Rorug06G0374900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013623
Physical Location & Seq
Reverse (-)
52137314 .. 52138367
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0374900.1

Sequence Viewer

Length: 570 bp
ATGGCGATTGATGAGTATGATTTCACAAAACCAGGAGCTATCCCATTTCAATGGGAAATACGCCCCGGCGTACCCAAAGTCCAACACCAAAAACAACCACCACCACCACCGTCACCGCCACCGCCACCACAAACTTGTGATTACGATCTTAGTCCTCTCAAACCGCCACCAGCCGGGTTCGTTTTCGTGCCTCTAGCGGAGCCACGGACCCGGTCGTTTCGTTTGGGTTCTGCAACCCGATCGCGTTCAGAGCGGTGGCGGTTTGAGCAGCCCAATATGCTGGCCCGGCGACCCGAGATTGTTTCGTCACCGGGGTGCTTCTTGTCTCCTCTGCTAAGGAGAAAGCTGATGAGCGGGAAAAAGGGGAAGAGTGGTGGTGGTGCAAGAACGGTACCCGAACCCGACTGCAGTTCTGACCTTGAAACACTGGCCCGGTGGTCGCTTTCTTCCCGGAAATCGCTGCTTTCGCCGTTCCGTGACTCACCGACGTCGATGTCGTCGAACTCGTCCTACCAGTCGTCCCCGCGACCCGTAAGCGACGCAGAGTGGGCCGGGTTCGGACTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.92

Weight (kDa)

9.89

Isoelectric Point (pI)

