Rmu_co8022056.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8022056.1
OG0013315
Physical Location & Seq
Forward (+)
1 .. 529
529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8022056.1_g000001.1.cds

Sequence Viewer

Length: 529 bp
caggactcagagccagagcaacaaccaccagccgccgatgttcgattgcgagtgcttcgactgctacagaagctactggtttaagtgggactcctcccccaaccgcgagctcatccaccaggccattgaggccttcgaggaccacctggcctacggtgagaagcccaagaagaacgccggcagggggaagcgaagagacaagatgggccgccgcgaggcccaaaaatcagccgataattcctccaaagatgaagtctttgtggcggaggagaatgtagggagctcagttgccgaggtggtgttgcctctgtgcgacgtcgtttcggtggggtccccggagaaagttgaggagttggaagtggaagagcaagctgtggaggttaagacggagacgacggcggacgacgtggcgttggttgtacgcgccgcggcggtgagcaaccacaagggcctggccaggaaagtacttccggacgtgttggggctattcaattctcgtttgtggaatctttggagtccgaatgcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.66

Weight (kDa)

5.32

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13090
fragaria_vesca FvH4_4g23440
malus_domestica MD05G1113800.v1.1 MD13G1122500.v1.1 MD16G1123000.v1.1
prunus_persica Prupe.1G222700_v2.0.a1 Prupe.6G184300_v2.0.a1
pyrus_communis pycom13g10660
rosa_chinensis RchiOBHm_Chr4g0429791
rosa_laevigata RLG00000007042
rosa_multiflora Rmu_co8022056.1_g000001 Rmu_sc0018457.1_g000001
rosa_roxburghii Rroxscaffold_5G00371570
rosa_rugosa Rorug04G0238400
rosa_samantha Rh4BG300700 Rh4CG316200 Rh4DG297800
rosa_wichuraiana Rw4G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 319
AccII CGCG 4 cut(s) 106, 214, 424, 429
AccIII TCCGGA 1 cut(s) 470
AciI CCGC 9 cut(s) 33, 104, 209, 212, 264, 399, 427, 429, 432
AcoI YGGCCR 1 cut(s) 454
AcyI GRCGYC 1 cut(s) 316
AfaI GTAC 2 cut(s) 421, 466
AfiI CCNNNNNNNGG 2 cut(s) 184, 215
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 1 cut(s) 491
AjiI CACGTC 2 cut(s) 407, 476
AjnI CCWGG 4 cut(s) 118, 145, 451, 456
AluBI AGCT 4 cut(s) 73, 110, 283, 372
AluI AGCT 4 cut(s) 73, 110, 283, 372
Alw21I GWGCWC 2 cut(s) 112, 285
Alw26I GTCTC 2 cut(s) 190, 384
Aor13HI TCCGGA 1 cut(s) 470
AoxI GGCC 7 cut(s) 121, 130, 148, 206, 217, 449, 454
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 5 cut(s) 140, 206, 218, 331, 449
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 168, 446
AvaII GGWCC 2 cut(s) 140, 331
BalI TGGCCA 1 cut(s) 456
BanII GRGCYC 2 cut(s) 112, 285
Bbv12I GWGCWC 2 cut(s) 112, 285
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 412
BciT130I CCWGG 4 cut(s) 120, 147, 453, 458
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 190, 384
BfmI CTRYAG 1 cut(s) 65
BglI GCCNNNNNGGC 1 cut(s) 129
BisI GCNGC 5 cut(s) 33, 209, 212, 427, 430
BlsI GCNGC 5 cut(s) 34, 210, 213, 428, 431
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 5 cut(s) 120, 147, 336, 453, 458
Bme18I GGWCC 2 cut(s) 140, 331
BmgBI CACGTC 2 cut(s) 407, 476
BmgT120I GGNCC 5 cut(s) 140, 206, 218, 331, 449
BmiI GGNNCC 2 cut(s) 332, 333
BmrFI CCNGG 5 cut(s) 120, 147, 336, 453, 458
BpuMI CCSGG 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 316
BsaJI CCNNGG 3 cut(s) 292, 334, 427
BsaWI WCCGGW 1 cut(s) 470
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 215
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 81
