Prupe.6G184300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013315
Physical Location & Seq
Forward (+)
19253273 .. 19255066
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G184300.1

Sequence Viewer

Length: 789 bp
ATGAATGTAAAGAACAAAGGCAAAGTGCACCCATCTCCTTCTTCTCCCTCCTCCTCCATGAAATATGTTTATACTTTACATGGGTTGTATAAATTTGATAATTTGTCTCCTCTCCCAGCTGCCATTTTAACCCTGGCCTCGGTCCTCTCCCTCGAGGACCGCGAGGTCTTGGCTTACTTGATAACCCGGTCCATGAAAACCACCCCCAATATTTCTTCGATCTCGGCCCAAGACCCCAAGAAGAAATCTTCCAAGAAAGGCCCCAAGTCCACCAGCACCAGCACCCACCAGCCCCAAATGTTCGATTGCGACTGCTTCGACTGCTACAGAAGCTACTGGTTCAAATGGGACTCTTCCCCCAACCGCGAGCCCATCCACCAAGCCATCGAAGCCTCCGAAGATCACCTGGCCAACGGCGAGAAGACCAAGAAGAACAGCGACAGAGATTTTATCTTTCTGGAAGAGAACGCTCAAGTTTCACATGAGCTTGCCGTTGAAAGCTCTGCTTCTGCTCTGTTGCCAGAAAACGACGTGGTTTTGGTGGGTTCCAATGAGAAAGCAGATGGGGTTGAAGAAAATGACGGGAAAGTGGAAGACTTGGGCGAGGAGACACATGCAGAGCTTGTGTTGGCATATGTAGCACTACATAACTTTCTTCACAAAGAGTGTTGTTCTGATGAATTTCCAATTGAACCAACGAACGAATCTTCATCTTCTTCATCTGCAGTATTACCATTTAATGAAGATGATACTTTTGAACCTATTGTTCAAACCCAAGAACAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

29.1

Weight (kDa)

