Prupe.1G421600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013623
Physical Location & Seq
Reverse (-)
36413908 .. 36416638
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G421600.1

Sequence Viewer

Length: 1023 bp
ATGGAGCGCACCAACAAGAAGCCCTCGTCTGTACCCACCAACTACGTCACCATTCTTGAGCTCAAAGAGCGCTGGCTCAAAGAGAAGGAACGACAAAGAGATGAGGAGGAACGACAACGAAAGGAGAAGGAACAAGAAGAAGAGGAGCTCCGACAGCAAAAGCTCCGAGAAGAGCAGGGAAAGCAACAGAAGCAAAACGCCGTCGTTCTGAAAGCCCGAACCGATTCCAGACCTACGGATCGCGGTAATCAGACACAGTTTCGGCCGGTGGATCGGAGGAGTGTTTCGGAGCGCGAGGGTGCTGAGCTGGAGGGGAAAAAGCAACCCGTCGTACAGAAAACCGAAGCCGATTTCAAGCCTTGGAATCGCAGTGGTCGGACAAAGTTTGGGCCGGTTAATCGGACTGTTTCGGAGTGCGAGGGTGCTGAGCTGGAGGGGAAGAAAAACGAGGAACCAGAGGAGAAGAAGTTATGGAAGAAGAAAAAGTCGAAGAATAAGAAGAATGTTAGGGCAGAGAAGGGGGAAGTGAATGAGAAGGAATGTATAGTAGACGCGCCTCAAGCGAGTTGCGAGAAGGGAGACAATCAGGCGACAGGGAAGGAAGAAAAGAGACCTGAAATCGAAATTAGGGCAAAGAGCGAGAATGTGCTTCCGACTGCGGAGATTGTGCCGAAATTTAGGGATTTATCGGTGAATGGGGAGACTGGAAAAGGGGATGATAAGTTGAAGAGACCAAGAATAGTTGATCGCCGTGGTAATGGAGGAATTAGGGGTTATTATGAGAGGCCTGGTCGCTGTGATATGCAGAAACAGAGAGGTTATGCTGGGAGGGTTTGGGTTAAGAAAGGAGAAGTTGCTGATGACAATGGCAGTGGAGTTCAACAAAGCTTGGAGCGCAATGATGTTATTTCTGGTCAAACTGGAACGTCTTCGAATGCAAGGTCACTGAAATTCGCTGGAGGTATGAGCAGGAATAATCCAGGACGATGGTGGCTAAGCAGACACGAACCGAAGTGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

39.08

Weight (kDa)

9.59

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32920
malus_domestica MD15G1067700.v1.1
prunus_persica Prupe.1G421600_v2.0.a1
pyrus_communis pycom08g06650 pycom15g06420
rosa_chinensis RchiOBHm_Chr6g0309801
rosa_laevigata RLG00000010535
rosa_multiflora Rmu_co8328543.1_g000001 Rmu_ssc0000373.1_g000006
rosa_roxburghii Rroxscaffold_7G00159170
rosa_rugosa Rorug06G0374700 Rorug06G0374800 Rorug06G0374900
rosa_samantha Rh6AG488200 Rh6BG497800 Rh6CG502600 Rh6DG488700
rosa_wichuraiana Rw6G042520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 549
AccII CGCG 3 cut(s) 243, 294, 554
AciI CCGC 2 cut(s) 243, 659
AclWI GGATC 2 cut(s) 246, 279
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 2 cut(s) 674, 950
AfaI GTAC 2 cut(s) 33, 333
AfeI AGCGCT 1 cut(s) 71
AgsI TTSAA 3 cut(s) 355, 727, 881
AjnI CCWGG 2 cut(s) 787, 979
AluBI AGCT 6 cut(s) 61, 148, 163, 307, 430, 888
AluI AGCT 6 cut(s) 61, 148, 163, 307, 430, 888
Alw21I GWGCWC 2 cut(s) 63, 150
Alw26I GTCTC 4 cut(s) 573, 604, 695, 724
AlwI GGATC 2 cut(s) 246, 279
Aor51HI AGCGCT 1 cut(s) 71
AoxI GGCC 3 cut(s) 263, 389, 785
ApoI RAATTY 2 cut(s) 674, 950