BseAI TCCGGA 1 cut(s) 470
BseBI CCWGG 4 cut(s) 120, 147, 453, 458
BseDI CCNNGG 3 cut(s) 292, 334, 427
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 2 cut(s) 184, 215
BseMII CTCAG 2 cut(s) 21, 298
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 3 cut(s) 83, 282, 363
Bsh1236I CGCG 4 cut(s) 106, 214, 424, 429
BshFI GGCC 7 cut(s) 123, 132, 150, 208, 219, 451, 456
BsiHKAI GWGCWC 2 cut(s) 112, 285
BsiSI CCGG 3 cut(s) 178, 336, 471
BslFI GGGAC 2 cut(s) 102, 317
BslI CCNNNNNNNGG 2 cut(s) 184, 215
BsmAI GTCTC 2 cut(s) 190, 384
BsmBI CGTCTC 1 cut(s) 384
BsmFI GGGAC 2 cut(s) 102, 317
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 7 cut(s) 123, 132, 150, 208, 219, 451, 456
Bsp1286I GDGCHC 2 cut(s) 112, 285
Bsp13I TCCGGA 1 cut(s) 470
BspACI CCGC 9 cut(s) 33, 104, 209, 212, 264, 399, 427, 429, 432
BspANI GGCC 7 cut(s) 123, 132, 150, 208, 219, 451, 456
BspCNI CTCAG 2 cut(s) 20, 297
BspEI TCCGGA 1 cut(s) 470
BspFNI CGCG 4 cut(s) 106, 214, 424, 429
BspLI GGNNCC 2 cut(s) 332, 333
BspQI GCTCTTC 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 177
BsrI ACTGG 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 3 cut(s) 292, 334, 427
BssNI GRCGYC 1 cut(s) 316
Bst2UI CCWGG 4 cut(s) 120, 147, 453, 458
Bst4CI ACNGT 1 cut(s) 156
Bst6I CTCTTC 2 cut(s) 188, 358
BstACI GRCGYC 1 cut(s) 316
BstC8I GCNNGC 3 cut(s) 108, 179, 370
BstDEI CTNAG 2 cut(s) 7, 284
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 4 cut(s) 106, 214, 424, 429
BstHHI GCGC 1 cut(s) 426
BstMAI GTCTC 2 cut(s) 190, 384
BstMWI GCNNNNNNNGC 3 cut(s) 61, 70, 129
BstNI CCWGG 4 cut(s) 120, 147, 453, 458
BstSCI CCNGG 5 cut(s) 118, 145, 334, 451, 456
BstSFI CTRYAG 1 cut(s) 65
BstUI CGCG 4 cut(s) 106, 214, 424, 429
BsuRI GGCC 7 cut(s) 123, 132, 150, 208, 219, 451, 456
BtgI CCRYGG 1 cut(s) 427
BtrI CACGTC 2 cut(s) 407, 476
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 108, 179, 370
CfoI GCGC 1 cut(s) 426
Cfr10I RCCGGY 1 cut(s) 177
Cfr13I GGNCC 5 cut(s) 140, 206, 218, 331, 449
Cfr42I CCGCGG 1 cut(s) 430
Csp6I GTAC 2 cut(s) 420, 465
CviQI GTAC 2 cut(s) 420, 465
DdeI CTNAG 2 cut(s) 7, 284
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 2 cut(s) 188, 358
EarI CTCTTC 2 cut(s) 188, 358
EciI GGCGGA 2 cut(s) 279, 414
Ecl136II GAGCTC 2 cut(s) 110, 283
Eco147I AGGCCT 1 cut(s) 132
Eco24I GRGCYC 2 cut(s) 112, 285
Eco47I GGWCC 2 cut(s) 140, 331
Eco53kI GAGCTC 2 cut(s) 110, 283
EcoICRI GAGCTC 2 cut(s) 110, 283
EcoO109I RGGNCCY 2 cut(s) 331, 449
EcoRII CCWGG 4 cut(s) 118, 145, 451, 456
EcoT38I GRGCYC 2 cut(s) 112, 285
Esp3I CGTCTC 1 cut(s) 384
FaqI GGGAC 2 cut(s) 102, 317
Fnu4HI GCNGC 5 cut(s) 33, 209, 212, 427, 430
FokI GGATG 1 cut(s) 99
FriOI GRGCYC 2 cut(s) 112, 285
Fsp4HI GCNGC 5 cut(s) 33, 209, 212, 427, 430
GlaI GCGC 1 cut(s) 425
GluI GCNGC 5 cut(s) 33, 209, 212, 427, 430
HaeIII GGCC 7 cut(s) 123, 132, 150, 208, 219, 451, 456
HapII CCGG 3 cut(s) 178, 336, 471
HhaI GCGC 1 cut(s) 426
Hin1I GRCGYC 1 cut(s) 316
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 4 cut(s) 5, 90, 506, 515
HpaII CCGG 3 cut(s) 178, 336, 471
HphI GGTGA 2 cut(s) 168, 446
