Rmu_sc0018457.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018457.1
OG0013315
Physical Location & Seq
Forward (+)
38 .. 652
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018457.1_g000001.1.cds

Sequence Viewer

Length: 615 bp
atgaaaactgcaccctctttttctttctcagataccacccaagattccaagaagaaatctatgaggaaatctagtagtaaagccgccaggactcagagccagagcaacaaccaccagccgccgatgttcgattgcgagtgcttcgactgctacagaagctactggtttaagtgggactcctcccccaaccgcgagctcatccaccaggccattgaggccttcgaggaccacctggcctacggtgagaagcccaagaagaacgccggcagggggaagcgaagagacaagatgggccgccgcgaggcccaaaaatcagccgataattcctccaaagatgaagtctttgtggcggaggagaatgtagggagctcagttgccgaggtggtgttgcctctgtgcgacgtcgtttcggtggggtccccggagaaagttgaggagttggaagtggaagagcaagctgtggaggttaagacggagacgacggcggacgacgtggcgttggttgtacgcgccgcggcggtgagcaaccacaagggcctggccaggaaagtacttccggacgtgttggggctattcaattctcgtttgtggaatctttggagtccgaatgcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.81

Weight (kDa)

6.45

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13090
fragaria_vesca FvH4_4g23440
malus_domestica MD05G1113800.v1.1 MD13G1122500.v1.1 MD16G1123000.v1.1
prunus_persica Prupe.1G222700_v2.0.a1 Prupe.6G184300_v2.0.a1
pyrus_communis pycom13g10660
rosa_chinensis RchiOBHm_Chr4g0429791
rosa_laevigata RLG00000007042
rosa_multiflora Rmu_co8022056.1_g000001 Rmu_sc0018457.1_g000001
rosa_roxburghii Rroxscaffold_5G00371570
rosa_rugosa Rorug04G0238400
rosa_samantha Rh4BG300700 Rh4CG316200 Rh4DG297800
rosa_wichuraiana Rw4G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 405
AccII CGCG 4 cut(s) 192, 300, 510, 515
AccIII TCCGGA 1 cut(s) 556
AcoI YGGCCR 1 cut(s) 540
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 2 cut(s) 507, 552
AfiI CCNNNNNNNGG 2 cut(s) 270, 301
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 1 cut(s) 577
AjiI CACGTC 2 cut(s) 493, 562
AjnI CCWGG 5 cut(s) 86, 204, 231, 537, 542
AluBI AGCT 4 cut(s) 159, 196, 369, 458
AluI AGCT 4 cut(s) 159, 196, 369, 458
Alw21I GWGCWC 2 cut(s) 198, 371
Alw26I GTCTC 2 cut(s) 276, 470
Aor13HI TCCGGA 1 cut(s) 556
AoxI GGCC 7 cut(s) 207, 216, 234, 292, 303, 535, 540
ArsI GACNNNNNNTTYG 2 cut(s) 324, 356
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 5 cut(s) 226, 292, 304, 417, 535
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 2 cut(s) 254, 532
AvaII GGWCC 2 cut(s) 226, 417
BalI TGGCCA 1 cut(s) 542
BanII GRGCYC 2 cut(s) 198, 371
Bbv12I GWGCWC 2 cut(s) 198, 371
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 498
BciT130I CCWGG 5 cut(s) 88, 206, 233, 539, 544
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 276, 470
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 151
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 6 cut(s) 84, 119, 295, 298, 513, 516
BlsI GCNGC 6 cut(s) 85, 120, 296, 299, 514, 517
BmcAI AGTACT 1 cut(s) 552
Bme1390I CCNGG 6 cut(s) 88, 206, 233, 422, 539, 544
Bme18I GGWCC 2 cut(s) 226, 417
BmgBI CACGTC 2 cut(s) 493, 562
BmgT120I GGNCC 5 cut(s) 226, 292, 304, 417, 535
BmiI GGNNCC 2 cut(s) 418, 419
BmrFI CCNGG 6 cut(s) 88, 206, 233, 422, 539, 544
BpuMI CCSGG 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 378, 420, 513
BsaWI WCCGGW 1 cut(s) 556
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 301
