RLG00000007042

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013315
Physical Location & Seq
Reverse (-)
12975404 .. 12976962
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007042

Sequence Viewer

Length: 873 bp
ATGGTTGCTTCGGGAAGAAATGGAAGAGCTCTCACAAGCATAGAGCAGCAGCGAGCAAACCGCCACTCTCAGCCCATGAAGATAAAGAACAAAGGCAAAGTCCACCCATCTCCTTCCTCCTCCTCCTCCTCCTCCTCATCTTCCGATGGAGTTGTTATCTCCGTGCTGCAGCTACTCCCAGCTGCTATTCTAGCTCTGGCCACGGTTCTCTCCCTCGAGGACCGCGAAGTCTTGGCTTACATGATAACCCGTTCCATGAAAACCGCACCCTCTTCTTCTTCTTTCTCAAACACCACCCAAGATTCCAAGAAGAAATCTATGAGGAAATCTAGTAGTAAAGCAGGCAGGACTGAGAGCCAGAGTAACAACCACCAGCCGCCGATGTTCGATTGCGAGTGCTTCGACTGCTACAGAAGCTACTGGTTCAAGTGGGACTCCTCCCCCAACCGTGAGCTCATCCACCAGGCCATTGAGGCCTTCGAGGACCACCTGGCCCACGGCGAGAAGCCCAAGAAGAACGCCGGCAGGGGGAAGCGAAGAGACAAGATGGGCCGCCGCGAGGCCCAAAAATCTGCCGACAATTCCTCCAAAGATGAAGTCTTTGTGGCGGAGGAGAATGTAGTGAGCTCAGTTACCGAGGTGGTGTTGCCTCTGTGCGACGTCGTTTCGGTGGGGTCCCCGGAGAAAGTTGAGGAGTTGGAAGTGGAAGAGCAAGCTGTGGAGGTTAAGACGGAGACGACGGCGGACGACGTGGCGTTGGTTGTACGCGCCGCGGCGGTGAGCAACCACAAGGGCCTGGCCAGGAAAGTACTTCCGGACGTGTTGGGGCTATTCAATTCTCGTTTGTGGAATCTTTGGAGTCCGAATGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

31.87

Weight (kDa)

8.8

Isoelectric Point (pI)

