Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008124

Physical Location & Seq

Genomic Coordinates Forward (+)

6379660 .. 6381796

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGAGATCCTAAAGCGACGTCGTTGCTTTCGCTGCCCCCCGGTTGCCGATTCTACCCCTCGGAGGAGCAGCTCCTCTGCCACTACCTCCCCAACAAGAACGCCGCCGAGGCGGGGAAATCGGGCGGGTACGATTTGATCAGGGAGCTCGATTTGCACGGCCACGATCCGTTCGAGCTGCCGGAGAGCGCGTGTTACTCGTACGGCCACGGAGGGAGGAAGAGGCACTGGTTCTGCTACACGGTTAGGGTTTTGAAGGAGAGGAGGGCGAAGGGCGGGTATTGGCGGAGGCAAGGGCGGGTTAGGGACGTGGTGGGCCGTGGAGGGAAGGTGGTTCTGGGGAGGAGGTCGCGCTTCGTGTTTTATTTGGGGAATTCGGCAAACGACGCCGTAAGGACTGATTGGGTTCTCTATCAGTATGCTCAGGTTGATCATGTTAAGGCTGCTTTTGTCCTTTGCCGTATTTTGATGAGATCTCGTAGTGGAAATAGAATATCAGATCATGGTTTAAGTTCTTATGCTGAAGAAAGTGCTTGCACTGTTCGTCACATTGGAATTCAGCATGATGGATTTCATACTCCCAGTAGTAGTGAAAATGAAGTGCATGGTGACACTTCTGTGCCTAGGAAAAATGAGATGTCAAAGTATCCGGGGCTGGACCCTGAGCTAGATGATCGAGTCATGACAAGGCCTGTTTCTATATCAAGAATTCAGTCTAATGAACAGGTGCCAGCATCTGTGCTCGGTGGTAGGAATCCAATATTGCTTGATAATTTGGCTGCCAAGCACTTACATTCCATTATGGAGGGTGATTTTATAGAGTTGGATGATCTCATCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

281

Amino Acids

31.48

Weight (kDa)