ArsI GACNNNNNNTTYG 2 cut(s) 926, 958
Asp700I GAANNNNTTC 2 cut(s) 223, 928
AspLEI GCGC 5 cut(s) 9, 72, 294, 556, 897
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 2 cut(s) 40, 703
AsuII TTCGAA 1 cut(s) 932
BanII GRGCYC 2 cut(s) 63, 150
BbsI GAAGAC 1 cut(s) 921
Bbv12I GWGCWC 2 cut(s) 63, 150
BccI CCATC 1 cut(s) 981
BceAI ACGGC 2 cut(s) 185, 735
BciT130I CCWGG 2 cut(s) 789, 981
BcoDI GTCTC 4 cut(s) 573, 604, 695, 724
BfoI RGCGCY 1 cut(s) 73
BlpI GCTNAGC 3 cut(s) 303, 426, 995
Bme1390I CCNGG 2 cut(s) 789, 981
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 2 cut(s) 789, 981
BpiI GAAGAC 1 cut(s) 921
BpmI CTGGAG 3 cut(s) 329, 452, 978
Bpu1102I GCTNAGC 3 cut(s) 303, 426, 995
Bpu14I TTCGAA 1 cut(s) 932
BpuEI CTTGAG 2 cut(s) 77, 543
BsaI GGTCTC 2 cut(s) 604, 724
BsaJI CCNNGG 2 cut(s) 359, 751
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bse118I RCCGGY 2 cut(s) 265, 391
Bse1I ACTGG 2 cut(s) 709, 925
Bse3DI GCAATG 1 cut(s) 904
BseBI CCWGG 2 cut(s) 789, 981
BseDI CCNNGG 2 cut(s) 359, 751
BseGI GGATG 1 cut(s) 721
BseMI GCAATG 1 cut(s) 904
BseMII CTCAG 2 cut(s) 294, 417
BseNI ACTGG 2 cut(s) 709, 925
BseRI GAGGAG 4 cut(s) 119, 158, 292, 473
BseX3I CGGCCG 1 cut(s) 263
BseYI CCCAGC 1 cut(s) 824
Bsh1236I CGCG 3 cut(s) 243, 294, 554
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 3 cut(s) 265, 391, 787
BsiEI CGRYCG 1 cut(s) 266
BsiHKAI GWGCWC 2 cut(s) 63, 150
BsiSI CCGG 2 cut(s) 266, 392
BsmAI GTCTC 4 cut(s) 573, 604, 695, 724
BsmI GAATGC 1 cut(s) 940
BsnI GGCC 3 cut(s) 265, 391, 787
Bso31I GGTCTC 2 cut(s) 604, 724
Bsp119I TTCGAA 1 cut(s) 932
Bsp1286I GDGCHC 2 cut(s) 63, 150
Bsp143I GATC 3 cut(s) 238, 271, 745
Bsp1720I GCTNAGC 3 cut(s) 303, 426, 995
BspACI CCGC 2 cut(s) 243, 659
BspANI GGCC 3 cut(s) 265, 391, 787
BspCNI CTCAG 2 cut(s) 295, 418
BspFNI CGCG 3 cut(s) 243, 294, 554
BspLI GGNNCC 1 cut(s) 453
BspPI GGATC 2 cut(s) 246, 279
BspQI GCTCTTC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 932
BspTNI GGTCTC 2 cut(s) 604, 724
BsrDI GCAATG 1 cut(s) 904
BsrFI RCCGGY 2 cut(s) 265, 391
BsrI ACTGG 2 cut(s) 709, 925
BssAI RCCGGY 2 cut(s) 265, 391
BssECI CCNNGG 2 cut(s) 359, 751
BssMI GATC 3 cut(s) 238, 271, 745
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 2 cut(s) 789, 981
Bst4CI ACNGT 2 cut(s) 258, 406
Bst6I CTCTTC 3 cut(s) 135, 165, 722
BstBI TTCGAA 1 cut(s) 932
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 3 cut(s) 303, 426, 995
BstDSI CCRYGG 1 cut(s) 751
BstF5I GGATG 1 cut(s) 721
