Rh4CG316200

Pleiotropic regulatory locus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0013315
Physical Location & Seq
Forward (+)
57900307 .. 57904373
4067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG316200.1

Sequence Viewer

Length: 1245 bp
ATGAAAACTGCACCCTCTTTTTCTTTCTCAGATACCACCCAAGACTCCAAGAAGAAATCTATGAGGAAATCTAGTAGTAAAGCCGGCAGGACTCAGAGCCAGAGCAACAACCACCAGCCGCCGATGTTCGATTGCGAGTGCTTCGACTGCTACAGAAGCTACTGGTTTAAGTGGGACTCCTCCCCCAACCGCGAGCTCATCCACCAGGCCATTGAGGCCTTCGAGGACCACCTGGCCCACGGTGAGAAGCCCAAGAAGAACGCCGGCAGGGGGAAGCGAAGAGACAAGATGGGCCGCCGCGAGGCCCAAAAATCAGCCGATAATTCCTCCAAAGATGAAGTCTTTGTGGCGGAGGAGAATGTAGGGAGCTCAGTTGCCGAGGTGGTGTTGCCTCTGTGCGACGTCGTTTCGGTGGGGTCCCCGGAGAAAGTTGAGGAGTTGGAAGTGGAAGAGCAAGCTGTGGAGGTTAAGACGGAGACGACGGCGGACGACGTGGCGTTGGTTGTACGCGCCGCGGCGAATAAGGTCATTCGTTCATATCATGGTCATCTAAGTGGTGTTTACTGCTTGGCAACTCATCCCACTCTTGATATTCTACTCACAGGGGGACGTGATTCAGTATGCCGGGTTTGGGATATTCGTACCCAAACGCATGTTCATGCATTCTTGGGGCACGACAGCACAGTTTGCTCGGTTTTCACTAGACCAATCGATCCCCAAGTTGTCACTGGCTCTCACGACGCAACCATCAAGTTCTGGGACCTTAGAGGTGGAAAAGCAATGTCAACTCTCACACACCATAAGAAATCCGTGCGTGCAATGGCGCCACATCCTAAGGATCAGCATTGTTTTACTTCTGTGTCAGTAGACAACATTAAGAAGTTCGGATCGTTCAACCTTCCGAGAGGGGAATTTTTACACGATATGCTAGCTCAGCAGAACACCATAGTTAACACAATGGCGGTCAATGGTGATGGAGTTATGGCCACCGGAGATGACAGTGGGAGTTTGTGGTTTTGGGATTGGGAGAGTGGCCATAATTATCAGCAATCCCAAACAACTGTACAGCCATGTTCTCTGAATAGTGAAGCTGGTATTTCTGCCCTTTCTTATGATGTCACTGGCAGAAGGCTAGTTACTTGTGGAGTTGACAAGACGATCAAAATGTGGAAACAAGACAAAAACGCCACACCAGAAACTCATCCTCTCAATTTCAGTCCGCCTAAAGATATCCGGCACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009870 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0010204 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031461 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034284 GO:0034641 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071011 GO:0071013 GO:0071310 GO:0071322 GO:0071495 GO:0071704 GO:0080008 GO:0080090 GO:0080134 GO:0090304 GO:0098542 GO:0099402 GO:1901360 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WD40

Protein Analysis

414

Amino Acids

46.09

Weight (kDa)

6.83

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 142 - 292 3.3e-21 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 146 - 237 1.2e-07 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 161 - 344 1.3e-21 WDR5 beta-propeller domain
WDR55 PF24796 161 - 259 8.7e-07 WDR55
Beta-prop_THOC3 PF25174 163 - 232 8.9e-09 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 167 - 284 2.6e-16 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 167 - 290 8.1e-13 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st PF25171 173 - 291 5.2e-09 WDR36/Utp21 first beta-propeller