8.18

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	13 - 141	6.4e-22	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008124)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34080 FvH4_2g34080 FvH4_2g34080 FvH4_2g34080
malus_domestica	MD08G1096700.v1.1 MD15G1079400.v1.1
prunus_persica	Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1
pyrus_communis	pycom08g07910 pycom15g07400
rosa_chinensis	RchiOBHm_Chr4g0400531 RchiOBHm_Chr4g0400541 RchiOBHm_Chr6g0308271
rosa_laevigata	RLG00000010652
rosa_multiflora	Rmu_ssc0000355.1_g000009
rosa_roxburghii	Rroxscaffold_7G00160300
rosa_rugosa	Rorug06G0365900
rosa_samantha	Rh4CG109900 Rh6AG474700 Rh6BG485300 Rh6CG490400 Rh6DG476800
rosa_wichuraiana	Rw6G041400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	727
AccII	CGCG	2 cut(s)	191, 352
AciI	CCGC	6 cut(s)	105, 113, 126, 276, 286, 298
AclWI	GGATC	2 cut(s)	2, 161
AcoI	YGGCCR	2 cut(s)	160, 205
AcsI	RAATTY	3 cut(s)	373, 555, 708
AcuI	CTGAAG	1 cut(s)	543
AcyI	GRCGYC	2 cut(s)	20, 387
AfaI	GTAC	2 cut(s)	131, 203
AfiI	CCNNNNNNNGG	2 cut(s)	64, 114
AgsI	TTSAA	1 cut(s)	256
AjiI	CACGTC	1 cut(s)	310
AleI	CACNNNNGTG	1 cut(s)	617
AluBI	AGCT	4 cut(s)	73, 148, 178, 667
AluI	AGCT	4 cut(s)	73, 148, 178, 667
Alw21I	GWGCWC	2 cut(s)	150, 744
AlwI	GGATC	2 cut(s)	2, 161
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	4 cut(s)	160, 205, 316, 689
ApeKI	GCWGC	5 cut(s)	34, 70, 178, 443, 779
ApoI	RAATTY	3 cut(s)	373, 555, 708
AspA2I	CCTAGG	1 cut(s)	623
AspLEI	GCGC	2 cut(s)	191, 354
AspS9I	GGNCC	2 cut(s)	316, 658
AsuC2I	CCSGG	2 cut(s)	42, 651
AsuHPI	GGTGA	2 cut(s)	620, 821
AvaII	GGWCC	1 cut(s)	658
AvrII	CCTAGG	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	727
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	150, 744
BbvI	GCAGC	5 cut(s)	21, 82, 165, 430, 766
BccI	CCATC	1 cut(s)	560
BceAI	ACGGC	5 cut(s)	175, 220, 303, 374, 444
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciVI	GTATCC	1 cut(s)	657
BclI	TGATCA	2 cut(s)	138, 430
BcnI	CCSGG	2 cut(s)	42, 651
BfaI	CTAG	2 cut(s)	624, 668
BfuI	GTATCC	1 cut(s)	657
BglI	GCCNNNNNGGC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	6 cut(s)	35, 71, 105, 179, 444, 780
BlnI	CCTAGG	1 cut(s)	623
BlsI	GCNGC	6 cut(s)	36, 72, 106, 180, 445, 781
Bme1390I	CCNGG	2 cut(s)	42, 651
Bme18I	GGWCC	1 cut(s)	658
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	316, 658
BmiI	GGNNCC	2 cut(s)	660, 729
BmrFI	CCNGG	2 cut(s)	42, 651
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	1 cut(s)	743
BmuI	ACTGGG	1 cut(s)	576
Bpu10I	CCTNAGC	2 cut(s)	423, 663
BpuMI	CCSGG	2 cut(s)	42, 651
Bsa29I	ATCGAT	1 cut(s)	837
BsaHI	GRCGYC	2 cut(s)	20, 387
BsaJI	CCNNGG	7 cut(s)	40, 60, 108, 208, 319, 623, 650
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 114
Bse1I	ACTGG	2 cut(s)	233, 582
BseCI	ATCGAT	1 cut(s)	837
BseDI	CCNNGG	7 cut(s)	40, 60, 108, 208, 319, 623, 650
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	2 cut(s)	64, 114
