Rorug06G0374800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013623
Physical Location & Seq
Reverse (-)
52133059 .. 52134031
973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0374800.1

Sequence Viewer

Length: 882 bp
ATGAAATGCCTAGGAGAAGAGGGGTTGGTTAATGAAGCATTGGCGGCTTTCTATAGAATGAAACAGTATCATTGCAAACCGGATGTGTATGCATATAACACAATTATTTACGCTCTTTGTAGAATTGGGAATTTTAAGAAGGCCCGGTTTTTGCTGGAGCAAATGAAGTTGCCCGGGTTTAGATGCCCGCCGGATACATTTACTTACACGATTTTGTTCAGCTCTTATTGTAGATATGGGTTGGAGACTGGGTGTAGGAAAGCTACTAGGAGGCGGTTGTGGGAAGCAAACCACATGTTTCGGAATATGCTCTTTAGAGGGTTTGTTCCTGATGTTGTCACTTACAACGCTTTGATCAATGGTTGTTGCAAGACTTACAGGATAGAGAGGGCGTTGAAGTTGTTTGAGGATATGAAGAAGAGGGATTGTACCCCCAACCGTGTTACTAATGATTCGTTTATTAGATACTATGCTGCTGTTAATGAGATTGATAAGGTTGTTGATATCCATGATTGCGAAATCAAGCTCTGTAGCTATGGCTTCAGCTCTTATTGTAGATATGGGTTGGAGACTGGCTTCAGCTCTTATTGTAGATATGGGTTGGAGACTGGGTGTAGGAAAGCTACTAGGAGGCGGTTGTGGGAAGCAAACCACATGTTTCGGAATATGCTCTTTAGAGGGTTTGTTCCTGATGTTGTCACTTACAACGCTTTGATCAATGGTTGTTGCAAGACTTACAGGATAGAGAGGGCGTTGAAGTTGTTTGAGGATATGAAGAAGAGGGATTGTACCCCCAACCGTGTTACTAATGATTCGTTTATTAGATACTATGCTGCTGTTAATGAGATTGATAAGGTTGTTGATATGTTAAGAATGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

34.64

Weight (kDa)