WD40 PF00400 175 - 212 3.1e-08 WD domain, G-beta repeat
Beta-prop_EML PF23409 178 - 399 5.6e-16 Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19 PF24814 185 - 390 8.9e-25 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 185 - 353 2.2e-11 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 195 - 298 2.4e-08 WDR3 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 197 - 298 8.8e-09 WDR90/POC16, second beta-propeller
Beta-prop_TEP1_2nd PF25047 197 - 275 2.1e-11 TEP-1 second beta-propeller
Beta-prop_WDR75_1st PF23869 204 - 300 7.4e-06 WD repeat-containing protein 75 first beta-propeller
EIF3I PF24805 221 - 392 1.1e-06 EIF3I
Beta-prop_THOC3 PF25174 241 - 354 1.6e-08 THOC3 beta-propeller domain
WDR55 PF24796 260 - 394 5.4e-08 WDR55
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13090
fragaria_vesca FvH4_4g23440
malus_domestica MD05G1113800.v1.1 MD13G1122500.v1.1 MD16G1123000.v1.1
prunus_persica Prupe.1G222700_v2.0.a1 Prupe.6G184300_v2.0.a1
pyrus_communis pycom13g10660
rosa_chinensis RchiOBHm_Chr4g0429791
rosa_laevigata RLG00000007042
rosa_multiflora Rmu_co8022056.1_g000001 Rmu_sc0018457.1_g000001
rosa_roxburghii Rroxscaffold_5G00371570
rosa_rugosa Rorug04G0238400
rosa_samantha Rh4BG300700 Rh4CG316200 Rh4DG297800
rosa_wichuraiana Rw4G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 405
AccB1I GGYRCC 2 cut(s) 823, 1236
AccI GTMKAC 1 cut(s) 867
AccII CGCG 4 cut(s) 192, 300, 510, 515
AclWI GGATC 3 cut(s) 707, 846, 895
AcoI YGGCCR 2 cut(s) 984, 1033
AcsI RAATTY 1 cut(s) 911
AcyI GRCGYC 2 cut(s) 402, 824
AfaI GTAC 3 cut(s) 507, 643, 1065
AfiI CCNNNNNNNGG 3 cut(s) 270, 301, 631
AgsI TTSAA 1 cut(s) 895
AjiI CACGTC 2 cut(s) 493, 611
AjnI CCWGG 2 cut(s) 204, 231
AjuI GAANNNNNNNTTGG 2 cut(s) 639, 671
AluBI AGCT 6 cut(s) 159, 196, 369, 458, 932, 1091
AluI AGCT 6 cut(s) 159, 196, 369, 458, 932, 1091
Alw21I GWGCWC 2 cut(s) 198, 371
Alw26I GTCTC 2 cut(s) 276, 470
AlwI GGATC 3 cut(s) 707, 846, 895
AoxI GGCC 7 cut(s) 207, 216, 234, 292, 303, 984, 1033
ApoI RAATTY 1 cut(s) 911
ArsI GACNNNNNNTTYG 2 cut(s) 324, 356
AspLEI GCGC 2 cut(s) 512, 826
AspS9I GGNCC 6 cut(s) 226, 235, 292, 304, 417, 760
AsuC2I CCSGG 2 cut(s) 422, 626
AsuHPI GGTGA 2 cut(s) 254, 983
AsuNHI GCTAGC 1 cut(s) 928
AvaII GGWCC 3 cut(s) 226, 417, 760
AxyI CCTNAGG 1 cut(s) 834
BaeGI GKGCMC 1 cut(s) 675
BalI TGGCCA 2 cut(s) 986, 1035
BanI GGYRCC 2 cut(s) 823, 1236
BanII GRGCYC 2 cut(s) 198, 371
BarI GAAGNNNNNNTAC 2 cut(s) 1120, 1152
Bbv12I GWGCWC 2 cut(s) 198, 371
BccI CCATC 3 cut(s) 283, 755, 968
BceAI ACGGC 1 cut(s) 498