BstFNI CGCG 3 cut(s) 243, 294, 554
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 5 cut(s) 9, 72, 294, 556, 897
BstKTI GATC 3 cut(s) 241, 274, 748
BstMAI GTCTC 4 cut(s) 573, 604, 695, 724
BstMBI GATC 3 cut(s) 238, 271, 745
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 6 cut(s) 67, 154, 181, 190, 560, 894
BstNI CCWGG 2 cut(s) 789, 981
BstSCI CCNGG 2 cut(s) 787, 979
BstUI CGCG 3 cut(s) 243, 294, 554
BstV2I GAAGAC 1 cut(s) 921
BstXI CCANNNNNNTGG 1 cut(s) 987
BstZI CGGCCG 1 cut(s) 263
BsuRI GGCC 3 cut(s) 265, 391, 787
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 1 cut(s) 721
BtsI GCAGTG 2 cut(s) 376, 877
BtsIMutI CAGTG 3 cut(s) 376, 877, 944
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 5 cut(s) 9, 72, 294, 556, 897
Cfr10I RCCGGY 2 cut(s) 265, 391
Cfr13I GGNCC 1 cut(s) 389
CseI GACGC 1 cut(s) 560
Csp6I GTAC 2 cut(s) 32, 332
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviQI GTAC 2 cut(s) 32, 332
DdeI CTNAG 3 cut(s) 303, 426, 995
DpnI GATC 3 cut(s) 240, 273, 747
DpnII GATC 3 cut(s) 238, 271, 745
EaeI YGGCCR 1 cut(s) 263
EagI CGGCCG 1 cut(s) 263
Eam1104I CTCTTC 3 cut(s) 135, 165, 722
EarI CTCTTC 3 cut(s) 135, 165, 722
Ecl136II GAGCTC 2 cut(s) 61, 148
EclXI CGGCCG 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 359
Eco147I AGGCCT 1 cut(s) 787
Eco24I GRGCYC 2 cut(s) 63, 150
Eco31I GGTCTC 2 cut(s) 604, 724
Eco47III AGCGCT 1 cut(s) 71
Eco52I CGGCCG 1 cut(s) 263
Eco53kI GAGCTC 2 cut(s) 61, 148
EcoICRI GAGCTC 2 cut(s) 61, 148
EcoRII CCWGG 2 cut(s) 787, 979
EcoT14I CCWWGG 1 cut(s) 359
EcoT38I GRGCYC 2 cut(s) 63, 150
ErhI CCWWGG 1 cut(s) 359
FaiI YATR 7 cut(s) 472, 545, 780, 803, 822, 965, 1021
FblI GTMKAC 1 cut(s) 549
FokI GGATG 1 cut(s) 728
FriOI GRGCYC 2 cut(s) 63, 150
GlaI GCGC 5 cut(s) 8, 71, 293, 555, 896
GsaI CCCAGC 1 cut(s) 828
GsuI CTGGAG 3 cut(s) 329, 452, 978
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 3 cut(s) 265, 391, 787
HapII CCGG 2 cut(s) 266, 392
HgaI GACGC 1 cut(s) 560
HhaI GCGC 5 cut(s) 9, 72, 294, 556, 897
Hin6I GCGC 5 cut(s) 7, 70, 292, 554, 895
HinP1I GCGC 5 cut(s) 7, 70, 292, 554, 895
HindIII AAGCTT 1 cut(s) 886
HinfI GANTC 2 cut(s) 224, 364
HpaII CCGG 2 cut(s) 266, 392
HphI GGTGA 2 cut(s) 40, 703
Hpy166II GTNNAC 1 cut(s) 550
Hpy188III TCNNGA 2 cut(s) 56, 228
Hpy8I GTNNAC 1 cut(s) 550
Hpy99I CGWCG 2 cut(s) 206, 332
HpyAV CCTTC 6 cut(s) 79, 121, 511, 529, 568, 592
HpyCH4III ACNGT 2 cut(s) 258, 406
HpyCH4IV ACGT 2 cut(s) 45, 926
HpyCH4V TGCA 2 cut(s) 805, 938
