Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008124

Physical Location & Seq

Genomic Coordinates Forward (+)

37026200 .. 37029641

Gene Structure 3442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G432600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGAGATCCTAAAGCGACGTCGTTGCGTTCGCTCCCTCCCGGTTGCCGATTCTACCCCTCCGAAGAGCAGCTTCTCCGCTGCTACCTCTCGAACAAGAACGACGCCGACCTGGCCCAATCCGGCGGCTACGATTTGATCAGAGAGCTTGACTTGTACGACCACGATCCATTTGACTTACCTGACAGCGCTTGCTATTCGTACGGTCACGCGGGGAGGAAGAGGCACTGGTTTTGCTACACGGTTAGGGTTTTGAAGGAGAGGAGAGCGAAGAGCGGGTATTGGAGGAGGAAAGGGAGGGATAGGGACGTGGTGGGCCGTGGAGGGAAGGCGGTGTTGGGGAGGAGGACGAGCTTTGTATTTTATTTGGGGAATTCGCCCAACACTGCTGTACGGACTGATTGGGTTCTCTATCAGTATGCTCAGGTCGATCATGTAAAGGCTTCTTTTGTCCTGTGCCGAGTGTTTGTCAGATCTCGTCATGGAAATAGATTATCATATAATGGGGTAAGTTCTTGTGCTGAAGAAAGTGCTTGCACAGTTCGTCACATTGGAATTCAGCATGATGGATTTCATACTCCCAATATTGTTGAAACTGAAGTACATGGTGACAATTCTGCGCATAGGAAGAATGAGATGTTAAATTTTCCAATGAGACTGGACCGTGAGATAAATGACCGAGTCAAGAATGGGCCAGTTTCTATATCAAGACTTCAGCCTAATGGACAGGTTTGCCGTCAGAAATATCCACATGATTCCAAACAGATGAAAAGCATCAACCTATGGTCCCGTCATCCGTGCTTGGTGGTAGTAATCCAATATTTCTTGATGATTTGGAAACTGAGCATTTACTTTCCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

288

Amino Acids

33.17

Weight (kDa)

