pycom08g06650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013623
Physical Location & Seq
Reverse (-)
5203025 .. 5204900
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06650.3

Sequence Viewer

Length: 1188 bp
ATGGCGGACACCAAATTGAAGAGGCCCCAATCTGTGCCCGCCAACTACGTCACCCTCAACGACCTTAAAGAGCGCTGGCTCAGAGACCAGGAACGACAGCAGGAGGAAGAACGACGGCAAGAGGAGAAGAAACGACGGGAAGAGGAGGAGAAACGGCGACGAGAGGGGAGGGAACAGCGAGAAGAAGAGCTCCGGCAGCGGAAGCTCCGAGAAGAAGAGGCGAAGCAGAAGAGGCAAAACGCCATCGTTCGGAACCTGGAAACCGGTTCCAAGCCTAGGTATGGTGGTAATCGGGGACAGCTTCGGCCAGTTAATCGGAGTGTTTCGGAGTTCGGTGGGGCTGAGGTGGAGGGGAAAGGAAGCGAGGAAGAAAAGCCGAAGCAAAACGCTGTCGTTAAGAGAGCCGAAACCGATGACAAGCCGAGGAATCGCGAGAATCGGGAAGAGTTTCGGCCGGTTTATCGGAGTGTTTCGGAATGCGAGGATATTGAGCTGGAGGGAAAAAGAGGCGAGGTAGGAGAACCGAAGGAAAACGTCGTCGTTCGGAGAACCGCAACGGGTAACAATTTGAGAAATGGGAATCGGGCACAGTTTCGGACGGTGAATCGGGTTGGTCTGGCACCCTTGCTGGAGGGGAAAAGAAGCGAGGAAGAAGAGGCGAAGCAGAACGCCGTCTTTCAAAGAACCGGAACCAGTAACAATCCGAGAAATCGGAGTGATCGGGCACAGTTTCGGCCAGTTAATCGGAGTGTTCCGGAGCGCGATGGGACTGTGCTGGAGGGGAAAAGAAGCGAGGAAGAAAAGAAGAGGCGAAGCAAAACGCCGTCGTTCAAAGAATCGGAACCGGTAACAATCCAAGAAATCGGAGTGATCGGGCACAGTTTCGGCCAGTTAATCAGAGTGTTCCGGAGCGCGATGAGACTGTGCTGGAGGGGAAAAGAAGCGAGGAAGAAAAGCCGAAGCAAAACGCTGTGGTTAAGAGAACCGAAACCGCTGAAAGACCGAGGAATCGCGGTAATCGGGAAGAGTTTCGGCCGATTAATAGGAATGTTTCGGAATGTGAAGATGCTGAGCTGGAGGAAAAAAGAAACGAGGAAGGACAGCCGAGGGAAAACGGCGTCATTCGGAGAACCGGAAAGGGTAACAATCCGAGAAATTGGAGTGATCGGGCGCAGTTTCGGACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

46.1

Weight (kDa)

10.43

Isoelectric Point (pI)

