Rmu_ssc0000373.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000373.1
OG0013623
Physical Location & Seq
Reverse (-)
47178 .. 48674
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000373.1_g000006.1.cds

Sequence Viewer

Length: 1497 bp
atggagcctcctctgccggcgaactacgtcactctgctcgagctgaaggagcgttacctgaaagagaaggagcgggagcgaaaggagaaggaggaggaagaagaacggaagaagaaggaggaggagcgagaacgagaacaagcggagaaggaaaaggaggagcgagagcgaaaggggaactacgtcactctcctccagctcaaagagcggtacctgaaagagaaggagcgagagcaagcggagaaggatcgagcgcacaaggaggaagaagaggcgaaattgcggaagtttcggccggttgatcggagggagtttcggctggttgatcggagagagtttcggccggttgatcggagtgtttcggtgtgcgagggtggggagatagaggggaagagcgagaagccgccggaggaggaggagaagaggaagaagaagaagaagaagaataaaccgtggaagaagaatattagggcagagaacgaagaggtgaggagtgagaaggaaggtgtagtagttttggtggttcaagagagtagcgagaaggcaaataatggtttcagaacgaatggaggagaaaggagaagagctggtggtgttgagtttagggaaaagagcaagaatggggaggagattgaaccaaaagctaggaatttattgataaatggtgagactgaaatgggggatgataggttgaggaggccaaatagcaggaatgtgggtgcgaaagacgagattgagccgaaagttagggacttaaggatggatggtgagactgaaagaaggaatgataggtggaggaggtcaaatagcaggaatgtgggagccaaggaagagattgagccgaaaggtagggacttggggatgaatggtgagacggaaagagggaatgataggcggaggaggccaaatcgctggaatgggggtggcagggaggaaattgagccgaaagttagggacttttcgatgaatggtgagactgaaagagggagtgatgggctgaggggagcaaatagcaaggagcagagtgagccaaaagttagggatttatcaaagcatggtgagactgaaagaggggataggctgagggggccaaataacaaggaggagagtgagccaaaagttagggatttatcgaagcatggtgagactgaaagaagggataggctgaaagggccaaataggaaggaggagagtggaccaaaagttagggaattagcagtgactggcgagagtgaaggaggggaagatagattgtggaggccgaagggcaagaatgtgggtgggaaggatgagactgggctgaaagttatggactcatcagtgaaggctgagagtgaaggaggggatgaatggttgaggaggccaagtaggtctgattcccgtggtaatggaaaaactgggggttacaagaaagagaaacagagacagtgggctgtcctggcttgggtgaagaagggagaggtttctgatggcaatgttgctggagttcaaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

498

Amino Acids

57.98

Weight (kDa)

