCATCTCCTTCCTCATCTTCCTCTTCCTCTTCCTCCTCCTCCTCATCTTCTTCCGATGGAGTTGTTCTCTCCGTGCTCCAGCTACTCCCAGCTGCTATTCTAGCTCTGGCCACGGTTCTCTCCCTTGAGGACCGCGAGGTGTTGGCTTACATGATAACCCGTTCCATGAAAACCGCACCCTCTTTTTCTTTCTCAGACACCACCCAAGATTCCAAGAAGAAATCTATGAGGAAATCTAGTAGTAAAGCCGGCAGGACTCAGAGCCAGAGCAACAACCACCAGCCGCCGATGTTCGATTGCGAGTGCTTCGACTGCTACAGAAGCTACTGGTTTAAGTGGGACTCCTCCCCCAACCGCGAGCTCATCCACCAGGCCATTGAGGCCTTCGAGGACCACCTGGCCCACGGTGAGAAGCCCAAGAAGAACGCCGGCAGGGGGAAGCGAAGAGACAAGATGGGCCGCCGCGAGGCCCAAAAATCAGCCGATAATTCCTCCAAAGATGAAGTCTTTGTGGCGGAGGAGAATGTAGGGAGCTCAGTTGCCGAGGTGGTGTTACCTCTGTGCGACGTCGTTTCGGTGGGGTCCCCGGAGAAAGTTGAGGAGTTGGAAGTGGAAGAGCAAGCTGTGGAGGTTAAGACGGAGACGACGGCGGACGACGTGGCGTTGGTTGTACGCGCCGCGGCGGTGAGCAACCACAAGGGCCTGGCCAGGAAAGTACTTCCGGACGTGTTGGGGCTATTCAATTCTCGTTTGTGGAATCTTTGGAGTCCGAATGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

29.46

Weight (kDa)

7.68

Isoelectric Point (pI)

64.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13090
fragaria_vesca FvH4_4g23440
malus_domestica MD05G1113800.v1.1 MD13G1122500.v1.1 MD16G1123000.v1.1
prunus_persica Prupe.1G222700_v2.0.a1 Prupe.6G184300_v2.0.a1
pyrus_communis pycom13g10660
rosa_chinensis RchiOBHm_Chr4g0429791
rosa_laevigata RLG00000007042
rosa_multiflora Rmu_co8022056.1_g000001 Rmu_sc0018457.1_g000001
rosa_roxburghii Rroxscaffold_5G00371570
rosa_rugosa Rorug04G0238400
rosa_samantha Rh4BG300700 Rh4CG316200 Rh4DG297800
rosa_wichuraiana Rw4G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 600
AccII CGCG 5 cut(s) 165, 387, 495, 705, 710
AccIII TCCGGA 1 cut(s) 751
AcoI YGGCCR 2 cut(s) 138, 735
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 2 cut(s) 702, 747
AfiI CCNNNNNNNGG 2 cut(s) 465, 496
AflIII ACRYGT 1 cut(s) 756
AgsI TTSAA 1 cut(s) 772
AjiI CACGTC 2 cut(s) 688, 757
AjnI CCWGG 4 cut(s) 399, 426, 732, 737
AluBI AGCT 7 cut(s) 112, 122, 134, 354, 391, 564, 653
AluI AGCT 7 cut(s) 112, 122, 134, 354, 391, 564, 653
Alw21I GWGCWC 3 cut(s) 108, 393, 566
Alw26I GTCTC 2 cut(s) 471, 665
Aor13HI TCCGGA 1 cut(s) 751
AoxI GGCC 8 cut(s) 138, 402, 411, 429, 487, 498, 730, 735
ApeKI GCWGC 1 cut(s) 122
ArsI GACNNNNNNTTYG 4 cut(s) 9, 41, 519, 551
AspLEI GCGC 1 cut(s) 707
AspS9I GGNCC 7 cut(s) 160, 421, 430, 487, 499, 612, 730
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 2 cut(s) 449, 727
AvaII GGWCC 3 cut(s) 160, 421, 612
BalI TGGCCA 2 cut(s) 140, 737
BanII GRGCYC 2 cut(s) 393, 566
Bbv12I GWGCWC 3 cut(s) 108, 393, 566
BbvI GCAGC 1 cut(s) 109
BccI CCATC 3 cut(s) 40, 80, 478
BceAI ACGGC 1 cut(s) 693
BciT130I CCWGG 4 cut(s) 401, 428, 734, 739
BcnI CCSGG 1 cut(s) 617
BcoDI GTCTC 2 cut(s) 471, 665
BfaI CTAG 2 cut(s) 131, 267
BfmI CTRYAG 1 cut(s) 346