93.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32920
malus_domestica MD15G1067700.v1.1
prunus_persica Prupe.1G421600_v2.0.a1
pyrus_communis pycom08g06650 pycom15g06420
rosa_chinensis RchiOBHm_Chr6g0309801
rosa_laevigata RLG00000010535
rosa_multiflora Rmu_co8328543.1_g000001 Rmu_ssc0000373.1_g000006
rosa_roxburghii Rroxscaffold_7G00159170
rosa_rugosa Rorug06G0374700 Rorug06G0374800 Rorug06G0374900
rosa_samantha Rh6AG488200 Rh6BG497800 Rh6CG502600 Rh6DG488700
rosa_wichuraiana Rw6G042520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 493
AatII GACGTC 1 cut(s) 491
Acc65I GGTACC 1 cut(s) 391
AccB1I GGYRCC 1 cut(s) 391
AccBSI CCGCTC 2 cut(s) 253, 354
AccII CGCG 2 cut(s) 244, 526
AciI CCGC 8 cut(s) 116, 122, 164, 197, 253, 259, 354, 524
AcyI GRCGYC 1 cut(s) 488
AfaI GTAC 2 cut(s) 72, 393
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 2 cut(s) 50, 422
AjnI CCWGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 313
AluBI AGCT 2 cut(s) 38, 346
AluI AGCT 2 cut(s) 38, 346
Alw26I GTCTC 1 cut(s) 330
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 3 cut(s) 282, 429, 549
ApeKI GCWGC 2 cut(s) 268, 460
Asp718I GGTACC 1 cut(s) 391
AspS9I GGNCC 4 cut(s) 207, 283, 430, 549
AsuC2I CCSGG 8 cut(s) 66, 175, 211, 286, 312, 433, 451, 553
AsuHPI GGTGA 3 cut(s) 105, 300, 474
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 207
BanI GGYRCC 1 cut(s) 391
BbvI GCAGC 2 cut(s) 280, 447
BceAI ACGGC 1 cut(s) 454
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 1 cut(s) 33
BcnI CCSGG 8 cut(s) 66, 175, 211, 286, 312, 433, 451, 553
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 2 cut(s) 194, 568
BfmI CTRYAG 1 cut(s) 406
BisI GCNGC 2 cut(s) 269, 461
BlsI GCNGC 2 cut(s) 270, 462
Bme1390I CCNGG 9 cut(s) 33, 66, 175, 211, 286, 312, 433, 451, 553
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 4 cut(s) 207, 283, 430, 549
BmiI GGNNCC 3 cut(s) 201, 209, 393
BmrFI CCNGG 9 cut(s) 33, 66, 175, 211, 286, 312, 433, 451, 553
Bpu10I CCTNAGC 1 cut(s) 335
BpuMI CCSGG 8 cut(s) 66, 175, 211, 286, 312, 433, 451, 553
BsaBI GATNNNNATC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 64, 203, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 432, 514
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 3 cut(s) 64, 203, 311
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 432, 514
BseRI GAGGAG 1 cut(s) 318
BseXI GCAGC 2 cut(s) 280, 447
Bsh1236I CGCG 2 cut(s) 244, 526
Bsh1285I CGRYCG 2 cut(s) 215, 242
BshFI GGCC 3 cut(s) 284, 431, 551
BshNI GGYRCC 1 cut(s) 391
BsiEI CGRYCG 2 cut(s) 215, 242
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 8 cut(s) 66, 174, 211, 286, 311, 433, 451, 552
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 3 cut(s) 284, 431, 551
BsoBI CYCGRG 1 cut(s) 293
Bsp143I GATC 2 cut(s) 145, 239
BspACI CCGC 8 cut(s) 116, 122, 164, 197, 253, 259, 354, 524
BspANI GGCC 3 cut(s) 284, 431, 551
BspFNI CGCG 2 cut(s) 244, 526
BspLI GGNNCC 3 cut(s) 201, 209, 393
BspMAI CTGCAG 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 391
BsrBI CCGCTC 2 cut(s) 253, 354
BsrI ACTGG 2 cut(s) 432, 514
BssECI CCNNGG 3 cut(s) 64, 203, 311
BssMI GATC 2 cut(s) 145, 239
BssNI GRCGYC 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 111, 391
Bst6I CTCTTC 1 cut(s) 362
BstACI GRCGYC 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 149, 335
BstDSI CCRYGG 1 cut(s) 203
BstFNI CGCG 2 cut(s) 244, 526
BstKTI GATC 2 cut(s) 148, 242
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 2 cut(s) 145, 239
BstMCI CGRYCG 2 cut(s) 215, 242
BstMWI GCNNNNNNNGC 6 cut(s) 250, 265, 277, 286, 466, 548
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 9 cut(s) 31, 64, 173, 209, 284, 310, 431, 449, 551
BstSFI CTRYAG 1 cut(s) 406
BstUI CGCG 2 cut(s) 244, 526
BstV1I GCAGC 2 cut(s) 280, 447