9.36

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32920
malus_domestica MD15G1067700.v1.1
prunus_persica Prupe.1G421600_v2.0.a1
pyrus_communis pycom08g06650 pycom15g06420
rosa_chinensis RchiOBHm_Chr6g0309801
rosa_laevigata RLG00000010535
rosa_multiflora Rmu_co8328543.1_g000001 Rmu_ssc0000373.1_g000006
rosa_roxburghii Rroxscaffold_7G00159170
rosa_rugosa Rorug06G0374700 Rorug06G0374800 Rorug06G0374900
rosa_samantha Rh6AG488200 Rh6BG497800 Rh6CG502600 Rh6DG488700
rosa_wichuraiana Rw6G042520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AccBSI CCGCTC 2 cut(s) 73, 208
AciI CCGC 7 cut(s) 73, 143, 208, 239, 283, 404, 895
AclWI GGATC 1 cut(s) 255
AcoI YGGCCR 2 cut(s) 293, 341
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 1444
AflII CTTAAG 1 cut(s) 754
AgsI TTSAA 3 cut(s) 527, 635, 1490
AjnI CCWGG 1 cut(s) 1437
AluBI AGCT 4 cut(s) 43, 199, 587, 644
AluI AGCT 4 cut(s) 43, 199, 587, 644
Alw26I GTCTC 8 cut(s) 662, 764, 866, 968, 1055, 1139, 1286, 1417
AlwI GGATC 1 cut(s) 255
AlwNI CAGNNNCTG 1 cut(s) 1223
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 8 cut(s) 293, 341, 698, 902, 1088, 1172, 1259, 1361
ApoI RAATTY 1 cut(s) 649
Asp718I GGTACC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 3 cut(s) 1088, 1172, 1196
AsuHPI GGTGA 8 cut(s) 499, 677, 779, 881, 983, 1070, 1154, 1459
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 1196
BanI GGYRCC 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BbvCI CCTCAGC 2 cut(s) 998, 1082
BccI CCATC 4 cut(s) 754, 758, 986, 1463
BciT130I CCWGG 1 cut(s) 1439
BcoDI GTCTC 8 cut(s) 662, 764, 866, 968, 1055, 1139, 1286, 1417
BfaI CTAG 1 cut(s) 645
BfrI CTTAAG 1 cut(s) 754
BisI GCNGC 1 cut(s) 404
BlsI GCNGC 1 cut(s) 405
Bme1390I CCNGG 1 cut(s) 1439
Bme18I GGWCC 1 cut(s) 1196
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 3 cut(s) 1088, 1172, 1196
BmiI GGNNCC 4 cut(s) 6, 212, 823, 1089
BmrFI CCNGG 1 cut(s) 1439
BmrI ACTGGG 2 cut(s) 1305, 1407
BmuI ACTGGG 2 cut(s) 1305, 1407
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 2 cut(s) 998, 1082
BsaJI CCNNGG 3 cut(s) 452, 825, 1381
BsaXI ACNNNNNCTCC 2 cut(s) 1351, 1381
Bsc4I CCNNNNNNNGG 1 cut(s) 1444
Bse118I RCCGGY 3 cut(s) 16, 295, 343
Bse1I ACTGG 3 cut(s) 1228, 1300, 1402
Bse3DI GCAATG 1 cut(s) 1480
BseBI CCWGG 1 cut(s) 1439
BseDI CCNNGG 3 cut(s) 452, 825, 1381
BseGI GGATG 6 cut(s) 688, 765, 769, 867, 1294, 1351
BseLI CCNNNNNNNGG 1 cut(s) 1444
BseMI GCAATG 1 cut(s) 1480
BseMII CTCAG 3 cut(s) 989, 1073, 1320
BseNI ACTGG 3 cut(s) 1228, 1300, 1402
BseX3I CGGCCG 2 cut(s) 293, 341
Bsh1285I CGRYCG 2 cut(s) 296, 344
BshFI GGCC 8 cut(s) 295, 343, 700, 904, 1090, 1174, 1261, 1363
BshNI GGYRCC 1 cut(s) 210
BsiEI CGRYCG 2 cut(s) 296, 344
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 4 cut(s) 17, 296, 344, 407
BslFI GGGAC 3 cut(s) 764, 866, 968
BslI CCNNNNNNNGG 1 cut(s) 1444
BsmAI GTCTC 8 cut(s) 662, 764, 866, 968, 1055, 1139, 1286, 1417
BsmBI CGTCTC 1 cut(s) 866
BsmFI GGGAC 3 cut(s) 764, 866, 968
BsnI GGCC 8 cut(s) 295, 343, 700, 904, 1090, 1174, 1261, 1363
