No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g32920 |
| malus_domestica | MD15G1067700.v1.1 |
| prunus_persica | Prupe.1G421600_v2.0.a1 |
| pyrus_communis | pycom08g06650 pycom15g06420 |
| rosa_chinensis | RchiOBHm_Chr6g0309801 |
| rosa_laevigata | RLG00000010535 |
| rosa_multiflora | Rmu_co8328543.1_g000001 Rmu_ssc0000373.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00159170 |
| rosa_rugosa | Rorug06G0374700 Rorug06G0374800 Rorug06G0374900 |
| rosa_samantha | Rh6AG488200 Rh6BG497800 Rh6CG502600 Rh6DG488700 |
| rosa_wichuraiana | Rw6G042520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1572 |
| Acc65I | GGTACC | 1 cut(s) | 54 |
| AccB1I | GGYRCC | 2 cut(s) | 54, 971 |
| AccBSI | CCGCTC | 2 cut(s) | 52, 202 |
| AciI | CCGC | 7 cut(s) | 52, 122, 202, 233, 277, 449, 841 |
| AclWI | GGATC | 2 cut(s) | 138, 249 |
| AcoI | YGGCCR | 3 cut(s) | 338, 362, 386 |
| AcsI | RAATTY | 1 cut(s) | 697 |
| AcuI | CTGAAG | 1 cut(s) | 65 |
| AcyI | GRCGYC | 1 cut(s) | 291 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 959, 1657 |
| AflII | CTTAAG | 1 cut(s) | 802 |
| AgsI | TTSAA | 3 cut(s) | 575, 683, 1703 |
| AjnI | CCWGG | 2 cut(s) | 974, 1650 |
| AluBI | AGCT | 3 cut(s) | 43, 193, 635 |
| AluI | AGCT | 3 cut(s) | 43, 193, 635 |
| AlwI | GGATC | 2 cut(s) | 138, 249 |
| ApoI | RAATTY | 1 cut(s) | 697 |
| Asp718I | GGTACC | 1 cut(s) | 54 |
| AspLEI | GCGC | 2 cut(s) | 139, 250 |
| AspS9I | GGNCC | 6 cut(s) | 37, 1052, 1136, 1301, 1385, 1409 |
| AvaII | GGWCC | 2 cut(s) | 37, 1409 |
| BanI | GGYRCC | 2 cut(s) | 54, 971 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 38, 70 |
| BbvCI | CCTCAGC | 4 cut(s) | 1046, 1130, 1214, 1295 |
| BccI | CCATC | 4 cut(s) | 802, 806, 1034, 1676 |
| BceAI | ACGGC | 1 cut(s) | 304 |
| BciT130I | CCWGG | 2 cut(s) | 976, 1652 |
| BfrI | CTTAAG | 1 cut(s) | 802 |
| BfuAI | ACCTGC | 1 cut(s) | 1572 |
| BisI | GCNGC | 1 cut(s) | 449 |
| BlsI | GCNGC | 1 cut(s) | 450 |
| Bme1390I | CCNGG | 2 cut(s) | 976, 1652 |
| Bme18I | GGWCC | 2 cut(s) | 37, 1409 |
| BmgT120I | GGNCC | 6 cut(s) | 37, 1052, 1136, 1301, 1385, 1409 |
| BmiI | GGNNCC | 8 cut(s) | 6, 56, 206, 871, 973, 1053, 1137, 1302 |
| BmrFI | CCNGG | 2 cut(s) | 976, 1652 |
| BmrI | ACTGGG | 2 cut(s) | 1518, 1620 |
| BmuI | ACTGGG | 2 cut(s) | 1518, 1620 |
| BpmI | CTGGAG | 1 cut(s) | 173 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1046, 1130, 1214, 1295 |
| BsaHI | GRCGYC | 1 cut(s) | 291 |
| BsaJI | CCNNGG | 2 cut(s) | 873, 975 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1226, 1256 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 959, 1657 |
| Bse118I | RCCGGY | 4 cut(s) | 16, 340, 364, 388 |
| Bse1I | ACTGG | 3 cut(s) | 1441, 1513, 1615 |
| Bse3DI | GCAATG | 1 cut(s) | 1693 |
| BseBI | CCWGG | 2 cut(s) | 976, 1652 |
| BseDI | CCNNGG | 2 cut(s) | 873, 975 |