BglI GCCNNNNNGGC 1 cut(s) 410
BisI GCNGC 6 cut(s) 123, 314, 490, 493, 708, 711
BlsI GCNGC 6 cut(s) 124, 315, 491, 494, 709, 712
BmcAI AGTACT 1 cut(s) 747
Bme1390I CCNGG 5 cut(s) 401, 428, 617, 734, 739
Bme18I GGWCC 3 cut(s) 160, 421, 612
BmgBI CACGTC 2 cut(s) 688, 757
BmgT120I GGNCC 7 cut(s) 160, 421, 430, 487, 499, 612, 730
BmiI GGNNCC 2 cut(s) 613, 614
BmrFI CCNGG 5 cut(s) 401, 428, 617, 734, 739
BplI GAGNNNNNCTC 2 cut(s) 81, 113
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 617
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 5 cut(s) 141, 433, 573, 615, 708
BsaWI WCCGGW 1 cut(s) 751
Bsc4I CCNNNNNNNGG 2 cut(s) 465, 496
Bse118I RCCGGY 2 cut(s) 278, 458
Bse1I ACTGG 1 cut(s) 362
BseAI TCCGGA 1 cut(s) 751
BseBI CCWGG 4 cut(s) 401, 428, 734, 739
BseDI CCNNGG 5 cut(s) 141, 433, 573, 615, 708
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 465, 496
BseMII CTCAG 3 cut(s) 237, 302, 579
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 6 cut(s) 55, 58, 61, 364, 563, 644
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 118
Bsh1236I CGCG 5 cut(s) 165, 387, 495, 705, 710
BshFI GGCC 8 cut(s) 140, 404, 413, 431, 489, 500, 732, 737
BsiHKAI GWGCWC 3 cut(s) 108, 393, 566
BsiSI CCGG 4 cut(s) 279, 459, 617, 752
BslFI GGGAC 2 cut(s) 383, 598
BslI CCNNNNNNNGG 2 cut(s) 465, 496
BsmAI GTCTC 2 cut(s) 471, 665
BsmBI CGTCTC 1 cut(s) 665
BsmFI GGGAC 2 cut(s) 383, 598
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 8 cut(s) 140, 404, 413, 431, 489, 500, 732, 737
Bsp1286I GDGCHC 3 cut(s) 108, 393, 566
Bsp13I TCCGGA 1 cut(s) 751
BspANI GGCC 8 cut(s) 140, 404, 413, 431, 489, 500, 732, 737
BspCNI CTCAG 3 cut(s) 236, 301, 578
BspEI TCCGGA 1 cut(s) 751
BspFNI CGCG 5 cut(s) 165, 387, 495, 705, 710
BspLI GGNNCC 2 cut(s) 613, 614
BspQI GCTCTTC 1 cut(s) 639
BsrFI RCCGGY 2 cut(s) 278, 458
BsrI ACTGG 1 cut(s) 362
BssAI RCCGGY 2 cut(s) 278, 458
BssECI CCNNGG 5 cut(s) 141, 433, 573, 615, 708
BssNI GRCGYC 1 cut(s) 597
Bst2UI CCWGG 4 cut(s) 401, 428, 734, 739
Bst4CI ACNGT 2 cut(s) 145, 437
Bst6I CTCTTC 4 cut(s) 58, 64, 469, 639
BstACI GRCGYC 1 cut(s) 597
BstC8I GCNNGC 4 cut(s) 280, 389, 460, 651
BstDEI CTNAG 3 cut(s) 223, 288, 565
BstDSI CCRYGG 3 cut(s) 141, 433, 708
BstF5I GGATG 1 cut(s) 393
BstFNI CGCG 5 cut(s) 165, 387, 495, 705, 710
BstHHI GCGC 1 cut(s) 707
BstMAI GTCTC 2 cut(s) 471, 665
BstMWI GCNNNNNNNGC 4 cut(s) 131, 342, 351, 410
BstNI CCWGG 4 cut(s) 401, 428, 734, 739
BstSCI CCNGG 5 cut(s) 399, 426, 615, 732, 737
BstSFI CTRYAG 1 cut(s) 346
BstUI CGCG 5 cut(s) 165, 387, 495, 705, 710
BstV1I GCAGC 1 cut(s) 109
BsuRI GGCC 8 cut(s) 140, 404, 413, 431, 489, 500, 732, 737
BtgI CCRYGG 3 cut(s) 141, 433, 708