Hpy188I TCNGA 2 cut(s) 10, 520
Hpy188III TCNNGA 1 cut(s) 471
Hpy99I CGWCG 4 cut(s) 318, 321, 398, 408
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 3 cut(s) 316, 406, 475
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 70, 129
HpyF3I CTNAG 2 cut(s) 7, 284
HpySE526I ACGT 3 cut(s) 316, 406, 475
Hsp92I GRCGYC 1 cut(s) 316
HspAI GCGC 1 cut(s) 424
KflI GGGWCCC 1 cut(s) 331
Kpn2I TCCGGA 1 cut(s) 470
KroI GCCGGC 1 cut(s) 177
KroNI GCCGGC 1 cut(s) 179
KspI CCGCGG 1 cut(s) 430
LguI GCTCTTC 1 cut(s) 358
LmnI GCTCC 1 cut(s) 280
MaeII ACGT 3 cut(s) 316, 406, 475
MboII GAAGA 3 cut(s) 182, 205, 375
MhlI GDGCHC 2 cut(s) 112, 285
MlsI TGGCCA 1 cut(s) 456
MluCI AATT 2 cut(s) 236, 491
MluNI TGGCCA 1 cut(s) 456
MlyI GAGTC 2 cut(s) 84, 524
MmeI TCCRAC 1 cut(s) 334
Mox20I TGGCCA 1 cut(s) 456
MroI TCCGGA 1 cut(s) 470
MroNI GCCGGC 1 cut(s) 177
MscI TGGCCA 1 cut(s) 456
MseI TTAA 2 cut(s) 82, 382
Msp20I TGGCCA 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 3 cut(s) 178, 336, 471
MspR9I CCNGG 5 cut(s) 120, 147, 336, 453, 458
Mva1269I GAATGC 1 cut(s) 527
MvaI CCWGG 4 cut(s) 120, 147, 453, 458
MvnI CGCG 4 cut(s) 106, 214, 424, 429
MwoI GCNNNNNNNGC 3 cut(s) 61, 70, 129
NaeI GCCGGC 1 cut(s) 179
NciI CCSGG 1 cut(s) 336
NgoMIV GCCGGC 1 cut(s) 177
NlaIV GGNNCC 2 cut(s) 332, 333
NmeAIII GCCGAG 1 cut(s) 317
PceI AGGCCT 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 358
PctI GAATGC 1 cut(s) 527
PdiI GCCGGC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 5 cut(s) 34, 210, 213, 428, 431
PleI GAGTC 2 cut(s) 84, 523
PpsI GAGTC 2 cut(s) 84, 523
PpuMI RGGWCCY 1 cut(s) 331
Psp124BI GAGCTC 2 cut(s) 112, 285
Psp5II RGGWCCY 1 cut(s) 331
Psp6I CCWGG 4 cut(s) 118, 145, 451, 456
PspGI CCWGG 4 cut(s) 118, 145, 451, 456
PspN4I GGNNCC 2 cut(s) 332, 333
PspPI GGNCC 5 cut(s) 140, 206, 218, 331, 449
PspPPI RGGWCCY 1 cut(s) 331
RsaI GTAC 2 cut(s) 421, 466
RsaNI GTAC 2 cut(s) 420, 465
SacI GAGCTC 2 cut(s) 112, 285
SacII CCGCGG 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 358
SaqAI TTAA 2 cut(s) 82, 382
SatI GCNGC 5 cut(s) 33, 209, 212, 427, 430
Sau96I GGNCC 5 cut(s) 140, 206, 218, 331, 449
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 2 cut(s) 84, 524
ScrFI CCNGG 5 cut(s) 120, 147, 336, 453, 458
SduI GDGCHC 2 cut(s) 112, 285
SfcI CTRYAG 1 cut(s) 65
SfiI GGCCNNNNNGGCC 1 cut(s) 129
Sfr303I CCGCGG 1 cut(s) 430
SgrBI CCGCGG 1 cut(s) 430
SinI GGWCC 2 cut(s) 140, 331
Sse9I AATT 2 cut(s) 236, 491
SseBI AGGCCT 1 cut(s) 132
SsiI CCGC 9 cut(s) 33, 104, 209, 212, 264, 399, 427, 429, 432
SstI GAGCTC 2 cut(s) 112, 285
StuI AGGCCT 1 cut(s) 132
StyD4I CCNGG 5 cut(s) 118, 145, 334, 451, 456
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 3 cut(s) 319, 409, 478
TaqI TCGA 3 cut(s) 43, 58, 136
TasI AATT 2 cut(s) 236, 491
TatI WGTACW 1 cut(s) 464
TauI GCSGC 5 cut(s) 35, 211, 214, 429, 432
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 2 cut(s) 82, 382
Tru9I TTAA 2 cut(s) 82, 382
TspDTI ATGAA 1 cut(s) 265
TspGWI ACGGA 1 cut(s) 402
VpaK11BI GGWCC 2 cut(s) 140, 331
ZraI GACGTC 1 cut(s) 317
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.