74.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32920
malus_domestica MD15G1067700.v1.1
prunus_persica Prupe.1G421600_v2.0.a1
pyrus_communis pycom08g06650 pycom15g06420
rosa_chinensis RchiOBHm_Chr6g0309801
rosa_laevigata RLG00000010535
rosa_multiflora Rmu_co8328543.1_g000001 Rmu_ssc0000373.1_g000006
rosa_roxburghii Rroxscaffold_7G00159170
rosa_rugosa Rorug06G0374700 Rorug06G0374800 Rorug06G0374900
rosa_samantha Rh6AG488200 Rh6BG497800 Rh6CG502600 Rh6DG488700
rosa_wichuraiana Rw6G042520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 619
AccII CGCG 4 cut(s) 432, 762, 914, 1013
AccIII TCCGGA 2 cut(s) 754, 906
AciI CCGC 6 cut(s) 5, 39, 199, 552, 992, 1013
AcoI YGGCCR 5 cut(s) 305, 452, 734, 886, 1033
AcyI GRCGYC 1 cut(s) 1118
AfeI AGCGCT 1 cut(s) 74
AfiI CCNNNNNNNGG 3 cut(s) 249, 276, 281
AgeI ACCGGT 2 cut(s) 263, 844
AgsI TTSAA 3 cut(s) 19, 680, 832
AjnI CCWGG 2 cut(s) 87, 255
AluBI AGCT 5 cut(s) 190, 205, 301, 493, 1074
AluI AGCT 5 cut(s) 190, 205, 301, 493, 1074
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 78, 913
Aor13HI TCCGGA 2 cut(s) 754, 906
Aor51HI AGCGCT 1 cut(s) 74
AoxI GGCC 6 cut(s) 23, 305, 452, 734, 886, 1033
ApeKI GCWGC 1 cut(s) 196
AseI ATTAAT 1 cut(s) 1040
AsiGI ACCGGT 2 cut(s) 263, 844
Asp700I GAANNNNTTC 2 cut(s) 447, 1028
AspA2I CCTAGG 1 cut(s) 275
AspLEI GCGC 4 cut(s) 75, 762, 914, 1173
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 43, 613
AvrII CCTAGG 1 cut(s) 275
BaeGI GKGCMC 4 cut(s) 39, 589, 727, 879
BanI GGYRCC 1 cut(s) 619
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 192
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 251, 758
BceAI ACGGC 5 cut(s) 131, 170, 656, 808, 1131
BciT130I CCWGG 2 cut(s) 89, 257
BcoDI GTCTC 2 cut(s) 78, 913
BfaI CTAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 76
BisI GCNGC 1 cut(s) 197
BlnI CCTAGG 1 cut(s) 275
BlpI GCTNAGC 1 cut(s) 1070
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 2 cut(s) 89, 257
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 6 cut(s) 26, 254, 268, 621, 691, 843
BmrFI CCNGG 2 cut(s) 89, 257
BmsI GCATC 1 cut(s) 1056
BpmI CTGGAG 5 cut(s) 515, 650, 797, 949, 1096
Bpu10I CCTNAGC 1 cut(s) 342
Bpu1102I GCTNAGC 1 cut(s) 1070
BsaHI GRCGYC 1 cut(s) 1118
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 4 cut(s) 275, 422, 1003, 1105
BsaWI WCCGGW 6 cut(s) 263, 686, 754, 844, 906, 1132
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 276, 281
Bse118I RCCGGY 3 cut(s) 263, 454, 844
Bse1I ACTGG 4 cut(s) 308, 693, 737, 889
BseAI TCCGGA 2 cut(s) 754, 906
BseBI CCWGG 2 cut(s) 89, 257
BseDI CCNNGG 4 cut(s) 275, 422, 1003, 1105
BseLI CCNNNNNNNGG 3 cut(s) 249, 276, 281
BseMII CTCAG 3 cut(s) 94, 333, 1061
BseNI ACTGG 4 cut(s) 308, 693, 737, 889
BseRI GAGGAG 3 cut(s) 137, 158, 161
BseSI GKGCMC 4 cut(s) 39, 589, 727, 879
BseX3I CGGCCG 2 cut(s) 452, 1033
BseXI GCAGC 1 cut(s) 208
Bsh1236I CGCG 4 cut(s) 432, 762, 914, 1013
Bsh1285I CGRYCG 2 cut(s) 455, 1036
BshFI GGCC 6 cut(s) 25, 307, 454, 736, 888, 1035
BshNI GGYRCC 1 cut(s) 619
BshTI ACCGGT 2 cut(s) 263, 844
BsiEI CGRYCG 2 cut(s) 455, 1036
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 8 cut(s) 193, 264, 455, 687, 755, 845, 907, 1133