BtrI CACGTC 2 cut(s) 688, 757
BtsCI GGATG 1 cut(s) 393
Cac8I GCNNGC 4 cut(s) 280, 389, 460, 651
CfoI GCGC 1 cut(s) 707
Cfr10I RCCGGY 2 cut(s) 278, 458
Cfr13I GGNCC 7 cut(s) 160, 421, 430, 487, 499, 612, 730
Cfr42I CCGCGG 1 cut(s) 711
Csp6I GTAC 2 cut(s) 701, 746
CviAII CATG 2 cut(s) 181, 196
CviQI GTAC 2 cut(s) 701, 746
DdeI CTNAG 3 cut(s) 223, 288, 565
EaeI YGGCCR 2 cut(s) 138, 735
Eam1104I CTCTTC 4 cut(s) 58, 64, 469, 639
EarI CTCTTC 4 cut(s) 58, 64, 469, 639
EciI GGCGGA 2 cut(s) 560, 695
Ecl136II GAGCTC 2 cut(s) 391, 564
Eco147I AGGCCT 1 cut(s) 413
Eco24I GRGCYC 2 cut(s) 393, 566
Eco47I GGWCC 3 cut(s) 160, 421, 612
Eco53kI GAGCTC 2 cut(s) 391, 564
EcoICRI GAGCTC 2 cut(s) 391, 564
EcoO109I RGGNCCY 2 cut(s) 612, 730
EcoRII CCWGG 4 cut(s) 399, 426, 732, 737
EcoT38I GRGCYC 2 cut(s) 393, 566
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 2 cut(s) 184, 199
FaiI YATR 3 cut(s) 182, 197, 257
FaqI GGGAC 2 cut(s) 383, 598
FatI CATG 2 cut(s) 180, 195
Fnu4HI GCNGC 6 cut(s) 123, 314, 490, 493, 708, 711
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 2 cut(s) 393, 566
Fsp4HI GCNGC 6 cut(s) 123, 314, 490, 493, 708, 711
FspBI CTAG 2 cut(s) 131, 267
GlaI GCGC 1 cut(s) 706
GluI GCNGC 6 cut(s) 123, 314, 490, 493, 708, 711
GsaI CCCAGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 8 cut(s) 140, 404, 413, 431, 489, 500, 732, 737
HapII CCGG 4 cut(s) 279, 459, 617, 752
HhaI GCGC 1 cut(s) 707
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 2 cut(s) 184, 199
Hin6I GCGC 1 cut(s) 705
HinP1I GCGC 1 cut(s) 705
HinfI GANTC 5 cut(s) 239, 286, 371, 787, 796
HpaII CCGG 4 cut(s) 279, 459, 617, 752
HphI GGTGA 2 cut(s) 449, 727
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 4 cut(s) 85, 226, 291, 801
Hpy188III TCNNGA 1 cut(s) 752
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 4 cut(s) 599, 602, 679, 689
HpyAV CCTTC 2 cut(s) 48, 424
HpyCH4III ACNGT 2 cut(s) 145, 437
HpyCH4IV ACGT 3 cut(s) 597, 687, 756
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 342, 351, 410
HpyF3I CTNAG 3 cut(s) 223, 288, 565
HpySE526I ACGT 3 cut(s) 597, 687, 756
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 2 cut(s) 184, 199
HspAI GCGC 1 cut(s) 705
KflI GGGWCCC 1 cut(s) 612
Kpn2I TCCGGA 1 cut(s) 751
KroI GCCGGC 2 cut(s) 278, 458
KroNI GCCGGC 2 cut(s) 280, 460
KspI CCGCGG 1 cut(s) 711
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 2 cut(s) 111, 561
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 2 cut(s) 131, 267
MaeII ACGT 3 cut(s) 597, 687, 756
MaeIII GTNAC 1 cut(s) 582
MhlI GDGCHC 3 cut(s) 108, 393, 566
MlsI TGGCCA 2 cut(s) 140, 737
MluCI AATT 2 cut(s) 517, 772
MluNI TGGCCA 2 cut(s) 140, 737