BciT130I CCWGG 2 cut(s) 206, 233
BcnI CCSGG 2 cut(s) 422, 626
BcoDI GTCTC 2 cut(s) 276, 470
BfaI CTAG 5 cut(s) 72, 702, 929, 1133, 1243
BfmI CTRYAG 1 cut(s) 151
BfoI RGCGCY 1 cut(s) 827
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 5 cut(s) 119, 295, 298, 513, 516
BlpI GCTNAGC 1 cut(s) 933
BlsI GCNGC 5 cut(s) 120, 296, 299, 514, 517
Bme1390I CCNGG 4 cut(s) 206, 233, 422, 626
Bme18I GGWCC 3 cut(s) 226, 417, 760
BmgBI CACGTC 2 cut(s) 493, 611
BmgT120I GGNCC 6 cut(s) 226, 235, 292, 304, 417, 760
BmiI GGNNCC 5 cut(s) 418, 419, 761, 825, 1238
BmrFI CCNGG 4 cut(s) 206, 233, 422, 626
BmtI GCTAGC 1 cut(s) 932
Bpu1102I GCTNAGC 1 cut(s) 933
BpuMI CCSGG 2 cut(s) 422, 626
Bsa29I ATCGAT 1 cut(s) 711
BsaHI GRCGYC 2 cut(s) 402, 824
BsaJI CCNNGG 4 cut(s) 238, 378, 420, 513
BsaWI WCCGGW 1 cut(s) 989
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 301, 631
Bse118I RCCGGY 2 cut(s) 83, 263
Bse1I ACTGG 3 cut(s) 167, 733, 1126
Bse21I CCTNAGG 1 cut(s) 834
Bse3DI GCAATG 2 cut(s) 786, 825
BseBI CCWGG 2 cut(s) 206, 233
BseCI ATCGAT 1 cut(s) 711
BseDI CCNNGG 4 cut(s) 238, 378, 420, 513
BseGI GGATG 4 cut(s) 198, 577, 829, 1201
BseLI CCNNNNNNNGG 3 cut(s) 270, 301, 631
BseMI GCAATG 2 cut(s) 786, 825
BseMII CTCAG 4 cut(s) 42, 107, 384, 947
BseNI ACTGG 3 cut(s) 167, 733, 1126
BseRI GAGGAG 3 cut(s) 169, 368, 449
BseSI GKGCMC 1 cut(s) 675
Bsh1236I CGCG 4 cut(s) 192, 300, 510, 515
BshFI GGCC 7 cut(s) 209, 218, 236, 294, 305, 986, 1035
BshNI GGYRCC 2 cut(s) 823, 1236
BshVI ATCGAT 1 cut(s) 711
BsiHKAI GWGCWC 2 cut(s) 198, 371
BsiSI CCGG 6 cut(s) 84, 264, 422, 625, 990, 1234
BslFI GGGAC 4 cut(s) 188, 403, 621, 773
BslI CCNNNNNNNGG 3 cut(s) 270, 301, 631
BsmAI GTCTC 2 cut(s) 276, 470
BsmBI CGTCTC 1 cut(s) 470
BsmFI GGGAC 4 cut(s) 188, 403, 621, 773
BsmI GAATGC 1 cut(s) 662
BsnI GGCC 7 cut(s) 209, 218, 236, 294, 305, 986, 1035
Bsp1286I GDGCHC 3 cut(s) 198, 371, 675
Bsp1407I TGTACA 1 cut(s) 1063
Bsp143I GATC 4 cut(s) 712, 838, 887, 1158
Bsp1720I GCTNAGC 1 cut(s) 933
BspANI GGCC 7 cut(s) 209, 218, 236, 294, 305, 986, 1035
BspCNI CTCAG 4 cut(s) 41, 106, 383, 946
BspDI ATCGAT 1 cut(s) 711
BspFNI CGCG 4 cut(s) 192, 300, 510, 515
BspLI GGNNCC 5 cut(s) 418, 419, 761, 825, 1238
BspOI GCTAGC 1 cut(s) 932
BspPI GGATC 3 cut(s) 707, 846, 895
BspQI GCTCTTC 1 cut(s) 444
BspT107I GGYRCC 2 cut(s) 823, 1236
BsrDI GCAATG 2 cut(s) 786, 825
BsrFI RCCGGY 2 cut(s) 83, 263
BsrGI TGTACA 1 cut(s) 1063
BsrI ACTGG 3 cut(s) 167, 733, 1126
BssAI RCCGGY 2 cut(s) 83, 263
BssECI CCNNGG 4 cut(s) 238, 378, 420, 513
BssMI GATC 4 cut(s) 712, 838, 887, 1158
BssNI GRCGYC 2 cut(s) 402, 824
Bst2UI CCWGG 2 cut(s) 206, 233