BseMII	CTCAG	2 cut(s)	437, 654
BseNI	ACTGG	2 cut(s)	233, 582
BseRI	GAGGAG	4 cut(s)	65, 80, 277, 358
BseXI	GCAGC	5 cut(s)	21, 82, 165, 430, 766
Bsh1236I	CGCG	2 cut(s)	191, 352
BshFI	GGCC	4 cut(s)	162, 207, 318, 691
BshNI	GGYRCC	1 cut(s)	727
BshVI	ATCGAT	1 cut(s)	837
BsiHKAI	GWGCWC	2 cut(s)	150, 744
BsiSI	CCGG	3 cut(s)	42, 182, 650
BsiWI	CGTACG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	64, 114
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	4 cut(s)	162, 207, 318, 691
Bsp1286I	GDGCHC	2 cut(s)	150, 744
Bsp143I	GATC	8 cut(s)	7, 138, 166, 430, 473, 499, 673, 829
BspACI	CCGC	6 cut(s)	105, 113, 126, 276, 286, 298
BspANI	GGCC	4 cut(s)	162, 207, 318, 691
BspCNI	CTCAG	2 cut(s)	436, 655
BspDI	ATCGAT	1 cut(s)	837
BspFNI	CGCG	2 cut(s)	191, 352
BspHI	TCATGA	1 cut(s)	681
BspLI	GGNNCC	2 cut(s)	660, 729
BspPI	GGATC	2 cut(s)	2, 161
BspT107I	GGYRCC	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	233, 582
BssECI	CCNNGG	7 cut(s)	40, 60, 108, 208, 319, 623, 650
BssMI	GATC	8 cut(s)	7, 138, 166, 430, 473, 499, 673, 829
BssNI	GRCGYC	2 cut(s)	20, 387
BssT1I	CCWWGG	1 cut(s)	623
Bst4CI	ACNGT	2 cut(s)	244, 541
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	2 cut(s)	20, 387
BstC8I	GCNNGC	2 cut(s)	535, 732
BstDEI	CTNAG	2 cut(s)	423, 663
BstDSI	CCRYGG	2 cut(s)	208, 319
BstF5I	GGATG	1 cut(s)	832
BstFNI	CGCG	2 cut(s)	191, 352
BstHHI	GCGC	2 cut(s)	191, 354
BstKTI	GATC	8 cut(s)	10, 141, 169, 433, 476, 502, 676, 832
BstMBI	GATC	8 cut(s)	7, 138, 166, 430, 473, 499, 673, 829
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 110, 154, 386
BstSCI	CCNGG	2 cut(s)	40, 649
BstUI	CGCG	2 cut(s)	191, 352
BstV1I	GCAGC	5 cut(s)	21, 82, 165, 430, 766
BstX2I	RGATCY	2 cut(s)	7, 473
BstYI	RGATCY	2 cut(s)	7, 473
Bsu15I	ATCGAT	1 cut(s)	837
BsuI	GTATCC	1 cut(s)	657
BsuRI	GGCC	4 cut(s)	162, 207, 318, 691
BsuTUI	ATCGAT	1 cut(s)	837
BtgI	CCRYGG	2 cut(s)	208, 319
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	832
BtsIMutI	CAGTG	2 cut(s)	226, 537
Cac8I	GCNNGC	2 cut(s)	535, 732
CaiI	CAGNNNCTG	1 cut(s)	737
CciI	TCATGA	1 cut(s)	681
CfoI	GCGC	2 cut(s)	191, 354
Cfr13I	GGNCC	2 cut(s)	316, 658
ClaI	ATCGAT	1 cut(s)	837
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	2 cut(s)	130, 202
CviAII	CATG	5 cut(s)	434, 503, 563, 605, 682
CviQI	GTAC	2 cut(s)	130, 202
DdeI	CTNAG	2 cut(s)	423, 663
DpnI	GATC	8 cut(s)	9, 140, 168, 432, 475, 501, 675, 831
DpnII	GATC	8 cut(s)	7, 138, 166, 430, 473, 499, 673, 829
EaeI	YGGCCR	2 cut(s)	160, 205
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EciI	GGCGGA	1 cut(s)	301
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	623
Eco147I	AGGCCT	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	148
EcoRI	GAATTC	3 cut(s)	373, 555, 708
EcoT14I	CCWWGG	1 cut(s)	623
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	5 cut(s)	437, 506, 566, 608, 685
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	5 cut(s)	433, 502, 562, 604, 681