64.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13090
fragaria_vesca FvH4_4g23440
malus_domestica MD05G1113800.v1.1 MD13G1122500.v1.1 MD16G1123000.v1.1
prunus_persica Prupe.1G222700_v2.0.a1 Prupe.6G184300_v2.0.a1
pyrus_communis pycom13g10660
rosa_chinensis RchiOBHm_Chr4g0429791
rosa_laevigata RLG00000007042
rosa_multiflora Rmu_co8022056.1_g000001 Rmu_sc0018457.1_g000001
rosa_roxburghii Rroxscaffold_5G00371570
rosa_rugosa Rorug04G0238400
rosa_samantha Rh4BG300700 Rh4CG316200 Rh4DG297800
rosa_wichuraiana Rw4G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AatII GACGTC 1 cut(s) 663
AbsI CCTCGAGG 1 cut(s) 215
AccII CGCG 4 cut(s) 225, 558, 768, 773
AccIII TCCGGA 1 cut(s) 814
AcoI YGGCCR 2 cut(s) 198, 798
AcyI GRCGYC 1 cut(s) 660
AfaI GTAC 2 cut(s) 765, 810
AfiI CCNNNNNNNGG 2 cut(s) 528, 559
AflIII ACRYGT 1 cut(s) 819
AgsI TTSAA 2 cut(s) 427, 835
AjiI CACGTC 2 cut(s) 751, 820
AjnI CCWGG 4 cut(s) 462, 489, 795, 800
AluBI AGCT 8 cut(s) 29, 172, 182, 194, 417, 454, 627, 716
AluI AGCT 8 cut(s) 29, 172, 182, 194, 417, 454, 627, 716
Alw21I GWGCWC 3 cut(s) 31, 456, 629
Alw26I GTCTC 2 cut(s) 534, 728
Ama87I CYCGRG 1 cut(s) 215
Aor13HI TCCGGA 1 cut(s) 814
AoxI GGCC 8 cut(s) 198, 465, 474, 492, 550, 561, 793, 798
ApeKI GCWGC 5 cut(s) 46, 49, 166, 169, 182
ArsI GACNNNNNNTTYG 4 cut(s) 84, 116, 582, 614
AspLEI GCGC 1 cut(s) 770
AspS9I GGNCC 7 cut(s) 220, 484, 493, 550, 562, 675, 793
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 790
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 3 cut(s) 220, 484, 675
BalI TGGCCA 2 cut(s) 200, 800
BanII GRGCYC 3 cut(s) 31, 456, 629
Bbv12I GWGCWC 3 cut(s) 31, 456, 629
BbvI GCAGC 5 cut(s) 58, 61, 153, 169, 181
BccI CCATC 3 cut(s) 115, 140, 541
BceAI ACGGC 2 cut(s) 514, 756
BciT130I CCWGG 4 cut(s) 464, 491, 797, 802
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 2 cut(s) 534, 728
BfaI CTAG 2 cut(s) 191, 330
BfmI CTRYAG 2 cut(s) 167, 409
BglI GCCNNNNNGGC 1 cut(s) 473
BmcAI AGTACT 1 cut(s) 810
Bme1390I CCNGG 5 cut(s) 464, 491, 680, 797, 802
Bme18I GGWCC 3 cut(s) 220, 484, 675
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 2 cut(s) 751, 820
BmgT120I GGNCC 7 cut(s) 220, 484, 493, 550, 562, 675, 793
BmiI GGNNCC 2 cut(s) 676, 677
BmrFI CCNGG 5 cut(s) 464, 491, 680, 797, 802
BpuMI CCSGG 1 cut(s) 680
BsaHI GRCGYC 1 cut(s) 660
BsaJI CCNNGG 5 cut(s) 201, 496, 636, 678, 771
BsaWI WCCGGW 1 cut(s) 814
BsaXI ACNNNNNCTCC 2 cut(s) 569, 599
Bsc4I CCNNNNNNNGG 2 cut(s) 528, 559
Bse118I RCCGGY 1 cut(s) 521
Bse1I ACTGG 1 cut(s) 425
BseAI TCCGGA 1 cut(s) 814
BseBI CCWGG 4 cut(s) 464, 491, 797, 802
BseDI CCNNGG 5 cut(s) 201, 496, 636, 678, 771
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 2 cut(s) 528, 559
BseMII CTCAG 3 cut(s) 83, 342, 642
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 9 cut(s) 109, 112, 115, 118, 121, 124, 427, 626, 707
BseXI GCAGC 5 cut(s) 58, 61, 153, 169, 181
BseYI CCCAGC 1 cut(s) 178
Bsh1236I CGCG 4 cut(s) 225, 558, 768, 773
BshFI GGCC 8 cut(s) 200, 467, 476, 494, 552, 563, 795, 800
BsiHKAI GWGCWC 3 cut(s) 31, 456, 629
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 3 cut(s) 522, 680, 815
BslFI GGGAC 2 cut(s) 446, 661
BslI CCNNNNNNNGG 2 cut(s) 528, 559
BsmAI GTCTC 2 cut(s) 534, 728