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 167
BseAI TCCGGA 1 cut(s) 556
BseBI CCWGG 5 cut(s) 88, 206, 233, 539, 544
BseDI CCNNGG 3 cut(s) 378, 420, 513
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 270, 301
BseMII CTCAG 3 cut(s) 42, 107, 384
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 3 cut(s) 169, 368, 449
Bsh1236I CGCG 4 cut(s) 192, 300, 510, 515
BshFI GGCC 7 cut(s) 209, 218, 236, 294, 305, 537, 542
BsiHKAI GWGCWC 2 cut(s) 198, 371
BsiSI CCGG 3 cut(s) 264, 422, 557
BslFI GGGAC 2 cut(s) 188, 403
BslI CCNNNNNNNGG 2 cut(s) 270, 301
BsmAI GTCTC 2 cut(s) 276, 470
BsmBI CGTCTC 1 cut(s) 470
BsmFI GGGAC 2 cut(s) 188, 403
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 7 cut(s) 209, 218, 236, 294, 305, 537, 542
Bsp1286I GDGCHC 2 cut(s) 198, 371
Bsp13I TCCGGA 1 cut(s) 556
BspANI GGCC 7 cut(s) 209, 218, 236, 294, 305, 537, 542
BspCNI CTCAG 3 cut(s) 41, 106, 383
BspEI TCCGGA 1 cut(s) 556
BspFNI CGCG 4 cut(s) 192, 300, 510, 515
BspLI GGNNCC 2 cut(s) 418, 419
BspQI GCTCTTC 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 378, 420, 513
BssNI GRCGYC 1 cut(s) 402
Bst2UI CCWGG 5 cut(s) 88, 206, 233, 539, 544
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 2 cut(s) 274, 444
BstACI GRCGYC 1 cut(s) 402
BstC8I GCNNGC 3 cut(s) 194, 265, 456
BstDEI CTNAG 3 cut(s) 28, 93, 370
BstDSI CCRYGG 1 cut(s) 513
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 4 cut(s) 192, 300, 510, 515
BstHHI GCGC 1 cut(s) 512
BstMAI GTCTC 2 cut(s) 276, 470
BstMWI GCNNNNNNNGC 3 cut(s) 147, 156, 215
BstNI CCWGG 5 cut(s) 88, 206, 233, 539, 544
BstSCI CCNGG 6 cut(s) 86, 204, 231, 420, 537, 542
BstSFI CTRYAG 1 cut(s) 151
BstUI CGCG 4 cut(s) 192, 300, 510, 515
BsuRI GGCC 7 cut(s) 209, 218, 236, 294, 305, 537, 542
BtgI CCRYGG 1 cut(s) 513
BtrI CACGTC 2 cut(s) 493, 562
BtsCI GGATG 1 cut(s) 198
Cac8I GCNNGC 3 cut(s) 194, 265, 456
CfoI GCGC 1 cut(s) 512
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 5 cut(s) 226, 292, 304, 417, 535
Cfr42I CCGCGG 1 cut(s) 516
Csp6I GTAC 2 cut(s) 506, 551
CviQI GTAC 2 cut(s) 506, 551
DdeI CTNAG 3 cut(s) 28, 93, 370
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 2 cut(s) 274, 444
EarI CTCTTC 2 cut(s) 274, 444
EciI GGCGGA 2 cut(s) 365, 500
Ecl136II GAGCTC 2 cut(s) 196, 369
Eco147I AGGCCT 1 cut(s) 218
Eco24I GRGCYC 2 cut(s) 198, 371
Eco47I GGWCC 2 cut(s) 226, 417
Eco53kI GAGCTC 2 cut(s) 196, 369
EcoICRI GAGCTC 2 cut(s) 196, 369
EcoO109I RGGNCCY 2 cut(s) 417, 535
EcoRII CCWGG 5 cut(s) 86, 204, 231, 537, 542
EcoT38I GRGCYC 2 cut(s) 198, 371
Esp3I CGTCTC 1 cut(s) 470
FaiI YATR 1 cut(s) 62
FaqI GGGAC 2 cut(s) 188, 403
Fnu4HI GCNGC 6 cut(s) 84, 119, 295, 298, 513, 516
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 2 cut(s) 198, 371
Fsp4HI GCNGC 6 cut(s) 84, 119, 295, 298, 513, 516
FspBI CTAG 1 cut(s) 72
GlaI GCGC 1 cut(s) 511
GluI GCNGC 6 cut(s) 84, 119, 295, 298, 513, 516
HaeIII GGCC 7 cut(s) 209, 218, 236, 294, 305, 537, 542
HapII CCGG 3 cut(s) 264, 422, 557
HhaI GCGC 1 cut(s) 512
Hin1I GRCGYC 1 cut(s) 402
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HinfI GANTC 5 cut(s) 44, 91, 176, 592, 601
HpaII CCGG 3 cut(s) 264, 422, 557
HphI GGTGA 2 cut(s) 254, 532