9.25

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 1 - 41 7.1e-08 PPR repeat family
PPR_1 PF12854 24 - 56 2.2e-09 PPR repeat
PPR_2 PF13041 27 - 78 1.9e-13 PPR repeat family
PPR_2 PF13041 91 - 124 1.1e-08 PPR repeat family
PPR_3 PF13812 99 - 157 1.5e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 106 - 139 1.7e-12 PPR repeat
PPR_2 PF13041 110 - 155 2.3e-16 PPR repeat family
PPR PF01535 113 - 143 9.2e-10 PPR repeat
PPR_2 PF13041 211 - 244 1.1e-08 PPR repeat family
PPR_3 PF13812 219 - 277 1.5e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 226 - 259 1.7e-12 PPR repeat
PPR_2 PF13041 230 - 272 3.4e-16 PPR repeat family
PPR PF01535 233 - 263 9.2e-10 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32920
malus_domestica MD15G1067700.v1.1
prunus_persica Prupe.1G421600_v2.0.a1
pyrus_communis pycom08g06650 pycom15g06420
rosa_chinensis RchiOBHm_Chr6g0309801
rosa_laevigata RLG00000010535
rosa_multiflora Rmu_co8328543.1_g000001 Rmu_ssc0000373.1_g000006
rosa_roxburghii Rroxscaffold_7G00159170
rosa_rugosa Rorug06G0374700 Rorug06G0374800 Rorug06G0374900
rosa_samantha Rh6AG488200 Rh6BG497800 Rh6CG502600 Rh6DG488700
rosa_wichuraiana Rw6G042520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 44, 188, 274, 634
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 2 cut(s) 526, 562
AfaI GTAC 2 cut(s) 430, 790
AflIII ACRYGT 2 cut(s) 294, 654
AgsI TTSAA 2 cut(s) 397, 757
AluBI AGCT 7 cut(s) 222, 263, 526, 534, 546, 582, 623
AluI AGCT 7 cut(s) 222, 263, 526, 534, 546, 582, 623
Alw26I GTCTC 3 cut(s) 239, 563, 599
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 473, 833
ApoI RAATTY 1 cut(s) 130
AspA2I CCTAGG 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 3 cut(s) 145, 174, 175
AvaI CYCGRG 1 cut(s) 173
AvrII CCTAGG 1 cut(s) 10
BbvI GCAGC 2 cut(s) 460, 820
BciVI GTATCC 1 cut(s) 187
BclI TGATCA 2 cut(s) 354, 714
BcnI CCSGG 3 cut(s) 145, 174, 175
BcoDI GTCTC 3 cut(s) 239, 563, 599
BfaI CTAG 3 cut(s) 11, 267, 627
BfmI CTRYAG 2 cut(s) 52, 529
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 3 cut(s) 45, 474, 834
BlnI CCTAGG 1 cut(s) 10
BlsI GCNGC 3 cut(s) 46, 475, 835
Bme1390I CCNGG 3 cut(s) 145, 174, 175
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 142
BmrFI CCNGG 3 cut(s) 145, 174, 175
BmrI ACTGGG 2 cut(s) 258, 618
BmsI GCATC 1 cut(s) 173
BmuI ACTGGG 2 cut(s) 258, 618
BpmI CTGGAG 1 cut(s) 176
BpuMI CCSGG 3 cut(s) 145, 174, 175
BsaJI CCNNGG 2 cut(s) 10, 173
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 4 cut(s) 236, 266, 596, 626
Bse1I ACTGG 3 cut(s) 253, 577, 613
Bse3DI GCAATG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 10, 173
BseGI GGATG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 3 cut(s) 253, 577, 613
BseXI GCAGC 2 cut(s) 460, 820
BshFI GGCC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 4 cut(s) 80, 145, 174, 191
BsmAI GTCTC 3 cut(s) 239, 563, 599
BsnI GGCC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 173
Bsp143I GATC 2 cut(s) 354, 714
BspACI CCGC 4 cut(s) 44, 188, 274, 634
BspANI GGCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 3 cut(s) 253, 577, 613
BssECI CCNNGG 2 cut(s) 10, 173
BssMI GATC 2 cut(s) 354, 714
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 3 cut(s) 66, 440, 800
Bst6I CTCTTC 3 cut(s) 12, 413, 773
BstC8I GCNNGC 1 cut(s) 188
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 2 cut(s) 357, 717
BstMAI GTCTC 3 cut(s) 239, 563, 599
BstMBI GATC 2 cut(s) 354, 714
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 2 cut(s) 298, 658