Bst4CI ACNGT 4 cut(s) 242, 685, 1001, 1063
Bst6I CTCTTC 2 cut(s) 274, 444
BstACI GRCGYC 2 cut(s) 402, 824
BstAPI GCANNNNNTGC 1 cut(s) 687
BstAUI TGTACA 1 cut(s) 1063
BstC8I GCNNGC 6 cut(s) 85, 194, 265, 456, 816, 930
BstDEI CTNAG 7 cut(s) 28, 93, 370, 551, 764, 834, 933
BstDSI CCRYGG 2 cut(s) 238, 513
BstF5I GGATG 4 cut(s) 198, 577, 829, 1201
BstFNI CGCG 4 cut(s) 192, 300, 510, 515
BstH2I RGCGCY 1 cut(s) 827
BstHHI GCGC 2 cut(s) 512, 826
BstKTI GATC 4 cut(s) 715, 841, 890, 1161
BstMAI GTCTC 2 cut(s) 276, 470
BstMBI GATC 4 cut(s) 712, 838, 887, 1158
BstMWI GCNNNNNNNGC 5 cut(s) 147, 156, 215, 687, 934
BstNI CCWGG 2 cut(s) 206, 233
BstNSI RCATGY 1 cut(s) 656
BstSCI CCNGG 4 cut(s) 204, 231, 420, 624
BstSFI CTRYAG 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 675
BstUI CGCG 4 cut(s) 192, 300, 510, 515
Bsu15I ATCGAT 1 cut(s) 711
Bsu36I CCTNAGG 1 cut(s) 834
BsuRI GGCC 7 cut(s) 209, 218, 236, 294, 305, 986, 1035
BsuTUI ATCGAT 1 cut(s) 711
BtgI CCRYGG 2 cut(s) 238, 513
BtrI CACGTC 2 cut(s) 493, 611
BtsCI GGATG 4 cut(s) 198, 577, 829, 1201
BtsIMutI CAGTG 3 cut(s) 726, 1006, 1119
Cac8I GCNNGC 6 cut(s) 85, 194, 265, 456, 816, 930
CfoI GCGC 2 cut(s) 512, 826
Cfr10I RCCGGY 2 cut(s) 83, 263
Cfr13I GGNCC 6 cut(s) 226, 235, 292, 304, 417, 760
Cfr42I CCGCGG 1 cut(s) 516
ClaI ATCGAT 1 cut(s) 711
CseI GACGC 1 cut(s) 749
Csp6I GTAC 3 cut(s) 506, 642, 1064
CviAII CATG 4 cut(s) 542, 653, 659, 1071
CviQI GTAC 3 cut(s) 506, 642, 1064
DdeI CTNAG 7 cut(s) 28, 93, 370, 551, 764, 834, 933
DinI GGCGCC 1 cut(s) 825
DpnI GATC 4 cut(s) 714, 840, 889, 1160
DpnII GATC 4 cut(s) 712, 838, 887, 1158
EaeI YGGCCR 2 cut(s) 984, 1033
Eam1104I CTCTTC 2 cut(s) 274, 444
EarI CTCTTC 2 cut(s) 274, 444
EciI GGCGGA 3 cut(s) 365, 500, 1209
Ecl136II GAGCTC 2 cut(s) 196, 369
Eco147I AGGCCT 1 cut(s) 218
Eco24I GRGCYC 2 cut(s) 198, 371
Eco32I GATATC 1 cut(s) 1231
Eco47I GGWCC 3 cut(s) 226, 417, 760
Eco53kI GAGCTC 2 cut(s) 196, 369
Eco81I CCTNAGG 1 cut(s) 834
EcoICRI GAGCTC 2 cut(s) 196, 369
EcoO109I RGGNCCY 2 cut(s) 417, 760
EcoRII CCWGG 2 cut(s) 204, 231
EcoRV GATATC 1 cut(s) 1231
EcoT22I ATGCAT 1 cut(s) 664
EcoT38I GRGCYC 2 cut(s) 198, 371
EgeI GGCGCC 1 cut(s) 825
EheI GGCGCC 1 cut(s) 825
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 4 cut(s) 545, 656, 662, 1074
FaqI GGGAC 4 cut(s) 188, 403, 621, 773
FatI CATG 4 cut(s) 541, 652, 658, 1070
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 5 cut(s) 119, 295, 298, 513, 516
FokI GGATG 4 cut(s) 185, 564, 816, 1188
FriOI GRGCYC 2 cut(s) 198, 371
Fsp4HI GCNGC 5 cut(s) 119, 295, 298, 513, 516
FspBI CTAG 5 cut(s) 72, 702, 929, 1133, 1243