| BseGI | GGATG | 6 cut(s) | 736, 813, 817, 915, 1507, 1564 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 959, 1657 |
| BseMI | GCAATG | 1 cut(s) | 1693 |
| BseMII | CTCAG | 5 cut(s) | 1037, 1121, 1205, 1286, 1533 |
| BseNI | ACTGG | 3 cut(s) | 1441, 1513, 1615 |
| BseX3I | CGGCCG | 3 cut(s) | 338, 362, 386 |
| Bsh1285I | CGRYCG | 3 cut(s) | 341, 365, 389 |
| BshNI | GGYRCC | 2 cut(s) | 54, 971 |
| BsiEI | CGRYCG | 3 cut(s) | 341, 365, 389 |
| BsiSI | CCGG | 5 cut(s) | 17, 341, 365, 389, 452 |
| BslFI | GGGAC | 3 cut(s) | 812, 914, 1016 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 959, 1657 |
| BsmBI | CGTCTC | 1 cut(s) | 914 |
| BsmFI | GGGAC | 3 cut(s) | 812, 914, 1016 |
| Bsp143I | GATC | 6 cut(s) | 130, 241, 322, 346, 370, 394 |
| BspACI | CCGC | 7 cut(s) | 52, 122, 202, 233, 277, 449, 841 |
| BspCNI | CTCAG | 5 cut(s) | 1038, 1122, 1206, 1287, 1534 |
| BspLI | GGNNCC | 8 cut(s) | 6, 56, 206, 871, 973, 1053, 1137, 1302 |
| BspMI | ACCTGC | 1 cut(s) | 1572 |
| BspPI | GGATC | 2 cut(s) | 138, 249 |
| BspQI | GCTCTTC | 2 cut(s) | 431, 625 |
| BspT107I | GGYRCC | 2 cut(s) | 54, 971 |
| BspTI | CTTAAG | 1 cut(s) | 802 |
| BsrBI | CCGCTC | 2 cut(s) | 52, 202 |
| BsrDI | GCAATG | 1 cut(s) | 1693 |
| BsrFI | RCCGGY | 4 cut(s) | 16, 340, 364, 388 |
| BsrI | ACTGG | 3 cut(s) | 1441, 1513, 1615 |
| BssAI | RCCGGY | 4 cut(s) | 16, 340, 364, 388 |
| BssECI | CCNNGG | 2 cut(s) | 873, 975 |
| BssMI | GATC | 6 cut(s) | 130, 241, 322, 346, 370, 394 |
| BssNI | GRCGYC | 1 cut(s) | 291 |
| BssT1I | CCWWGG | 1 cut(s) | 873 |
| Bst2UI | CCWGG | 2 cut(s) | 976, 1652 |
| Bst4CI | ACNGT | 4 cut(s) | 501, 1019, 1595, 1641 |
| Bst6I | CTCTTC | 5 cut(s) | 141, 258, 431, 625, 873 |
| BstACI | GRCGYC | 1 cut(s) | 291 |
| BstAFI | CTTAAG | 1 cut(s) | 802 |
| BstC8I | GCNNGC | 3 cut(s) | 18, 231, 1648 |
| BstDEI | CTNAG | 6 cut(s) | 794, 1046, 1130, 1214, 1295, 1542 |
| BstF5I | GGATG | 6 cut(s) | 736, 813, 817, 915, 1507, 1564 |
| BstHHI | GCGC | 2 cut(s) | 139, 250 |
| BstKTI | GATC | 6 cut(s) | 133, 244, 325, 349, 373, 397 |
| BstMBI | GATC | 6 cut(s) | 130, 241, 322, 346, 370, 394 |
| BstMCI | CGRYCG | 3 cut(s) | 341, 365, 389 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 13, 49, 199, 949, 1051, 1135, 1300, 1384, 1652 |
| BstNI | CCWGG | 2 cut(s) | 976, 1652 |
| BstSCI | CCNGG | 2 cut(s) | 974, 1650 |
| BstZI | CGGCCG | 3 cut(s) | 338, 362, 386 |
| BtsCI | GGATG | 6 cut(s) | 736, 813, 817, 915, 1507, 1564 |
| BtsIMutI | CAGTG | 3 cut(s) | 506, 1539, 1646 |
| BveI | ACCTGC | 1 cut(s) | 1572 |
| Cac8I | GCNNGC | 3 cut(s) | 18, 231, 1648 |
| CfoI | GCGC | 2 cut(s) | 139, 250 |
| Cfr10I | RCCGGY | 4 cut(s) | 16, 340, 364, 388 |
| Cfr13I | GGNCC | 6 cut(s) | 37, 1052, 1136, 1301, 1385, 1409 |
| CseI | GACGC | 1 cut(s) | 280 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CviAII | CATG | 4 cut(s) | 1103, 1187, 1268, 1352 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 6 cut(s) | 794, 1046, 1130, 1214, 1295, 1542 |