BstXI CCANNNNNNTGG 2 cut(s) 51, 280
BsuRI GGCC 3 cut(s) 284, 431, 551
BtgI CCRYGG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 282
Cfr13I GGNCC 4 cut(s) 207, 283, 430, 549
CseI GACGC 1 cut(s) 548
Csp6I GTAC 2 cut(s) 71, 392
CviJI RGCY 8 cut(s) 38, 173, 202, 271, 284, 346, 431, 551
CviKI_1 RGCY 8 cut(s) 38, 173, 202, 271, 284, 346, 431, 551
CviQI GTAC 2 cut(s) 71, 392
DdeI CTNAG 2 cut(s) 149, 335
DpnI GATC 2 cut(s) 147, 241
DpnII GATC 2 cut(s) 145, 239
DrdI GACNNNNNNGTC 1 cut(s) 493
DseDI GACNNNNNNGTC 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 31
FaiI YATR 2 cut(s) 18, 278
FaqI GGGAC 1 cut(s) 505
FauI CCCGC 2 cut(s) 347, 531
Fnu4HI GCNGC 2 cut(s) 269, 461
Fsp4HI GCNGC 2 cut(s) 269, 461
FspBI CTAG 2 cut(s) 194, 568
GluI GCNGC 2 cut(s) 269, 461
HaeIII GGCC 3 cut(s) 284, 431, 551
HapII CCGG 8 cut(s) 66, 174, 211, 286, 311, 433, 451, 552
HgaI GACGC 1 cut(s) 548
Hin1I GRCGYC 1 cut(s) 488
HinfI GANTC 2 cut(s) 479, 561
HpaII CCGG 8 cut(s) 66, 174, 211, 286, 311, 433, 451, 552
HphI GGTGA 3 cut(s) 105, 300, 474
Hpy188I TCNGA 3 cut(s) 250, 415, 560
Hpy99I CGWCG 4 cut(s) 490, 493, 502, 542
HpyCH4III ACNGT 2 cut(s) 111, 391
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 3 cut(s) 233, 383, 408
HpyF10VI GCNNNNNNNGC 6 cut(s) 250, 265, 277, 286, 466, 548
HpyF3I CTNAG 2 cut(s) 149, 335
HpySE526I ACGT 1 cut(s) 488
Hsp92I GRCGYC 1 cut(s) 488
KpnI GGTACC 1 cut(s) 395
Kzo9I GATC 2 cut(s) 145, 239
LmnI GCTCC 2 cut(s) 35, 199
Lsp1109I GCAGC 2 cut(s) 280, 447
MaeI CTAG 2 cut(s) 194, 568
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 3 cut(s) 111, 306, 476
MalI GATC 2 cut(s) 147, 241
MbiI CCGCTC 2 cut(s) 253, 354
MboI GATC 2 cut(s) 145, 239
MboII GAAGA 3 cut(s) 379, 438, 556
MlyI GAGTC 2 cut(s) 473, 555
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 3 cut(s) 165, 201, 339
MslI CAYNNNNRTG 2 cut(s) 49, 313
MspI CCGG 8 cut(s) 66, 174, 211, 286, 311, 433, 451, 552
MspR9I CCNGG 9 cut(s) 33, 66, 175, 211, 286, 312, 433, 451, 553
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 2 cut(s) 244, 526
MwoI GCNNNNNNNGC 6 cut(s) 250, 265, 277, 286, 466, 548
NciI CCSGG 8 cut(s) 66, 175, 211, 286, 312, 433, 451, 553
NdeII GATC 2 cut(s) 145, 239
NlaIV GGNNCC 3 cut(s) 201, 209, 393
NmuCI GTSAC 3 cut(s) 111, 306, 476
OliI CACNNNNGTG 1 cut(s) 313
PcsI WCGNNNNNNNCGW 3 cut(s) 494, 497, 503
PflFI GACNNNGTC 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 449
PkrI GCNGC 2 cut(s) 270, 462
Ple19I CGATCG 1 cut(s) 242
PleI GAGTC 2 cut(s) 473, 555
PpsI GAGTC 2 cut(s) 473, 555
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 3 cut(s) 201, 209, 393
PspPI GGNCC 4 cut(s) 207, 283, 430, 549
PsrI GAACNNNNNNTAC 2 cut(s) 494, 526
PstI CTGCAG 1 cut(s) 410
PsyI GACNNNGTC 1 cut(s) 211
PvuI CGATCG 1 cut(s) 242
RsaI GTAC 2 cut(s) 72, 393
RsaNI GTAC 2 cut(s) 71, 392
RseI CAYNNNNRTG 2 cut(s) 49, 313
SatI GCNGC 2 cut(s) 269, 461
Sau3AI GATC 2 cut(s) 145, 239
Sau96I GGNCC 4 cut(s) 207, 283, 430, 549
SchI GAGTC 2 cut(s) 473, 555
ScrFI CCNGG 9 cut(s) 33, 66, 175, 211, 286, 312, 433, 451, 553
SetI ASST 4 cut(s) 40, 348, 420, 491
SfcI CTRYAG 1 cut(s) 406
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 49, 313
SsiI CCGC 8 cut(s) 116, 122, 164, 197, 253, 259, 354, 524
SspMI CTAG 2 cut(s) 194, 568
StyD4I CCNGG 9 cut(s) 31, 64, 173, 209, 284, 310, 431, 449, 551
TaaI ACNGT 2 cut(s) 111, 391
TaiI ACGT 1 cut(s) 491
TaqI TCGA 2 cut(s) 491, 500
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 3 cut(s) 111, 306, 476
TseI GCWGC 2 cut(s) 268, 460
Tsp45I GTSAC 3 cut(s) 111, 306, 476
TspGWI ACGGA 2 cut(s) 220, 464
TspRI CASTG 1 cut(s) 432
Tth111I GACNNNGTC 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 207
XspI CTAG 2 cut(s) 194, 568
ZraI GACGTC 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.