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 154, 181, 190, 560, 894
HpyF3I CTNAG 3 cut(s) 303, 426, 995
HpySE526I ACGT 2 cut(s) 45, 926
HspAI GCGC 5 cut(s) 7, 70, 292, 554, 895
Kzo9I GATC 3 cut(s) 238, 271, 745
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 6 cut(s) 4, 145, 153, 168, 289, 892
MaeII ACGT 2 cut(s) 45, 926
MaeIII GTNAC 2 cut(s) 46, 942
MalI GATC 3 cut(s) 240, 273, 747
MboI GATC 3 cut(s) 238, 271, 745
MhlI GDGCHC 2 cut(s) 63, 150
MluCI AATT 4 cut(s) 624, 674, 765, 950
MmeI TCCRAC 3 cut(s) 175, 356, 677
MroXI GAANNNNTTC 2 cut(s) 223, 928
MseI TTAA 2 cut(s) 396, 840
MspI CCGG 2 cut(s) 266, 392
MspR9I CCNGG 2 cut(s) 789, 981
Mva1269I GAATGC 1 cut(s) 940
MvaI CCWGG 2 cut(s) 789, 981
MvnI CGCG 3 cut(s) 243, 294, 554
MwoI GCNNNNNNNGC 6 cut(s) 67, 154, 181, 190, 560, 894
NdeII GATC 3 cut(s) 238, 271, 745
NlaIV GGNNCC 1 cut(s) 453
NmuCI GTSAC 2 cut(s) 46, 942
NspV TTCGAA 1 cut(s) 932
PceI AGGCCT 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 165
PctI GAATGC 1 cut(s) 940
PdmI GAANNNNTTC 2 cut(s) 223, 928
PfeI GAWTC 2 cut(s) 224, 364
PfoI TCCNGGA 1 cut(s) 979
Psp124BI GAGCTC 2 cut(s) 63, 150
Psp6I CCWGG 2 cut(s) 787, 979
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 2 cut(s) 787, 979
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 1 cut(s) 389
RsaI GTAC 2 cut(s) 33, 333
RsaNI GTAC 2 cut(s) 32, 332
SacI GAGCTC 2 cut(s) 63, 150
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 396, 840
Sau3AI GATC 3 cut(s) 238, 271, 745
Sau96I GGNCC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 789, 981
SduI GDGCHC 2 cut(s) 63, 150
SfuI TTCGAA 1 cut(s) 932
SmlI CTYRAG 2 cut(s) 56, 558
SmoI CTYRAG 2 cut(s) 56, 558
Sse9I AATT 4 cut(s) 624, 674, 765, 950
SseBI AGGCCT 1 cut(s) 787
SsiI CCGC 2 cut(s) 243, 659
SstI GAGCTC 2 cut(s) 63, 150
StuI AGGCCT 1 cut(s) 787
StyD4I CCNGG 2 cut(s) 787, 979
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 2 cut(s) 258, 406
TaiI ACGT 2 cut(s) 48, 929
TaqI TCGA 3 cut(s) 488, 621, 932
TasI AATT 4 cut(s) 624, 674, 765, 950
TfiI GAWTC 2 cut(s) 224, 364
Tru1I TTAA 2 cut(s) 396, 840
Tru9I TTAA 2 cut(s) 396, 840
TscAI CASTG 3 cut(s) 376, 877, 951
TseFI GTSAC 2 cut(s) 46, 942
Tsp45I GTSAC 2 cut(s) 46, 942
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 3 cut(s) 376, 877, 951
XapI RAATTY 2 cut(s) 674, 950
XcmI CCANNNNNNNNNTGG 1 cut(s) 987
XmiI GTMKAC 1 cut(s) 549
XmnI GAANNNNTTC 2 cut(s) 223, 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.