BsoBI CYCGRG 1 cut(s) 38
Bsp143I GATC 4 cut(s) 247, 301, 325, 349
BspACI CCGC 7 cut(s) 73, 143, 208, 239, 283, 404, 895
BspANI GGCC 8 cut(s) 295, 343, 700, 904, 1090, 1174, 1261, 1363
BspCNI CTCAG 3 cut(s) 990, 1074, 1321
BspLI GGNNCC 4 cut(s) 6, 212, 823, 1089
BspPI GGATC 1 cut(s) 255
BspQI GCTCTTC 2 cut(s) 386, 577
BspT107I GGYRCC 1 cut(s) 210
BspTI CTTAAG 1 cut(s) 754
BsrBI CCGCTC 2 cut(s) 73, 208
BsrDI GCAATG 1 cut(s) 1480
BsrFI RCCGGY 3 cut(s) 16, 295, 343
BsrI ACTGG 3 cut(s) 1228, 1300, 1402
BssAI RCCGGY 3 cut(s) 16, 295, 343
BssECI CCNNGG 3 cut(s) 452, 825, 1381
BssMI GATC 4 cut(s) 247, 301, 325, 349
BssT1I CCWWGG 1 cut(s) 825
Bst2UI CCWGG 1 cut(s) 1439
Bst4CI ACNGT 2 cut(s) 453, 1428
Bst6I CTCTTC 6 cut(s) 264, 386, 416, 477, 577, 825
BstAFI CTTAAG 1 cut(s) 754
BstC8I GCNNGC 2 cut(s) 18, 237
BstDEI CTNAG 3 cut(s) 998, 1082, 1329
BstDSI CCRYGG 2 cut(s) 452, 1381
BstF5I GGATG 6 cut(s) 688, 765, 769, 867, 1294, 1351
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 4 cut(s) 250, 304, 328, 352
BstMAI GTCTC 8 cut(s) 662, 764, 866, 968, 1055, 1139, 1286, 1417
BstMBI GATC 4 cut(s) 247, 301, 325, 349
BstMCI CGRYCG 2 cut(s) 296, 344
BstMWI GCNNNNNNNGC 8 cut(s) 13, 49, 205, 901, 1027, 1087, 1171, 1439
BstNI CCWGG 1 cut(s) 1439
BstSCI CCNGG 1 cut(s) 1437
BstXI CCANNNNNNTGG 1 cut(s) 912
BstZI CGGCCG 2 cut(s) 293, 341
BsuRI GGCC 8 cut(s) 295, 343, 700, 904, 1090, 1174, 1261, 1363
BtgI CCRYGG 2 cut(s) 452, 1381
BtsCI GGATG 6 cut(s) 688, 765, 769, 867, 1294, 1351
BtsI GCAGTG 1 cut(s) 1224
BtsIMutI CAGTG 3 cut(s) 1224, 1326, 1433
Cac8I GCNNGC 2 cut(s) 18, 237
CaiI CAGNNNCTG 1 cut(s) 1223
CfoI GCGC 1 cut(s) 256
Cfr10I RCCGGY 3 cut(s) 16, 295, 343
Cfr13I GGNCC 3 cut(s) 1088, 1172, 1196
Csp6I GTAC 1 cut(s) 211
CviAII CATG 2 cut(s) 1055, 1139
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 3 cut(s) 998, 1082, 1329
DpnI GATC 4 cut(s) 249, 303, 327, 351
DpnII GATC 4 cut(s) 247, 301, 325, 349
EaeI YGGCCR 2 cut(s) 293, 341
EagI CGGCCG 2 cut(s) 293, 341
Eam1104I CTCTTC 6 cut(s) 264, 386, 416, 477, 577, 825
EarI CTCTTC 6 cut(s) 264, 386, 416, 477, 577, 825
EciI GGCGGA 1 cut(s) 910
EclXI CGGCCG 2 cut(s) 293, 341
Eco130I CCWWGG 1 cut(s) 825
Eco47I GGWCC 1 cut(s) 1196
Eco52I CGGCCG 2 cut(s) 293, 341
Eco57I CTGAAG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 1437
EcoT14I CCWWGG 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 825
Esp3I CGTCTC 1 cut(s) 866
FaeI CATG 2 cut(s) 1058, 1142
FaiI YATR 3 cut(s) 1056, 1140, 1310
FaqI GGGAC 3 cut(s) 764, 866, 968
FatI CATG 2 cut(s) 1054, 1138
FauI CCCGC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 404
FokI GGATG 6 cut(s) 695, 772, 776, 874, 1301, 1358
Fsp4HI GCNGC 1 cut(s) 404
FspBI CTAG 1 cut(s) 645
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 404
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 8 cut(s) 295, 343, 700, 904, 1090, 1174, 1261, 1363
HapII CCGG 4 cut(s) 17, 296, 344, 407
HhaI GCGC 1 cut(s) 256
Hin1II CATG 2 cut(s) 1058, 1142
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 2 cut(s) 1313, 1376