BsmBI CGTCTC 1 cut(s) 728
BsmFI GGGAC 2 cut(s) 446, 661
BsmI GAATGC 1 cut(s) 871
BsnI GGCC 8 cut(s) 200, 467, 476, 494, 552, 563, 795, 800
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 3 cut(s) 31, 456, 629
Bsp13I TCCGGA 1 cut(s) 814
BspANI GGCC 8 cut(s) 200, 467, 476, 494, 552, 563, 795, 800
BspCNI CTCAG 3 cut(s) 82, 343, 641
BspEI TCCGGA 1 cut(s) 814
BspFNI CGCG 4 cut(s) 225, 558, 768, 773
BspLI GGNNCC 2 cut(s) 676, 677
BspMAI CTGCAG 1 cut(s) 171
BspQI GCTCTTC 2 cut(s) 19, 702
BsrFI RCCGGY 1 cut(s) 521
BsrI ACTGG 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 521
BssECI CCNNGG 5 cut(s) 201, 496, 636, 678, 771
BssNI GRCGYC 1 cut(s) 660
Bst2UI CCWGG 4 cut(s) 464, 491, 797, 802
Bst4CI ACNGT 2 cut(s) 205, 449
Bst6I CTCTTC 4 cut(s) 19, 277, 532, 702
BstACI GRCGYC 1 cut(s) 660
BstC8I GCNNGC 4 cut(s) 54, 343, 523, 714
BstDEI CTNAG 3 cut(s) 69, 351, 628
BstDSI CCRYGG 3 cut(s) 201, 496, 771
BstF5I GGATG 1 cut(s) 456
BstFNI CGCG 4 cut(s) 225, 558, 768, 773
BstHHI GCGC 1 cut(s) 770
BstMAI GTCTC 2 cut(s) 534, 728
BstMWI GCNNNNNNNGC 4 cut(s) 191, 405, 414, 473
BstNI CCWGG 4 cut(s) 464, 491, 797, 802
BstSCI CCNGG 5 cut(s) 462, 489, 678, 795, 800
BstSFI CTRYAG 2 cut(s) 167, 409
BstUI CGCG 4 cut(s) 225, 558, 768, 773
BstV1I GCAGC 5 cut(s) 58, 61, 153, 169, 181
BsuRI GGCC 8 cut(s) 200, 467, 476, 494, 552, 563, 795, 800
BtgI CCRYGG 3 cut(s) 201, 496, 771
BtrI CACGTC 2 cut(s) 751, 820
BtsCI GGATG 1 cut(s) 456
Cac8I GCNNGC 4 cut(s) 54, 343, 523, 714
CfoI GCGC 1 cut(s) 770
Cfr10I RCCGGY 1 cut(s) 521
Cfr13I GGNCC 7 cut(s) 220, 484, 493, 550, 562, 675, 793
Cfr42I CCGCGG 1 cut(s) 774
Csp6I GTAC 2 cut(s) 764, 809
CviAII CATG 3 cut(s) 76, 241, 256
CviQI GTAC 2 cut(s) 764, 809
DdeI CTNAG 3 cut(s) 69, 351, 628
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 2 cut(s) 198, 798
Eam1104I CTCTTC 4 cut(s) 19, 277, 532, 702
EarI CTCTTC 4 cut(s) 19, 277, 532, 702
EciI GGCGGA 2 cut(s) 623, 758
Ecl136II GAGCTC 3 cut(s) 29, 454, 627
Eco147I AGGCCT 1 cut(s) 476
Eco24I GRGCYC 3 cut(s) 31, 456, 629
Eco47I GGWCC 3 cut(s) 220, 484, 675
Eco53kI GAGCTC 3 cut(s) 29, 454, 627
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 3 cut(s) 29, 454, 627
EcoO109I RGGNCCY 2 cut(s) 675, 793
EcoRII CCWGG 4 cut(s) 462, 489, 795, 800
EcoT38I GRGCYC 3 cut(s) 31, 456, 629
Esp3I CGTCTC 1 cut(s) 728
FaeI CATG 3 cut(s) 79, 244, 259
FaiI YATR 5 cut(s) 41, 77, 242, 257, 320
FaqI GGGAC 2 cut(s) 446, 661
FatI CATG 3 cut(s) 75, 240, 255
FokI GGATG 1 cut(s) 443
FriOI GRGCYC 3 cut(s) 31, 456, 629
FspBI CTAG 2 cut(s) 191, 330
GlaI GCGC 1 cut(s) 769
GsaI CCCAGC 1 cut(s) 182
HaeIII GGCC 8 cut(s) 200, 467, 476, 494, 552, 563, 795, 800
HapII CCGG 3 cut(s) 522, 680, 815
HhaI GCGC 1 cut(s) 770
Hin1I GRCGYC 1 cut(s) 660
Hin1II CATG 3 cut(s) 79, 244, 259
Hin6I GCGC 1 cut(s) 768
HinP1I GCGC 1 cut(s) 768
HinfI GANTC 4 cut(s) 302, 434, 850, 859
HpaII CCGG 3 cut(s) 522, 680, 815
HphI GGTGA 1 cut(s) 790
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 145, 864
Hpy188III TCNNGA 2 cut(s) 12, 815
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 4 cut(s) 662, 665, 742, 752
HpyAV CCTTC 2 cut(s) 123, 487
HpyCH4III ACNGT 2 cut(s) 205, 449
HpyCH4IV ACGT 3 cut(s) 660, 750, 819
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 405, 414, 473