| DpnI | GATC | 6 cut(s) | 132, 243, 324, 348, 372, 396 |
| DpnII | GATC | 6 cut(s) | 130, 241, 322, 346, 370, 394 |
| EaeI | YGGCCR | 3 cut(s) | 338, 362, 386 |
| EagI | CGGCCG | 3 cut(s) | 338, 362, 386 |
| Eam1104I | CTCTTC | 5 cut(s) | 141, 258, 431, 625, 873 |
| EarI | CTCTTC | 5 cut(s) | 141, 258, 431, 625, 873 |
| EciI | GGCGGA | 1 cut(s) | 856 |
| EclXI | CGGCCG | 3 cut(s) | 338, 362, 386 |
| Eco130I | CCWWGG | 1 cut(s) | 873 |
| Eco47I | GGWCC | 2 cut(s) | 37, 1409 |
| Eco52I | CGGCCG | 3 cut(s) | 338, 362, 386 |
| Eco57I | CTGAAG | 1 cut(s) | 65 |
| EcoRII | CCWGG | 2 cut(s) | 974, 1650 |
| EcoT14I | CCWWGG | 1 cut(s) | 873 |
| ErhI | CCWWGG | 1 cut(s) | 873 |
| Esp3I | CGTCTC | 1 cut(s) | 914 |
| FaeI | CATG | 4 cut(s) | 1106, 1190, 1271, 1355 |
| FaiI | YATR | 7 cut(s) | 753, 1104, 1188, 1269, 1353, 1523, 1587 |
| FaqI | GGGAC | 3 cut(s) | 812, 914, 1016 |
| FatI | CATG | 4 cut(s) | 1102, 1186, 1267, 1351 |
| Fnu4HI | GCNGC | 1 cut(s) | 449 |
| FokI | GGATG | 6 cut(s) | 743, 820, 824, 922, 1514, 1571 |
| Fsp4HI | GCNGC | 1 cut(s) | 449 |
| GlaI | GCGC | 2 cut(s) | 138, 249 |
| GluI | GCNGC | 1 cut(s) | 449 |
| GsuI | CTGGAG | 1 cut(s) | 173 |
| HapII | CCGG | 5 cut(s) | 17, 341, 365, 389, 452 |
| HgaI | GACGC | 1 cut(s) | 280 |
| HhaI | GCGC | 2 cut(s) | 139, 250 |
| Hin1I | GRCGYC | 1 cut(s) | 291 |
| Hin1II | CATG | 4 cut(s) | 1106, 1190, 1271, 1355 |
| Hin6I | GCGC | 2 cut(s) | 137, 248 |
| HinP1I | GCGC | 2 cut(s) | 137, 248 |
| HinfI | GANTC | 2 cut(s) | 1241, 1526 |
| HpaII | CCGG | 5 cut(s) | 17, 341, 365, 389, 452 |
| Hpy166II | GTNNAC | 1 cut(s) | 1409 |
| Hpy188I | TCNGA | 6 cut(s) | 327, 351, 375, 399, 608, 1681 |
| Hpy188III | TCNNGA | 2 cut(s) | 208, 575 |
| Hpy8I | GTNNAC | 1 cut(s) | 1409 |
| Hpy99I | CGWCG | 1 cut(s) | 296 |
| HpyCH4III | ACNGT | 4 cut(s) | 501, 1019, 1595, 1641 |
| HpyCH4IV | ACGT | 2 cut(s) | 27, 177 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 13, 49, 199, 949, 1051, 1135, 1300, 1384, 1652 |
| HpyF3I | CTNAG | 6 cut(s) | 794, 1046, 1130, 1214, 1295, 1542 |
| HpySE526I | ACGT | 2 cut(s) | 27, 177 |
| Hsp92I | GRCGYC | 1 cut(s) | 291 |
| Hsp92II | CATG | 4 cut(s) | 1106, 1190, 1271, 1355 |
| HspAI | GCGC | 2 cut(s) | 137, 248 |
| KpnI | GGTACC | 1 cut(s) | 58 |
| KroI | GCCGGC | 1 cut(s) | 16 |
| KroNI | GCCGGC | 1 cut(s) | 18 |
| Kzo9I | GATC | 6 cut(s) | 130, 241, 322, 346, 370, 394 |
| LguI | GCTCTTC | 2 cut(s) | 431, 625 |
| LmnI | GCTCC | 6 cut(s) | 4, 49, 103, 154, 220, 869 |
| MaeII | ACGT | 2 cut(s) | 27, 177 |
| MaeIII | GTNAC | 4 cut(s) | 28, 178, 1432, 1616 |
| MalI | GATC | 6 cut(s) | 132, 243, 324, 348, 372, 396 |
| MbiI | CCGCTC | 2 cut(s) | 52, 202 |
| MboI | GATC | 6 cut(s) | 130, 241, 322, 346, 370, 394 |