BslFI GGGAC 2 cut(s) 309, 781
BslI CCNNNNNNNGG 3 cut(s) 249, 276, 281
BsmAI GTCTC 2 cut(s) 78, 913
BsmFI GGGAC 2 cut(s) 309, 781
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 6 cut(s) 25, 307, 454, 736, 888, 1035
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 5 cut(s) 39, 192, 589, 727, 879
Bsp13I TCCGGA 2 cut(s) 754, 906
Bsp143I GATC 3 cut(s) 718, 870, 1164
Bsp1720I GCTNAGC 1 cut(s) 1070
Bsp68I TCGCGA 1 cut(s) 432
BspACI CCGC 6 cut(s) 5, 39, 199, 552, 992, 1013
BspANI GGCC 6 cut(s) 25, 307, 454, 736, 888, 1035
BspCNI CTCAG 3 cut(s) 93, 334, 1062
BspEI TCCGGA 2 cut(s) 754, 906
BspFNI CGCG 4 cut(s) 432, 762, 914, 1013
BspLI GGNNCC 6 cut(s) 26, 254, 268, 621, 691, 843
BspQI GCTCTTC 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 619
BspTNI GGTCTC 1 cut(s) 78
BsrFI RCCGGY 3 cut(s) 263, 454, 844
BsrI ACTGG 4 cut(s) 308, 693, 737, 889
BssAI RCCGGY 3 cut(s) 263, 454, 844
BssECI CCNNGG 4 cut(s) 275, 422, 1003, 1105
BssMI GATC 3 cut(s) 718, 870, 1164
BssNI GRCGYC 1 cut(s) 1118
BssT1I CCWWGG 1 cut(s) 275
Bst2UI CCWGG 2 cut(s) 89, 257
Bst4CI ACNGT 7 cut(s) 591, 601, 729, 772, 881, 924, 1185
Bst6I CTCTTC 9 cut(s) 14, 135, 180, 210, 224, 438, 648, 800, 1019
BstACI GRCGYC 1 cut(s) 1118
BstC8I GCNNGC 2 cut(s) 39, 77
BstDEI CTNAG 3 cut(s) 80, 342, 1070
BstFNI CGCG 4 cut(s) 432, 762, 914, 1013
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 4 cut(s) 75, 762, 914, 1173
BstKTI GATC 3 cut(s) 721, 873, 1167
BstMAI GTCTC 2 cut(s) 78, 913
BstMBI GATC 3 cut(s) 718, 870, 1164
BstMCI CGRYCG 2 cut(s) 455, 1036
BstMWI GCNNNNNNNGC 3 cut(s) 196, 202, 232
BstNI CCWGG 2 cut(s) 89, 257
BstSCI CCNGG 2 cut(s) 87, 255
BstSLI GKGCMC 4 cut(s) 39, 589, 727, 879
BstUI CGCG 4 cut(s) 432, 762, 914, 1013
BstV1I GCAGC 1 cut(s) 208
BstZI CGGCCG 2 cut(s) 452, 1033
BsuRI GGCC 6 cut(s) 25, 307, 454, 736, 888, 1035
BtgZI GCGATG 2 cut(s) 777, 929
BtuMI TCGCGA 1 cut(s) 432
Cac8I GCNNGC 2 cut(s) 39, 77
CfoI GCGC 4 cut(s) 75, 762, 914, 1173
Cfr10I RCCGGY 3 cut(s) 263, 454, 844
Cfr13I GGNCC 1 cut(s) 24
CseI GACGC 1 cut(s) 1107
CspAI ACCGGT 2 cut(s) 263, 844
DdeI CTNAG 3 cut(s) 80, 342, 1070
DpnI GATC 3 cut(s) 720, 872, 1166
DpnII GATC 3 cut(s) 718, 870, 1164
EaeI YGGCCR 5 cut(s) 305, 452, 734, 886, 1033
EagI CGGCCG 2 cut(s) 452, 1033
Eam1104I CTCTTC 9 cut(s) 14, 135, 180, 210, 224, 438, 648, 800, 1019
EarI CTCTTC 9 cut(s) 14, 135, 180, 210, 224, 438, 648, 800, 1019
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 2 cut(s) 452, 1033
Eco130I CCWWGG 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 78
Eco47III AGCGCT 1 cut(s) 74
Eco52I CGGCCG 2 cut(s) 452, 1033
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 87, 255
EcoT14I CCWWGG 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 275
FaiI YATR 1 cut(s) 282
FaqI GGGAC 2 cut(s) 309, 781
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 1 cut(s) 276
GlaI GCGC 4 cut(s) 74, 761, 913, 1172
GluI GCNGC 1 cut(s) 197
GsuI CTGGAG 5 cut(s) 515, 650, 797, 949, 1096
HaeII RGCGCY 1 cut(s) 76
HaeIII GGCC 6 cut(s) 25, 307, 454, 736, 888, 1035
HapII CCGG 8 cut(s) 193, 264, 455, 687, 755, 845, 907, 1133
HgaI GACGC 1 cut(s) 1107