BstSCI CCNGG 3 cut(s) 143, 172, 173
BstSFI CTRYAG 2 cut(s) 52, 529
BstV1I GCAGC 2 cut(s) 460, 820
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 142
Cfr9I CCCGGG 1 cut(s) 173
Csp6I GTAC 2 cut(s) 429, 789
CviAII CATG 3 cut(s) 295, 509, 655
CviQI GTAC 2 cut(s) 429, 789
DpnI GATC 2 cut(s) 356, 716
DpnII GATC 2 cut(s) 354, 714
Eam1104I CTCTTC 3 cut(s) 12, 413, 773
EarI CTCTTC 3 cut(s) 12, 413, 773
Eco130I CCWWGG 1 cut(s) 10
Eco32I GATATC 1 cut(s) 505
Eco57I CTGAAG 2 cut(s) 526, 562
Eco88I CYCGRG 1 cut(s) 173
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 10
EcoT22I ATGCAT 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 3 cut(s) 298, 512, 658
FatI CATG 3 cut(s) 294, 508, 654
FauI CCCGC 1 cut(s) 195
FbaI TGATCA 2 cut(s) 354, 714
Fnu4HI GCNGC 3 cut(s) 45, 474, 834
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 45, 474, 834
FspBI CTAG 3 cut(s) 11, 267, 627
GluI GCNGC 3 cut(s) 45, 474, 834
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 143
HapII CCGG 4 cut(s) 80, 145, 174, 191
Hin1II CATG 3 cut(s) 298, 512, 658
HinfI GANTC 2 cut(s) 452, 812
HpaII CCGG 4 cut(s) 80, 145, 174, 191
Hpy188I TCNGA 2 cut(s) 303, 663
Hpy188III TCNNGA 2 cut(s) 329, 689
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 3 cut(s) 66, 440, 800
HpyCH4V TGCA 4 cut(s) 75, 92, 369, 729
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 3 cut(s) 298, 512, 658
Ksp22I TGATCA 2 cut(s) 354, 714
Kzo9I GATC 2 cut(s) 354, 714
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 2 cut(s) 460, 820
LweI GCATC 1 cut(s) 173
MaeI CTAG 3 cut(s) 11, 267, 627
MaeIII GTNAC 4 cut(s) 337, 442, 697, 802
MalI GATC 2 cut(s) 356, 716
MboI GATC 2 cut(s) 354, 714
MboII GAAGA 5 cut(s) 29, 427, 430, 787, 790
MluCI AATT 3 cut(s) 102, 123, 130
MmeI TCCRAC 3 cut(s) 222, 546, 582
Mph1103I ATGCAT 1 cut(s) 94
MseI TTAA 5 cut(s) 30, 135, 480, 840, 869
MspI CCGG 4 cut(s) 80, 145, 174, 191
MspR9I CCNGG 3 cut(s) 145, 174, 175
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 3 cut(s) 145, 174, 175
NdeII GATC 2 cut(s) 354, 714
NlaIII CATG 3 cut(s) 298, 512, 658
NmuCI GTSAC 2 cut(s) 337, 697
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 2 cut(s) 298, 658
PciI ACATGT 2 cut(s) 294, 654
PfeI GAWTC 2 cut(s) 452, 812
PkrI GCNGC 3 cut(s) 46, 475, 835
PscI ACATGT 2 cut(s) 294, 654
PspPI GGNCC 1 cut(s) 142
RsaI GTAC 2 cut(s) 430, 790
RsaNI GTAC 2 cut(s) 429, 789
SaqAI TTAA 5 cut(s) 30, 135, 480, 840, 869
SatI GCNGC 3 cut(s) 45, 474, 834
Sau3AI GATC 2 cut(s) 354, 714
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 3 cut(s) 145, 174, 175
SetI ASST 9 cut(s) 224, 265, 498, 528, 536, 548, 584, 625, 858
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 2 cut(s) 52, 529
SmaI CCCGGG 1 cut(s) 175
Sse9I AATT 3 cut(s) 102, 123, 130
SsiI CCGC 4 cut(s) 44, 188, 274, 634
SspMI CTAG 3 cut(s) 11, 267, 627
StyD4I CCNGG 3 cut(s) 143, 172, 173
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 3 cut(s) 66, 440, 800
TasI AATT 3 cut(s) 102, 123, 130
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 2 cut(s) 452, 812
Tru1I TTAA 5 cut(s) 30, 135, 480, 840, 869
Tru9I TTAA 5 cut(s) 30, 135, 480, 840, 869
TseFI GTSAC 2 cut(s) 337, 697
TseI GCWGC 2 cut(s) 473, 833
Tsp45I GTSAC 2 cut(s) 337, 697
TspDTI ATGAA 6 cut(s) 17, 48, 74, 179, 428, 788
TspMI CCCGGG 1 cut(s) 173
XapI RAATTY 1 cut(s) 130
XceI RCATGY 2 cut(s) 298, 658
XmaI CCCGGG 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 10
XspI CTAG 3 cut(s) 11, 267, 627
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.