| MluCI | AATT | 4 cut(s) | 272, 307, 697, 1424 |
| MlyI | GAGTC | 2 cut(s) | 1250, 1520 |
| MroNI | GCCGGC | 1 cut(s) | 16 |
| MseI | TTAA | 1 cut(s) | 803 |
| MslI | CAYNNNNRTG | 1 cut(s) | 963 |
| MspA1I | CMGCKG | 1 cut(s) | 43 |
| MspCI | CTTAAG | 1 cut(s) | 802 |
| MspI | CCGG | 5 cut(s) | 17, 341, 365, 389, 452 |
| MspR9I | CCNGG | 2 cut(s) | 976, 1652 |
| MvaI | CCWGG | 2 cut(s) | 976, 1652 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 13, 49, 199, 949, 1051, 1135, 1300, 1384, 1652 |
| NaeI | GCCGGC | 1 cut(s) | 18 |
| NdeII | GATC | 6 cut(s) | 130, 241, 322, 346, 370, 394 |
| NgoMIV | GCCGGC | 1 cut(s) | 16 |
| NlaIII | CATG | 4 cut(s) | 1106, 1190, 1271, 1355 |
| NlaIV | GGNNCC | 8 cut(s) | 6, 56, 206, 871, 973, 1053, 1137, 1302 |
| NmuCI | GTSAC | 3 cut(s) | 28, 178, 1432 |
| PciSI | GCTCTTC | 2 cut(s) | 431, 625 |
| PdiI | GCCGGC | 1 cut(s) | 18 |
| PflFI | GACNNNGTC | 1 cut(s) | 290 |
| PkrI | GCNGC | 1 cut(s) | 450 |
| PleI | GAGTC | 2 cut(s) | 1249, 1520 |
| PpsI | GAGTC | 2 cut(s) | 1249, 1520 |
| Psp6I | CCWGG | 2 cut(s) | 974, 1650 |
| PspGI | CCWGG | 2 cut(s) | 974, 1650 |
| PspN4I | GGNNCC | 8 cut(s) | 6, 56, 206, 871, 973, 1053, 1137, 1302 |
| PspPI | GGNCC | 6 cut(s) | 37, 1052, 1136, 1301, 1385, 1409 |
| PsyI | GACNNNGTC | 1 cut(s) | 290 |
| PvuII | CAGCTG | 1 cut(s) | 43 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| RseI | CAYNNNNRTG | 1 cut(s) | 963 |
| SapI | GCTCTTC | 2 cut(s) | 431, 625 |
| SaqAI | TTAA | 1 cut(s) | 803 |
| SatI | GCNGC | 1 cut(s) | 449 |
| Sau3AI | GATC | 6 cut(s) | 130, 241, 322, 346, 370, 394 |
| Sau96I | GGNCC | 6 cut(s) | 37, 1052, 1136, 1301, 1385, 1409 |
| SchI | GAGTC | 2 cut(s) | 1250, 1520 |
| ScrFI | CCNGG | 2 cut(s) | 976, 1652 |
| SinI | GGWCC | 2 cut(s) | 37, 1409 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 963 |
| SmlI | CTYRAG | 1 cut(s) | 802 |
| SmoI | CTYRAG | 1 cut(s) | 802 |
| Sse9I | AATT | 4 cut(s) | 272, 307, 697, 1424 |
| SsiI | CCGC | 7 cut(s) | 52, 122, 202, 233, 277, 449, 841 |
| SspI | AATATT | 1 cut(s) | 514 |
| StyD4I | CCNGG | 2 cut(s) | 974, 1650 |
| StyI | CCWWGG | 1 cut(s) | 873 |
| TaaI | ACNGT | 4 cut(s) | 501, 1019, 1595, 1641 |
| TaiI | ACGT | 2 cut(s) | 30, 180 |
| TaqI | TCGA | 6 cut(s) | 133, 244, 1010, 1097, 1181, 1262 |
| TasI | AATT | 4 cut(s) | 272, 307, 697, 1424 |
| TauI | GCSGC | 1 cut(s) | 451 |
| Tru1I | TTAA | 1 cut(s) | 803 |
| Tru9I | TTAA | 1 cut(s) | 803 |
| TscAI | CASTG | 3 cut(s) | 506, 1539, 1646 |
| TseFI | GTSAC | 3 cut(s) | 28, 178, 1432 |
| Tsp45I | GTSAC | 3 cut(s) | 28, 178, 1432 |
| TspDTI | ATGAA | 3 cut(s) | 926, 1028, 1575 |
| TspGWI | ACGGA | 2 cut(s) | 100, 938 |
| TspRI | CASTG | 3 cut(s) | 506, 1539, 1646 |
| Tth111I | GACNNNGTC | 1 cut(s) | 290 |
| Vha464I | CTTAAG | 1 cut(s) | 802 |
| VpaK11BI | GGWCC | 2 cut(s) | 37, 1409 |
| XapI | RAATTY | 1 cut(s) | 697 |