HpyF3I CTNAG 3 cut(s) 69, 351, 628
HpySE526I ACGT 3 cut(s) 660, 750, 819
Hsp92I GRCGYC 1 cut(s) 660
Hsp92II CATG 3 cut(s) 79, 244, 259
HspAI GCGC 1 cut(s) 768
KflI GGGWCCC 1 cut(s) 675
Kpn2I TCCGGA 1 cut(s) 814
KroI GCCGGC 1 cut(s) 521
KroNI GCCGGC 1 cut(s) 523
KspI CCGCGG 1 cut(s) 774
LguI GCTCTTC 2 cut(s) 19, 702
Lsp1109I GCAGC 5 cut(s) 58, 61, 153, 169, 181
MaeI CTAG 2 cut(s) 191, 330
MaeII ACGT 3 cut(s) 660, 750, 819
MaeIII GTNAC 2 cut(s) 362, 631
MhlI GDGCHC 3 cut(s) 31, 456, 629
MlsI TGGCCA 2 cut(s) 200, 800
MluCI AATT 2 cut(s) 580, 835
MluNI TGGCCA 2 cut(s) 200, 800
MlyI GAGTC 2 cut(s) 428, 868
MmeI TCCRAC 1 cut(s) 678
Mox20I TGGCCA 2 cut(s) 200, 800
MroI TCCGGA 1 cut(s) 814
MroNI GCCGGC 1 cut(s) 521
MscI TGGCCA 2 cut(s) 200, 800
MseI TTAA 1 cut(s) 726
Msp20I TGGCCA 2 cut(s) 200, 800
MspA1I CMGCKG 2 cut(s) 182, 773
MspI CCGG 3 cut(s) 522, 680, 815
MspR9I CCNGG 5 cut(s) 464, 491, 680, 797, 802
Mva1269I GAATGC 1 cut(s) 871
MvaI CCWGG 4 cut(s) 464, 491, 797, 802
MvnI CGCG 4 cut(s) 225, 558, 768, 773
MwoI GCNNNNNNNGC 4 cut(s) 191, 405, 414, 473
NaeI GCCGGC 1 cut(s) 523
NciI CCSGG 1 cut(s) 680
NgoMIV GCCGGC 1 cut(s) 521
NlaIII CATG 3 cut(s) 79, 244, 259
NlaIV GGNNCC 2 cut(s) 676, 677
PaeR7I CTCGAG 1 cut(s) 215
PceI AGGCCT 1 cut(s) 476
PciSI GCTCTTC 2 cut(s) 19, 702
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 871
PdiI GCCGGC 1 cut(s) 523
PfeI GAWTC 2 cut(s) 302, 850
PleI GAGTC 2 cut(s) 428, 867
PpsI GAGTC 2 cut(s) 428, 867
PpuMI RGGWCCY 1 cut(s) 675
Psp124BI GAGCTC 3 cut(s) 31, 456, 629
Psp5II RGGWCCY 1 cut(s) 675
Psp6I CCWGG 4 cut(s) 462, 489, 795, 800
PspFI CCCAGC 1 cut(s) 178
PspGI CCWGG 4 cut(s) 462, 489, 795, 800
PspN4I GGNNCC 2 cut(s) 676, 677
PspPI GGNCC 7 cut(s) 220, 484, 493, 550, 562, 675, 793
PspPPI RGGWCCY 1 cut(s) 675
PspXI VCTCGAGB 1 cut(s) 215
PstI CTGCAG 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 2 cut(s) 765, 810
RsaNI GTAC 2 cut(s) 764, 809
SacI GAGCTC 3 cut(s) 31, 456, 629
SacII CCGCGG 1 cut(s) 774
SapI GCTCTTC 2 cut(s) 19, 702
SaqAI TTAA 1 cut(s) 726
Sau96I GGNCC 7 cut(s) 220, 484, 493, 550, 562, 675, 793
ScaI AGTACT 1 cut(s) 810
SchI GAGTC 2 cut(s) 428, 868
ScrFI CCNGG 5 cut(s) 464, 491, 680, 797, 802
SduI GDGCHC 3 cut(s) 31, 456, 629
SfcI CTRYAG 2 cut(s) 167, 409
SfiI GGCCNNNNNGGCC 1 cut(s) 473
Sfr274I CTCGAG 1 cut(s) 215
Sfr303I CCGCGG 1 cut(s) 774
SgrBI CCGCGG 1 cut(s) 774
SinI GGWCC 3 cut(s) 220, 484, 675
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 2 cut(s) 580, 835
SseBI AGGCCT 1 cut(s) 476
SspMI CTAG 2 cut(s) 191, 330
SstI GAGCTC 3 cut(s) 31, 456, 629
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 5 cut(s) 462, 489, 678, 795, 800
TaaI ACNGT 2 cut(s) 205, 449
TaiI ACGT 3 cut(s) 663, 753, 822
TaqI TCGA 4 cut(s) 216, 387, 402, 480
TasI AATT 2 cut(s) 580, 835
TatI WGTACW 1 cut(s) 808
TauI GCSGC 5 cut(s) 379, 555, 558, 773, 776
TfiI GAWTC 2 cut(s) 302, 850
Tru1I TTAA 1 cut(s) 726
Tru9I TTAA 1 cut(s) 726
TseI GCWGC 5 cut(s) 46, 49, 166, 169, 182
TspDTI ATGAA 3 cut(s) 92, 272, 609
TspGWI ACGGA 2 cut(s) 151, 746
VpaK11BI GGWCC 3 cut(s) 220, 484, 675
XhoI CTCGAG 1 cut(s) 215
XspI CTAG 2 cut(s) 191, 330
ZraI GACGTC 1 cut(s) 661
ZrmI AGTACT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.