MlyI GAGTC 3 cut(s) 280, 365, 805
MmeI TCCRAC 1 cut(s) 615
Mox20I TGGCCA 2 cut(s) 140, 737
MroI TCCGGA 1 cut(s) 751
MroNI GCCGGC 2 cut(s) 278, 458
MscI TGGCCA 2 cut(s) 140, 737
MseI TTAA 2 cut(s) 363, 663
Msp20I TGGCCA 2 cut(s) 140, 737
MspA1I CMGCKG 2 cut(s) 122, 710
MspI CCGG 4 cut(s) 279, 459, 617, 752
MspR9I CCNGG 5 cut(s) 401, 428, 617, 734, 739
Mva1269I GAATGC 1 cut(s) 808
MvaI CCWGG 4 cut(s) 401, 428, 734, 739
MvnI CGCG 5 cut(s) 165, 387, 495, 705, 710
MwoI GCNNNNNNNGC 4 cut(s) 131, 342, 351, 410
NaeI GCCGGC 2 cut(s) 280, 460
NciI CCSGG 1 cut(s) 617
NgoMIV GCCGGC 2 cut(s) 278, 458
NlaIII CATG 2 cut(s) 184, 199
NlaIV GGNNCC 2 cut(s) 613, 614
NmeAIII GCCGAG 1 cut(s) 598
PceI AGGCCT 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 639
PctI GAATGC 1 cut(s) 808
PdiI GCCGGC 2 cut(s) 280, 460
PfeI GAWTC 2 cut(s) 239, 787
PkrI GCNGC 6 cut(s) 124, 315, 491, 494, 709, 712
PleI GAGTC 3 cut(s) 280, 365, 804
PpsI GAGTC 3 cut(s) 280, 365, 804
PpuMI RGGWCCY 1 cut(s) 612
Psp124BI GAGCTC 2 cut(s) 393, 566
Psp5II RGGWCCY 1 cut(s) 612
Psp6I CCWGG 4 cut(s) 399, 426, 732, 737
PspFI CCCAGC 1 cut(s) 118
PspGI CCWGG 4 cut(s) 399, 426, 732, 737
PspN4I GGNNCC 2 cut(s) 613, 614
PspPI GGNCC 7 cut(s) 160, 421, 430, 487, 499, 612, 730
PspPPI RGGWCCY 1 cut(s) 612
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 2 cut(s) 702, 747
RsaNI GTAC 2 cut(s) 701, 746
SacI GAGCTC 2 cut(s) 393, 566
SacII CCGCGG 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 2 cut(s) 363, 663
SatI GCNGC 6 cut(s) 123, 314, 490, 493, 708, 711
Sau96I GGNCC 7 cut(s) 160, 421, 430, 487, 499, 612, 730
ScaI AGTACT 1 cut(s) 747
SchI GAGTC 3 cut(s) 280, 365, 805
ScrFI CCNGG 5 cut(s) 401, 428, 617, 734, 739
SduI GDGCHC 3 cut(s) 108, 393, 566
SfcI CTRYAG 1 cut(s) 346
SfiI GGCCNNNNNGGCC 1 cut(s) 410
Sfr303I CCGCGG 1 cut(s) 711
SgrBI CCGCGG 1 cut(s) 711
SinI GGWCC 3 cut(s) 160, 421, 612
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 2 cut(s) 517, 772
SseBI AGGCCT 1 cut(s) 413
SspMI CTAG 2 cut(s) 131, 267
SstI GAGCTC 2 cut(s) 393, 566
StuI AGGCCT 1 cut(s) 413
StyD4I CCNGG 5 cut(s) 399, 426, 615, 732, 737
TaaI ACNGT 2 cut(s) 145, 437
TaiI ACGT 3 cut(s) 600, 690, 759
TaqI TCGA 3 cut(s) 324, 339, 417
TasI AATT 2 cut(s) 517, 772
TatI WGTACW 1 cut(s) 745
TauI GCSGC 5 cut(s) 316, 492, 495, 710, 713
TfiI GAWTC 2 cut(s) 239, 787
Tru1I TTAA 2 cut(s) 363, 663
Tru9I TTAA 2 cut(s) 363, 663
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 3 cut(s) 17, 212, 546
TspGWI ACGGA 2 cut(s) 91, 683
VpaK11BI GGWCC 3 cut(s) 160, 421, 612
XspI CTAG 2 cut(s) 131, 267
ZraI GACGTC 1 cut(s) 598
ZrmI AGTACT 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.