HhaI GCGC 4 cut(s) 75, 762, 914, 1173
Hin1I GRCGYC 1 cut(s) 1118
Hin6I GCGC 4 cut(s) 73, 760, 912, 1171
HinP1I GCGC 4 cut(s) 73, 760, 912, 1171
HinfI GANTC 6 cut(s) 427, 436, 580, 604, 836, 1008
HpaII CCGG 8 cut(s) 193, 264, 455, 687, 755, 845, 907, 1133
HphI GGTGA 2 cut(s) 43, 613
Hpy188III TCNNGA 5 cut(s) 431, 440, 755, 907, 1021
Hpy99I CGWCG 6 cut(s) 117, 138, 162, 539, 542, 829
HpyAV CCTTC 2 cut(s) 520, 1090
HpyCH4III ACNGT 7 cut(s) 591, 601, 729, 772, 881, 924, 1185
HpyCH4IV ACGT 2 cut(s) 48, 534
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 202, 232
HpyF3I CTNAG 3 cut(s) 80, 342, 1070
HpySE526I ACGT 2 cut(s) 48, 534
Hsp92I GRCGYC 1 cut(s) 1118
HspAI GCGC 4 cut(s) 73, 760, 912, 1171
Kpn2I TCCGGA 2 cut(s) 754, 906
Kzo9I GATC 3 cut(s) 718, 870, 1164
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 4 cut(s) 195, 210, 757, 909
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 1056
MaeI CTAG 1 cut(s) 276
MaeII ACGT 2 cut(s) 48, 534
MaeIII GTNAC 5 cut(s) 49, 560, 695, 847, 1141
MalI GATC 3 cut(s) 720, 872, 1166
MboI GATC 3 cut(s) 718, 870, 1164
MhlI GDGCHC 5 cut(s) 39, 192, 589, 727, 879
MluCI AATT 3 cut(s) 14, 565, 1155
MroI TCCGGA 2 cut(s) 754, 906
MroXI GAANNNNTTC 2 cut(s) 447, 1028
MseI TTAA 7 cut(s) 66, 312, 396, 741, 893, 977, 1040
MspA1I CMGCKG 2 cut(s) 199, 994
MspI CCGG 8 cut(s) 193, 264, 455, 687, 755, 845, 907, 1133
MspR9I CCNGG 2 cut(s) 89, 257
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 2 cut(s) 89, 257
MvnI CGCG 4 cut(s) 432, 762, 914, 1013
MwoI GCNNNNNNNGC 3 cut(s) 196, 202, 232
NdeII GATC 3 cut(s) 718, 870, 1164
NlaIV GGNNCC 6 cut(s) 26, 254, 268, 621, 691, 843
NmeAIII GCCGAG 2 cut(s) 447, 1130
NmuCI GTSAC 1 cut(s) 49
NruI TCGCGA 1 cut(s) 432
PciSI GCTCTTC 1 cut(s) 180
PctI GAATGC 1 cut(s) 482
PdmI GAANNNNTTC 2 cut(s) 447, 1028
PfeI GAWTC 6 cut(s) 427, 436, 580, 604, 836, 1008
PinAI ACCGGT 2 cut(s) 263, 844
PkrI GCNGC 1 cut(s) 198
PshBI ATTAAT 1 cut(s) 1040
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 87, 255
PspGI CCWGG 2 cut(s) 87, 255
PspN4I GGNNCC 6 cut(s) 26, 254, 268, 621, 691, 843
PspPI GGNCC 1 cut(s) 24
RruI TCGCGA 1 cut(s) 432
SacI GAGCTC 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 7 cut(s) 66, 312, 396, 741, 893, 977, 1040
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 3 cut(s) 718, 870, 1164
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 2 cut(s) 89, 257
SduI GDGCHC 5 cut(s) 39, 192, 589, 727, 879
SfaNI GCATC 1 cut(s) 1056
Sse9I AATT 3 cut(s) 14, 565, 1155
SsiI CCGC 6 cut(s) 5, 39, 199, 552, 992, 1013
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 87, 255
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 7 cut(s) 591, 601, 729, 772, 881, 924, 1185
TaiI ACGT 2 cut(s) 51, 537
TaqII GACCGA 1 cut(s) 1017
TasI AATT 3 cut(s) 14, 565, 1155
TfiI GAWTC 6 cut(s) 427, 436, 580, 604, 836, 1008
Tru1I TTAA 7 cut(s) 66, 312, 396, 741, 893, 977, 1040
Tru9I TTAA 7 cut(s) 66, 312, 396, 741, 893, 977, 1040
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 49
VspI ATTAAT 1 cut(s) 1040
XmaJI CCTAGG 1 cut(s) 275
XmnI GAANNNNTTC 2 cut(s) 447, 1028
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.