GlaI GCGC 2 cut(s) 511, 825
GluI GCNGC 5 cut(s) 119, 295, 298, 513, 516
HaeII RGCGCY 1 cut(s) 827
HaeIII GGCC 7 cut(s) 209, 218, 236, 294, 305, 986, 1035
HapII CCGG 6 cut(s) 84, 264, 422, 625, 990, 1234
HgaI GACGC 1 cut(s) 749
HhaI GCGC 2 cut(s) 512, 826
Hin1I GRCGYC 2 cut(s) 402, 824
Hin1II CATG 4 cut(s) 545, 656, 662, 1074
Hin6I GCGC 2 cut(s) 510, 824
HinP1I GCGC 2 cut(s) 510, 824
HincII GTYRAC 3 cut(s) 786, 952, 1150
HindII GTYRAC 3 cut(s) 786, 952, 1150
HinfI GANTC 4 cut(s) 44, 91, 176, 614
HpaI GTTAAC 1 cut(s) 952
HpaII CCGG 6 cut(s) 84, 264, 422, 625, 990, 1234
HphI GGTGA 2 cut(s) 254, 983
Hpy166II GTNNAC 5 cut(s) 562, 786, 868, 952, 1150
Hpy188I TCNGA 5 cut(s) 31, 96, 887, 903, 1080
Hpy188III TCNNGA 2 cut(s) 587, 737
Hpy8I GTNNAC 5 cut(s) 562, 786, 868, 952, 1150
Hpy99I CGWCG 5 cut(s) 404, 407, 484, 494, 743
HpyAV CCTTC 3 cut(s) 229, 908, 1122
HpyCH4III ACNGT 4 cut(s) 242, 685, 1001, 1063
HpyCH4IV ACGT 3 cut(s) 402, 492, 610
HpyCH4V TGCA 3 cut(s) 11, 662, 818
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 156, 215, 687, 934
HpyF3I CTNAG 7 cut(s) 28, 93, 370, 551, 764, 834, 933
HpySE526I ACGT 3 cut(s) 402, 492, 610
Hsp92I GRCGYC 2 cut(s) 402, 824
Hsp92II CATG 4 cut(s) 545, 656, 662, 1074
HspAI GCGC 2 cut(s) 510, 824
KasI GGCGCC 1 cut(s) 823
KflI GGGWCCC 1 cut(s) 417
KroI GCCGGC 2 cut(s) 83, 263
KroNI GCCGGC 2 cut(s) 85, 265
KspAI GTTAAC 1 cut(s) 952
KspI CCGCGG 1 cut(s) 516
Kzo9I GATC 4 cut(s) 712, 838, 887, 1158
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 1 cut(s) 366
MaeI CTAG 5 cut(s) 72, 702, 929, 1133, 1243
MaeII ACGT 3 cut(s) 402, 492, 610
MaeIII GTNAC 3 cut(s) 724, 1117, 1135
MalI GATC 4 cut(s) 714, 840, 889, 1160
MboI GATC 4 cut(s) 712, 838, 887, 1158
MboII GAAGA 4 cut(s) 64, 268, 291, 461
MhlI GDGCHC 3 cut(s) 198, 371, 675
MlsI TGGCCA 2 cut(s) 986, 1035
MluCI AATT 4 cut(s) 322, 911, 1039, 1210
MluNI TGGCCA 2 cut(s) 986, 1035
Mly113I GGCGCC 1 cut(s) 824
MlyI GAGTC 3 cut(s) 38, 85, 170
MmeI TCCRAC 1 cut(s) 420
Mox20I TGGCCA 2 cut(s) 986, 1035
Mph1103I ATGCAT 1 cut(s) 664
MroNI GCCGGC 2 cut(s) 83, 263
MscI TGGCCA 2 cut(s) 986, 1035
MseI TTAA 4 cut(s) 168, 468, 876, 951
MslI CAYNNNNRTG 2 cut(s) 552, 657
Msp20I TGGCCA 2 cut(s) 986, 1035
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 6 cut(s) 84, 264, 422, 625, 990, 1234
MspR9I CCNGG 4 cut(s) 206, 233, 422, 626
Mva1269I GAATGC 1 cut(s) 662
MvaI CCWGG 2 cut(s) 206, 233
MvnI CGCG 4 cut(s) 192, 300, 510, 515
MwoI GCNNNNNNNGC 5 cut(s) 147, 156, 215, 687, 934
NaeI GCCGGC 2 cut(s) 85, 265
NarI GGCGCC 1 cut(s) 824
NciI CCSGG 2 cut(s) 422, 626
NdeII GATC 4 cut(s) 712, 838, 887, 1158