9.51

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008124)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34080 FvH4_2g34080 FvH4_2g34080 FvH4_2g34080
malus_domestica	MD08G1096700.v1.1 MD15G1079400.v1.1
prunus_persica	Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1
pyrus_communis	pycom08g07910 pycom15g07400
rosa_chinensis	RchiOBHm_Chr4g0400531 RchiOBHm_Chr4g0400541 RchiOBHm_Chr6g0308271
rosa_laevigata	RLG00000010652
rosa_multiflora	Rmu_ssc0000355.1_g000009
rosa_roxburghii	Rroxscaffold_7G00160300
rosa_rugosa	Rorug06G0365900
rosa_samantha	Rh4CG109900 Rh6AG474700 Rh6BG485300 Rh6CG490400 Rh6DG476800
rosa_wichuraiana	Rw6G041400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	23
Acc16I	TGCGCA	1 cut(s)	621
AccBSI	CCGCTC	1 cut(s)	276
AccII	CGCG	1 cut(s)	212
AciI	CCGC	5 cut(s)	79, 126, 212, 276, 332
AclWI	GGATC	2 cut(s)	2, 161
AcsI	RAATTY	3 cut(s)	373, 555, 643
AcuI	CTGAAG	3 cut(s)	543, 618, 698
AcyI	GRCGYC	2 cut(s)	20, 105
AfaI	GTAC	4 cut(s)	158, 203, 393, 603
AfeI	AGCGCT	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	256, 593
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	111
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	3 cut(s)	73, 148, 354
AluI	AGCT	3 cut(s)	73, 148, 354
Alw26I	GTCTC	1 cut(s)	649
AlwI	GGATC	2 cut(s)	2, 161
Aor51HI	AGCGCT	1 cut(s)	190
AoxI	GGCC	3 cut(s)	114, 316, 692
ApeKI	GCWGC	2 cut(s)	70, 81
ApoI	RAATTY	3 cut(s)	373, 555, 643
AspLEI	GCGC	2 cut(s)	191, 622
AspS9I	GGNCC	5 cut(s)	115, 316, 661, 692, 786
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	661, 786
BbvI	GCAGC	2 cut(s)	68, 82
BccI	CCATC	1 cut(s)	560
BceAI	ACGGC	2 cut(s)	303, 720
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	113
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	649
BfoI	RGCGCY	1 cut(s)	192
BglI	GCCNNNNNGGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	3 cut(s)	71, 82, 127
BlsI	GCNGC	3 cut(s)	72, 83, 128
Bme1390I	CCNGG	2 cut(s)	42, 113
Bme18I	GGWCC	2 cut(s)	661, 786
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	5 cut(s)	115, 316, 661, 692, 786
BmiI	GGNNCC	1 cut(s)	788
BmrFI	CCNGG	2 cut(s)	42, 113
BmsI	GCATC	1 cut(s)	783
Bpu10I	CCTNAGC	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	42
BsaHI	GRCGYC	2 cut(s)	20, 105
BsaJI	CCNNGG	1 cut(s)	319
Bse1I	ACTGG	3 cut(s)	233, 663, 695
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	793
BseMII	CTCAG	2 cut(s)	437, 833
BseNI	ACTGG	3 cut(s)	233, 663, 695
BseRI	GAGGAG	3 cut(s)	277, 301, 358
BseXI	GCAGC	2 cut(s)	68, 82
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	3 cut(s)	116, 318, 694
BsiSI	CCGG	2 cut(s)	42, 123
BsiWI	CGTACG	1 cut(s)	201
BslFI	GGGAC	2 cut(s)	320, 772
BsmAI	GTCTC	1 cut(s)	649
BsmFI	GGGAC	2 cut(s)	320, 772
BsnI	GGCC	3 cut(s)	116, 318, 694
Bsp143I	GATC	5 cut(s)	7, 138, 166, 430, 473
BspACI	CCGC	5 cut(s)	79, 126, 212, 276, 332
BspANI	GGCC	3 cut(s)	116, 318, 694
BspCNI	CTCAG	2 cut(s)	436, 834
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	788
BspPI	GGATC	2 cut(s)	2, 161
BspQI	GCTCTTC	2 cut(s)	60, 266
BsrBI	CCGCTC	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	233, 663, 695
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	5 cut(s)	7, 138, 166, 430, 473
BssNI	GRCGYC	2 cut(s)	20, 105
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	4 cut(s)	206, 244, 541, 665
Bst6I	CTCTTC	3 cut(s)	60, 215, 266
BstACI	GRCGYC	2 cut(s)	20, 105
BstC8I	GCNNGC	2 cut(s)	193, 535
BstDEI	CTNAG	2 cut(s)	423, 842
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	793
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	191, 622
BstKTI	GATC	5 cut(s)	10, 141, 169, 433, 476
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	5 cut(s)	7, 138, 166, 430, 473
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	2 cut(s)	40, 111
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	68, 82
BstX2I	RGATCY	2 cut(s)	7, 473
BstYI	RGATCY	2 cut(s)	7, 473
BsuRI	GGCC	3 cut(s)	116, 318, 694
BtgI	CCRYGG	1 cut(s)	319
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	793
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	2 cut(s)	226, 384
Cac8I	GCNNGC	2 cut(s)	193, 535
CfoI	GCGC	2 cut(s)	191, 622
Cfr13I	GGNCC	5 cut(s)	115, 316, 661, 692, 786
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	4 cut(s)	157, 202, 392, 602