HpaII CCGG 4 cut(s) 17, 296, 344, 407
HphI GGTGA 8 cut(s) 499, 677, 779, 881, 983, 1070, 1154, 1459
Hpy166II GTNNAC 1 cut(s) 1196
Hpy188I TCNGA 6 cut(s) 306, 330, 354, 560, 1375, 1468
Hpy188III TCNNGA 1 cut(s) 527
Hpy8I GTNNAC 1 cut(s) 1196
HpyCH4III ACNGT 2 cut(s) 453, 1428
HpyCH4IV ACGT 2 cut(s) 27, 183
HpyF10VI GCNNNNNNNGC 8 cut(s) 13, 49, 205, 901, 1027, 1087, 1171, 1439
HpyF3I CTNAG 3 cut(s) 998, 1082, 1329
HpySE526I ACGT 2 cut(s) 27, 183
Hsp92II CATG 2 cut(s) 1058, 1142
HspAI GCGC 1 cut(s) 254
KpnI GGTACC 1 cut(s) 214
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Kzo9I GATC 4 cut(s) 247, 301, 325, 349
LguI GCTCTTC 2 cut(s) 386, 577
MaeI CTAG 1 cut(s) 645
MaeII ACGT 2 cut(s) 27, 183
MaeIII GTNAC 5 cut(s) 28, 53, 184, 1219, 1403
MalI GATC 4 cut(s) 249, 303, 327, 351
MbiI CCGCTC 2 cut(s) 73, 208
MboI GATC 4 cut(s) 247, 301, 325, 349
MluCI AATT 4 cut(s) 278, 649, 936, 1211
MlyI GAGTC 1 cut(s) 1307
MroNI GCCGGC 1 cut(s) 16
MseI TTAA 1 cut(s) 755
MspCI CTTAAG 1 cut(s) 754
MspI CCGG 4 cut(s) 17, 296, 344, 407
MspR9I CCNGG 1 cut(s) 1439
MvaI CCWGG 1 cut(s) 1439
MwoI GCNNNNNNNGC 8 cut(s) 13, 49, 205, 901, 1027, 1087, 1171, 1439
NaeI GCCGGC 1 cut(s) 18
NdeII GATC 4 cut(s) 247, 301, 325, 349
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 2 cut(s) 1058, 1142
NlaIV GGNNCC 4 cut(s) 6, 212, 823, 1089
NmuCI GTSAC 3 cut(s) 28, 184, 1219
PaeR7I CTCGAG 1 cut(s) 38
PciSI GCTCTTC 2 cut(s) 386, 577
PdiI GCCGGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 1376
PkrI GCNGC 1 cut(s) 405
PleI GAGTC 1 cut(s) 1307
PpsI GAGTC 1 cut(s) 1307
Psp6I CCWGG 1 cut(s) 1437
PspGI CCWGG 1 cut(s) 1437
PspN4I GGNNCC 4 cut(s) 6, 212, 823, 1089
PspPI GGNCC 3 cut(s) 1088, 1172, 1196
PspXI VCTCGAGB 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 1223
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SapI GCTCTTC 2 cut(s) 386, 577
SaqAI TTAA 1 cut(s) 755
SatI GCNGC 1 cut(s) 404
Sau3AI GATC 4 cut(s) 247, 301, 325, 349
Sau96I GGNCC 3 cut(s) 1088, 1172, 1196
SchI GAGTC 1 cut(s) 1307
ScrFI CCNGG 1 cut(s) 1439
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 1 cut(s) 1196
SlaI CTCGAG 1 cut(s) 38
SmlI CTYRAG 2 cut(s) 38, 754
SmoI CTYRAG 2 cut(s) 38, 754
Sse9I AATT 4 cut(s) 278, 649, 936, 1211
SsiI CCGC 7 cut(s) 73, 143, 208, 239, 283, 404, 895
SspI AATATT 1 cut(s) 466
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 1 cut(s) 1437
StyI CCWWGG 1 cut(s) 825
TaaI ACNGT 2 cut(s) 453, 1428
TaiI ACGT 2 cut(s) 30, 186
TaqI TCGA 4 cut(s) 39, 250, 962, 1133
TasI AATT 4 cut(s) 278, 649, 936, 1211
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 1 cut(s) 1376
Tru1I TTAA 1 cut(s) 755
Tru9I TTAA 1 cut(s) 755
TscAI CASTG 3 cut(s) 1224, 1326, 1433
TseFI GTSAC 3 cut(s) 28, 184, 1219
Tsp45I GTSAC 3 cut(s) 28, 184, 1219
TspDTI ATGAA 3 cut(s) 878, 980, 1362
TspGWI ACGGA 2 cut(s) 121, 890
TspRI CASTG 3 cut(s) 1224, 1326, 1433
Vha464I CTTAAG 1 cut(s) 754
VpaK11BI GGWCC 1 cut(s) 1196
XapI RAATTY 1 cut(s) 649
XhoI CTCGAG 1 cut(s) 38
XspI CTAG 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.