4.84

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13090
fragaria_vesca FvH4_4g23440
malus_domestica MD05G1113800.v1.1 MD13G1122500.v1.1 MD16G1123000.v1.1
prunus_persica Prupe.1G222700_v2.0.a1 Prupe.6G184300_v2.0.a1
pyrus_communis pycom13g10660
rosa_chinensis RchiOBHm_Chr4g0429791
rosa_laevigata RLG00000007042
rosa_multiflora Rmu_co8022056.1_g000001 Rmu_sc0018457.1_g000001
rosa_roxburghii Rroxscaffold_5G00371570
rosa_rugosa Rorug04G0238400
rosa_samantha Rh4BG300700 Rh4CG316200 Rh4DG297800
rosa_wichuraiana Rw4G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AbsI CCTCGAGG 1 cut(s) 152
AccII CGCG 2 cut(s) 162, 366
AciI CCGC 2 cut(s) 160, 364
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 2 cut(s) 92, 680
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 6 cut(s) 343, 497, 572, 692, 758, 770
AjiI CACGTC 1 cut(s) 532
AjnI CCWGG 2 cut(s) 132, 405
AluBI AGCT 5 cut(s) 119, 333, 487, 501, 622
AluI AGCT 5 cut(s) 119, 333, 487, 501, 622
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 2 cut(s) 111, 602
Alw44I GTGCAC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 4 cut(s) 135, 225, 259, 408
ApaLI GTGCAC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 2 cut(s) 92, 680
AspS9I GGNCC 5 cut(s) 142, 157, 189, 226, 260
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 395
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 3 cut(s) 142, 157, 189
BaeGI GKGCMC 1 cut(s) 30
BalI TGGCCA 1 cut(s) 410
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 2 cut(s) 428, 600
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 106
BccI CCATC 4 cut(s) 40, 380, 392, 557
BceAI ACGGC 2 cut(s) 430, 476
BciT130I CCWGG 2 cut(s) 134, 407
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 111, 602
BfmI CTRYAG 2 cut(s) 325, 723
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 3 cut(s) 134, 187, 407
Bme18I GGWCC 3 cut(s) 142, 157, 189
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 5 cut(s) 142, 157, 189, 226, 260
BmiI GGNNCC 2 cut(s) 262, 547
BmrFI CCNGG 3 cut(s) 134, 187, 407
BpiI GAAGAC 2 cut(s) 428, 600
BpuEI CTTGAG 1 cut(s) 456
BpuMI CCSGG 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 132, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 341
BseBI CCWGG 2 cut(s) 134, 407
BseDI CCNNGG 2 cut(s) 132, 138
BseGI GGATG 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 4 cut(s) 40, 43, 99, 620
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 115
Bsh1236I CGCG 2 cut(s) 162, 366
BshFI GGCC 4 cut(s) 137, 227, 261, 410
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 111, 602
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 4 cut(s) 137, 227, 261, 410
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 30, 372
Bsp143I GATC 2 cut(s) 219, 400
BspACI CCGC 2 cut(s) 160, 364
BspANI GGCC 4 cut(s) 137, 227, 261, 410
BspFNI CGCG 2 cut(s) 162, 366
BspLI GGNNCC 2 cut(s) 262, 547
BspMAI CTGCAG 1 cut(s) 727
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 132, 138
BssMI GATC 2 cut(s) 219, 400
Bst2UI CCWGG 2 cut(s) 134, 407
Bst6I CTCTTC 2 cut(s) 358, 456
BstC8I GCNNGC 2 cut(s) 368, 489
BstF5I GGATG 1 cut(s) 372
BstFNI CGCG 2 cut(s) 162, 366
BstKTI GATC 2 cut(s) 222, 403
BstMAI GTCTC 2 cut(s) 111, 602
BstMBI GATC 2 cut(s) 219, 400
BstMWI GCNNNNNNNGC 4 cut(s) 321, 330, 389, 638
BstNI CCWGG 2 cut(s) 134, 407
BstNSI RCATGY 1 cut(s) 617
BstSCI CCNGG 3 cut(s) 132, 185, 405
BstSFI CTRYAG 2 cut(s) 325, 723
BstSLI GKGCMC 1 cut(s) 30
BstUI CGCG 2 cut(s) 162, 366
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 2 cut(s) 428, 600
BsuRI GGCC 4 cut(s) 137, 227, 261, 410
BtrI CACGTC 1 cut(s) 532
BtsCI GGATG 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 368, 489
Cfr13I GGNCC 5 cut(s) 142, 157, 189, 226, 260
CviAII CATG 5 cut(s) 58, 80, 193, 482, 614
DpnI GATC 2 cut(s) 221, 402
DpnII GATC 2 cut(s) 219, 400
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 358, 456
EarI CTCTTC 2 cut(s) 358, 456
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 3 cut(s) 142, 157, 189
Eco88I CYCGRG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 132, 405
EcoT38I GRGCYC 1 cut(s) 372
FaeI CATG 5 cut(s) 61, 83, 196, 485, 617
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FaqI GGGAC 1 cut(s) 362
FatI CATG 5 cut(s) 57, 79, 192, 481, 613
FauNDI CATATG 1 cut(s) 634
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 119
HaeIII GGCC 4 cut(s) 137, 227, 261, 410
HapII CCGG 1 cut(s) 187
Hin1II CATG 5 cut(s) 61, 83, 196, 485, 617
HinfI GANTC 2 cut(s) 350, 704
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 28, 270
Hpy188I TCNGA 2 cut(s) 397, 676
Hpy188III TCNNGA 1 cut(s) 458
Hpy8I GTNNAC 2 cut(s) 28, 270
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 1 cut(s) 48
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 3 cut(s) 28, 617, 725
HpyF10VI GCNNNNNNNGC 4 cut(s) 321, 330, 389, 638
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 5 cut(s) 61, 83, 196, 485, 617
Kzo9I GATC 2 cut(s) 219, 400
Lsp1109I GCAGC 1 cut(s) 106
MaeII ACGT 1 cut(s) 531
MalI GATC 2 cut(s) 221, 402
MboI GATC 2 cut(s) 219, 400
MfeI CAATTG 1 cut(s) 687
MhlI GDGCHC 2 cut(s) 30, 372
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 4 cut(s) 92, 100, 680, 687
MluNI TGGCCA 1 cut(s) 410
MlyI GAGTC 1 cut(s) 344
Mox20I TGGCCA 1 cut(s) 410
MscI TGGCCA 1 cut(s) 410
MseI TTAA 2 cut(s) 128, 738
Msp20I TGGCCA 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 3 cut(s) 134, 187, 407
MunI CAATTG 1 cut(s) 687
MvaI CCWGG 2 cut(s) 134, 407
MvnI CGCG 2 cut(s) 162, 366
MwoI GCNNNNNNNGC 4 cut(s) 321, 330, 389, 638
NciI CCSGG 1 cut(s) 187
NdeI CATATG 1 cut(s) 634
NdeII GATC 2 cut(s) 219, 400
NlaIII CATG 5 cut(s) 61, 83, 196, 485, 617
NlaIV GGNNCC 2 cut(s) 262, 547
NmeAIII GCCGAG 1 cut(s) 203
NspI RCATGY 1 cut(s) 617
PaeR7I CTCGAG 1 cut(s) 152
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 393
PfeI GAWTC 1 cut(s) 704
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 132, 405
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 2 cut(s) 132, 405
PspN4I GGNNCC 2 cut(s) 262, 547
PspPI GGNCC 5 cut(s) 142, 157, 189, 226, 260
PspXI VCTCGAGB 1 cut(s) 152
PstI CTGCAG 1 cut(s) 727
PvuII CAGCTG 1 cut(s) 119
SaqAI TTAA 2 cut(s) 128, 738
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 219, 400
Sau96I GGNCC 5 cut(s) 142, 157, 189, 226, 260
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 3 cut(s) 134, 187, 407
SduI GDGCHC 2 cut(s) 30, 372
SetI ASST 9 cut(s) 121, 168, 335, 408, 489, 503, 534, 624, 763
SfcI CTRYAG 2 cut(s) 325, 723
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 3 cut(s) 142, 157, 189
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 152, 471
SmoI CTYRAG 2 cut(s) 152, 471
Sse9I AATT 4 cut(s) 92, 100, 680, 687
SsiI CCGC 2 cut(s) 160, 364
SspI AATATT 1 cut(s) 211
StyD4I CCNGG 3 cut(s) 132, 185, 405
TaiI ACGT 1 cut(s) 534
TaqI TCGA 5 cut(s) 153, 218, 303, 318, 387
TaqII GACCGA 1 cut(s) 130
TasI AATT 4 cut(s) 92, 100, 680, 687
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 2 cut(s) 128, 738
Tru9I TTAA 2 cut(s) 128, 738
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 7 cut(s) 17, 74, 209, 693, 699, 708, 756
VneI GTGCAC 1 cut(s) 26
VpaK11BI GGWCC 3 cut(s) 142, 157, 189
XapI RAATTY 2 cut(s) 92, 680
XceI RCATGY 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XhoI CTCGAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.