CviAII	CATG	5 cut(s)	434, 482, 563, 605, 752
CviJI	RGCY	9 cut(s)	73, 116, 129, 148, 318, 354, 443, 694, 718
CviKI_1	RGCY	9 cut(s)	73, 116, 129, 148, 318, 354, 443, 694, 718
CviQI	GTAC	4 cut(s)	157, 202, 392, 602
DdeI	CTNAG	2 cut(s)	423, 842
DpnI	GATC	5 cut(s)	9, 140, 168, 432, 475
DpnII	GATC	5 cut(s)	7, 138, 166, 430, 473
Eam1104I	CTCTTC	3 cut(s)	60, 215, 266
EarI	CTCTTC	3 cut(s)	60, 215, 266
Eco47I	GGWCC	2 cut(s)	661, 786
Eco47III	AGCGCT	1 cut(s)	190
Eco57I	CTGAAG	3 cut(s)	543, 618, 698
EcoRI	GAATTC	2 cut(s)	373, 555
EcoRII	CCWGG	1 cut(s)	111
FaeI	CATG	5 cut(s)	437, 485, 566, 608, 755
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	2 cut(s)	320, 772
FatI	CATG	5 cut(s)	433, 481, 562, 604, 751
FauI	CCCGC	2 cut(s)	205, 269
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	71, 82, 127
FokI	GGATG	1 cut(s)	780
Fsp4HI	GCNGC	3 cut(s)	71, 82, 127
FspI	TGCGCA	1 cut(s)	621
GlaI	GCGC	2 cut(s)	190, 621
GluI	GCNGC	3 cut(s)	71, 82, 127
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	116, 318, 694
HapII	CCGG	2 cut(s)	42, 123
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	2 cut(s)	191, 622
Hin1I	GRCGYC	2 cut(s)	20, 105
Hin1II	CATG	5 cut(s)	437, 485, 566, 608, 755
Hin6I	GCGC	2 cut(s)	189, 620
HinP1I	GCGC	2 cut(s)	189, 620
HinfI	GANTC	3 cut(s)	51, 681, 755
HpaII	CCGG	2 cut(s)	42, 123
HphI	GGTGA	1 cut(s)	620
Hpy188I	TCNGA	4 cut(s)	64, 143, 473, 741
Hpy188III	TCNNGA	4 cut(s)	91, 685, 708, 826
Hpy99I	CGWCG	3 cut(s)	22, 25, 107
HpyAV	CCTTC	2 cut(s)	250, 322
HpyCH4III	ACNGT	4 cut(s)	206, 244, 541, 665
HpyCH4IV	ACGT	2 cut(s)	20, 309
HpyCH4V	TGCA	1 cut(s)	537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	423, 842
HpySE526I	ACGT	2 cut(s)	20, 309
Hsp92I	GRCGYC	2 cut(s)	20, 105
Hsp92II	CATG	5 cut(s)	437, 485, 566, 608, 755
HspAI	GCGC	2 cut(s)	189, 620
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	5 cut(s)	7, 138, 166, 430, 473
LguI	GCTCTTC	2 cut(s)	60, 266
LmnI	GCTCC	1 cut(s)	39
Lsp1109I	GCAGC	2 cut(s)	68, 82
LweI	GCATC	1 cut(s)	783
MaeII	ACGT	2 cut(s)	20, 309
MaeIII	GTNAC	3 cut(s)	206, 545, 608
MalI	GATC	5 cut(s)	9, 140, 168, 432, 475
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	5 cut(s)	7, 138, 166, 430, 473
MboII	GAAGA	5 cut(s)	77, 232, 283, 536, 640
MflI	RGATCY	2 cut(s)	7, 473
MluCI	AATT	4 cut(s)	373, 555, 613, 643
MlyI	GAGTC	1 cut(s)	690
MseI	TTAA	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	2 cut(s)	42, 123
MspR9I	CCNGG	2 cut(s)	42, 113
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	5 cut(s)	7, 138, 166, 430, 473
NlaIII	CATG	5 cut(s)	437, 485, 566, 608, 755
NlaIV	GGNNCC	1 cut(s)	788
NmeAIII	GCCGAG	1 cut(s)	485
NmuCI	GTSAC	3 cut(s)	206, 545, 608
NsbI	TGCGCA	1 cut(s)	621
PciSI	GCTCTTC	2 cut(s)	60, 266
PfeI	GAWTC	2 cut(s)	51, 755
Pfl23II	CGTACG	1 cut(s)	201
PflFI	GACNNNGTC	1 cut(s)	680
PkrI	GCNGC	3 cut(s)	72, 83, 128
PleI	GAGTC	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspLI	CGTACG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	788
PspPI	GGNCC	5 cut(s)	115, 316, 661, 692, 786
PsuI	RGATCY	2 cut(s)	7, 473
PsyI	GACNNNGTC	1 cut(s)	680
RsaI	GTAC	4 cut(s)	158, 203, 393, 603
RsaNI	GTAC	4 cut(s)	157, 202, 392, 602
SapI	GCTCTTC	2 cut(s)	60, 266
SaqAI	TTAA	1 cut(s)	641
SatI	GCNGC	3 cut(s)	71, 82, 127
Sau3AI	GATC	5 cut(s)	7, 138, 166, 430, 473
Sau96I	GGNCC	5 cut(s)	115, 316, 661, 692, 786
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	2 cut(s)	42, 113
SfaNI	GCATC	1 cut(s)	783
SinI	GGWCC	2 cut(s)	661, 786
Sse9I	AATT	4 cut(s)	373, 555, 613, 643
SsiI	CCGC	5 cut(s)	79, 126, 212, 276, 332
SspI	AATATT	2 cut(s)	586, 821
StyD4I	CCNGG	2 cut(s)	40, 111
TaaI	ACNGT	4 cut(s)	206, 244, 541, 665
TaiI	ACGT	2 cut(s)	23, 312
TaqI	TCGA	2 cut(s)	92, 429
TaqII	GACCGA	1 cut(s)	693
TasI	AATT	4 cut(s)	373, 555, 613, 643
TatI	WGTACW	1 cut(s)	601
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	51, 755
Tru1I	TTAA	1 cut(s)	641
Tru9I	TTAA	1 cut(s)	641
TscAI	CASTG	2 cut(s)	233, 391
TseFI	GTSAC	3 cut(s)	206, 545, 608
TseI	GCWGC	2 cut(s)	70, 81
Tsp45I	GTSAC	3 cut(s)	206, 545, 608
TspDTI	ATGAA	2 cut(s)	563, 782
TspGWI	ACGGA	2 cut(s)	409, 786
TspRI	CASTG	2 cut(s)	233, 391
Tth111I	GACNNNGTC	1 cut(s)	680
VpaK11BI	GGWCC	2 cut(s)	661, 786
XapI	RAATTY	3 cut(s)	373, 555, 643
ZraI	GACGTC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.