NgoMIV GCCGGC 2 cut(s) 83, 263
NheI GCTAGC 1 cut(s) 928
NlaIII CATG 4 cut(s) 545, 656, 662, 1074
NlaIV GGNNCC 5 cut(s) 418, 419, 761, 825, 1238
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 2 cut(s) 724, 1117
NsiI ATGCAT 1 cut(s) 664
NspI RCATGY 1 cut(s) 656
PceI AGGCCT 1 cut(s) 218
PciSI GCTCTTC 1 cut(s) 444
PctI GAATGC 1 cut(s) 662
PdiI GCCGGC 2 cut(s) 85, 265
PfeI GAWTC 1 cut(s) 614
PkrI GCNGC 5 cut(s) 120, 296, 299, 514, 517
PleI GAGTC 3 cut(s) 38, 85, 170
PluTI GGCGCC 1 cut(s) 827
PpsI GAGTC 3 cut(s) 38, 85, 170
PpuMI RGGWCCY 2 cut(s) 417, 760
Psp124BI GAGCTC 2 cut(s) 198, 371
Psp5II RGGWCCY 2 cut(s) 417, 760
Psp6I CCWGG 2 cut(s) 204, 231
PspGI CCWGG 2 cut(s) 204, 231
PspN4I GGNNCC 5 cut(s) 418, 419, 761, 825, 1238
PspPI GGNCC 6 cut(s) 226, 235, 292, 304, 417, 760
PspPPI RGGWCCY 2 cut(s) 417, 760
RsaI GTAC 3 cut(s) 507, 643, 1065
RsaNI GTAC 3 cut(s) 506, 642, 1064
RseI CAYNNNNRTG 2 cut(s) 552, 657
SacI GAGCTC 2 cut(s) 198, 371
SacII CCGCGG 1 cut(s) 516
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 4 cut(s) 168, 468, 876, 951
SatI GCNGC 5 cut(s) 119, 295, 298, 513, 516
Sau3AI GATC 4 cut(s) 712, 838, 887, 1158
Sau96I GGNCC 6 cut(s) 226, 235, 292, 304, 417, 760
SchI GAGTC 3 cut(s) 38, 85, 170
ScrFI CCNGG 4 cut(s) 206, 233, 422, 626
SduI GDGCHC 3 cut(s) 198, 371, 675
SfcI CTRYAG 1 cut(s) 151
SfiI GGCCNNNNNGGCC 1 cut(s) 215
SfoI GGCGCC 1 cut(s) 825
Sfr303I CCGCGG 1 cut(s) 516
SgrBI CCGCGG 1 cut(s) 516
SinI GGWCC 3 cut(s) 226, 417, 760
SmiMI CAYNNNNRTG 2 cut(s) 552, 657
Sse9I AATT 4 cut(s) 322, 911, 1039, 1210
SseBI AGGCCT 1 cut(s) 218
SspDI GGCGCC 1 cut(s) 823
SspMI CTAG 5 cut(s) 72, 702, 929, 1133, 1243
SstI GAGCTC 2 cut(s) 198, 371
StuI AGGCCT 1 cut(s) 218
StyD4I CCNGG 4 cut(s) 204, 231, 420, 624
TaaI ACNGT 4 cut(s) 242, 685, 1001, 1063
TaiI ACGT 3 cut(s) 405, 495, 613
TaqI TCGA 4 cut(s) 129, 144, 222, 711
TasI AATT 4 cut(s) 322, 911, 1039, 1210
TatI WGTACW 1 cut(s) 1063
TauI GCSGC 5 cut(s) 121, 297, 300, 515, 518
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 4 cut(s) 168, 468, 876, 951
Tru9I TTAA 4 cut(s) 168, 468, 876, 951
TscAI CASTG 3 cut(s) 733, 1006, 1126
TseFI GTSAC 2 cut(s) 724, 1117
Tsp45I GTSAC 2 cut(s) 724, 1117
TspDTI ATGAA 4 cut(s) 17, 351, 525, 647
TspGWI ACGGA 2 cut(s) 488, 799
TspRI CASTG 3 cut(s) 733, 1006, 1126
VpaK11BI GGWCC 3 cut(s) 226, 417, 760
XapI RAATTY 1 cut(s) 911
XceI RCATGY 1 cut(s) 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 725
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 5 cut(s) 72, 702, 929, 1133, 1243
ZraI GACGTC 1 cut(s) 403
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.