Hpy188I TCNGA 3 cut(s) 31, 96, 606
Hpy188III TCNNGA 1 cut(s) 557
Hpy99I CGWCG 4 cut(s) 404, 407, 484, 494
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 3 cut(s) 402, 492, 561
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 156, 215
HpyF3I CTNAG 3 cut(s) 28, 93, 370
HpySE526I ACGT 3 cut(s) 402, 492, 561
Hsp92I GRCGYC 1 cut(s) 402
HspAI GCGC 1 cut(s) 510
KflI GGGWCCC 1 cut(s) 417
Kpn2I TCCGGA 1 cut(s) 556
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
KspI CCGCGG 1 cut(s) 516
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 1 cut(s) 366
MaeI CTAG 1 cut(s) 72
MaeII ACGT 3 cut(s) 402, 492, 561
MboII GAAGA 4 cut(s) 64, 268, 291, 461
MhlI GDGCHC 2 cut(s) 198, 371
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 2 cut(s) 322, 577
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 3 cut(s) 85, 170, 610
MmeI TCCRAC 1 cut(s) 420
Mox20I TGGCCA 1 cut(s) 542
MroI TCCGGA 1 cut(s) 556
MroNI GCCGGC 1 cut(s) 263
MscI TGGCCA 1 cut(s) 542
MseI TTAA 2 cut(s) 168, 468
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 3 cut(s) 264, 422, 557
MspR9I CCNGG 6 cut(s) 88, 206, 233, 422, 539, 544
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 5 cut(s) 88, 206, 233, 539, 544
MvnI CGCG 4 cut(s) 192, 300, 510, 515
MwoI GCNNNNNNNGC 3 cut(s) 147, 156, 215
NaeI GCCGGC 1 cut(s) 265
NciI CCSGG 1 cut(s) 422
NgoMIV GCCGGC 1 cut(s) 263
NlaIV GGNNCC 2 cut(s) 418, 419
NmeAIII GCCGAG 1 cut(s) 403
PceI AGGCCT 1 cut(s) 218
PciSI GCTCTTC 1 cut(s) 444
PctI GAATGC 1 cut(s) 613
PdiI GCCGGC 1 cut(s) 265
PfeI GAWTC 2 cut(s) 44, 592
PkrI GCNGC 6 cut(s) 85, 120, 296, 299, 514, 517
PleI GAGTC 3 cut(s) 85, 170, 609
PpsI GAGTC 3 cut(s) 85, 170, 609
PpuMI RGGWCCY 1 cut(s) 417
Psp124BI GAGCTC 2 cut(s) 198, 371
Psp5II RGGWCCY 1 cut(s) 417
Psp6I CCWGG 5 cut(s) 86, 204, 231, 537, 542
PspGI CCWGG 5 cut(s) 86, 204, 231, 537, 542
PspN4I GGNNCC 2 cut(s) 418, 419
PspPI GGNCC 5 cut(s) 226, 292, 304, 417, 535
PspPPI RGGWCCY 1 cut(s) 417
RsaI GTAC 2 cut(s) 507, 552
RsaNI GTAC 2 cut(s) 506, 551
SacI GAGCTC 2 cut(s) 198, 371
SacII CCGCGG 1 cut(s) 516
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 2 cut(s) 168, 468
SatI GCNGC 6 cut(s) 84, 119, 295, 298, 513, 516
Sau96I GGNCC 5 cut(s) 226, 292, 304, 417, 535
ScaI AGTACT 1 cut(s) 552
SchI GAGTC 3 cut(s) 85, 170, 610
ScrFI CCNGG 6 cut(s) 88, 206, 233, 422, 539, 544
SduI GDGCHC 2 cut(s) 198, 371
SfcI CTRYAG 1 cut(s) 151
SfiI GGCCNNNNNGGCC 1 cut(s) 215
Sfr303I CCGCGG 1 cut(s) 516
SgrBI CCGCGG 1 cut(s) 516
SinI GGWCC 2 cut(s) 226, 417
Sse9I AATT 2 cut(s) 322, 577
SseBI AGGCCT 1 cut(s) 218
SspMI CTAG 1 cut(s) 72
SstI GAGCTC 2 cut(s) 198, 371
StuI AGGCCT 1 cut(s) 218
StyD4I CCNGG 6 cut(s) 86, 204, 231, 420, 537, 542
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 3 cut(s) 405, 495, 564
TaqI TCGA 3 cut(s) 129, 144, 222
TasI AATT 2 cut(s) 322, 577
TatI WGTACW 1 cut(s) 550
TauI GCSGC 6 cut(s) 86, 121, 297, 300, 515, 518
TfiI GAWTC 2 cut(s) 44, 592
Tru1I TTAA 2 cut(s) 168, 468
Tru9I TTAA 2 cut(s) 168, 468
TspDTI ATGAA 2 cut(s) 17, 351
TspGWI ACGGA 1 cut(s) 488
VpaK11BI GGWCC 2 cut(s) 226, 417
XspI CTAG 1 cut(s) 72
ZraI GACGTC 1 cut(s) 403
ZrmI AGTACT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.