FauI	CCCGC	4 cut(s)	106, 119, 269, 291
FbaI	TGATCA	2 cut(s)	138, 430
Fnu4HI	GCNGC	6 cut(s)	35, 71, 105, 179, 444, 780
FokI	GGATG	1 cut(s)	839
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	6 cut(s)	35, 71, 105, 179, 444, 780
FspBI	CTAG	2 cut(s)	624, 668
GlaI	GCGC	2 cut(s)	190, 353
GluI	GCNGC	6 cut(s)	35, 71, 105, 179, 444, 780
HaeIII	GGCC	4 cut(s)	162, 207, 318, 691
HapII	CCGG	3 cut(s)	42, 182, 650
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	2 cut(s)	191, 354
Hin1I	GRCGYC	2 cut(s)	20, 387
Hin1II	CATG	5 cut(s)	437, 506, 566, 608, 685
Hin6I	GCGC	2 cut(s)	189, 352
HinP1I	GCGC	2 cut(s)	189, 352
HinfI	GANTC	3 cut(s)	51, 678, 754
HpaII	CCGG	3 cut(s)	42, 182, 650
HphI	GGTGA	2 cut(s)	620, 821
Hpy188I	TCNGA	2 cut(s)	64, 499
Hpy188III	TCNNGA	2 cut(s)	682, 705
Hpy99I	CGWCG	3 cut(s)	22, 25, 389
HpyAV	CCTTC	3 cut(s)	250, 265, 322
HpyCH4III	ACNGT	2 cut(s)	244, 541
HpyCH4IV	ACGT	2 cut(s)	20, 309
HpyCH4V	TGCA	3 cut(s)	157, 537, 604
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 110, 154, 386
HpyF3I	CTNAG	2 cut(s)	423, 663
HpySE526I	ACGT	2 cut(s)	20, 309
Hsp92I	GRCGYC	2 cut(s)	20, 387
Hsp92II	CATG	5 cut(s)	437, 506, 566, 608, 685
HspAI	GCGC	2 cut(s)	189, 352
Ksp22I	TGATCA	2 cut(s)	138, 430
Kzo9I	GATC	8 cut(s)	7, 138, 166, 430, 473, 499, 673, 829
LmnI	GCTCC	3 cut(s)	67, 78, 145
Lsp1109I	GCAGC	5 cut(s)	21, 82, 165, 430, 766
LweI	GCATC	1 cut(s)	743
MaeI	CTAG	2 cut(s)	624, 668
MaeII	ACGT	2 cut(s)	20, 309
MaeIII	GTNAC	3 cut(s)	194, 545, 608
MalI	GATC	8 cut(s)	9, 140, 168, 432, 475, 501, 675, 831
MboI	GATC	8 cut(s)	7, 138, 166, 430, 473, 499, 673, 829
MboII	GAAGA	2 cut(s)	232, 536
MflI	RGATCY	2 cut(s)	7, 473
MhlI	GDGCHC	2 cut(s)	150, 744
MluCI	AATT	4 cut(s)	373, 555, 708, 772
MlyI	GAGTC	1 cut(s)	687
MmeI	TCCRAC	1 cut(s)	804
MseI	TTAA	2 cut(s)	438, 509
MslI	CAYNNNNRTG	1 cut(s)	617
MspI	CCGG	3 cut(s)	42, 182, 650
MspR9I	CCNGG	2 cut(s)	42, 651
MvnI	CGCG	2 cut(s)	191, 352
MwoI	GCNNNNNNNGC	4 cut(s)	34, 110, 154, 386
NciI	CCSGG	2 cut(s)	42, 651
NdeII	GATC	8 cut(s)	7, 138, 166, 430, 473, 499, 673, 829
NlaIII	CATG	5 cut(s)	437, 506, 566, 608, 685
NlaIV	GGNNCC	2 cut(s)	660, 729
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	545, 608
OliI	CACNNNNGTG	1 cut(s)	617
PagI	TCATGA	1 cut(s)	681
PceI	AGGCCT	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	51, 754
Pfl23II	CGTACG	1 cut(s)	201
PkrI	GCNGC	6 cut(s)	36, 72, 106, 180, 445, 781
PleI	GAGTC	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	686
Psp124BI	GAGCTC	1 cut(s)	150
PspLI	CGTACG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	660, 729
PspPI	GGNCC	2 cut(s)	316, 658
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	2 cut(s)	7, 473
RsaI	GTAC	2 cut(s)	131, 203
RsaNI	GTAC	2 cut(s)	130, 202
RseI	CAYNNNNRTG	1 cut(s)	617
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	438, 509
SatI	GCNGC	6 cut(s)	35, 71, 105, 179, 444, 780
Sau3AI	GATC	8 cut(s)	7, 138, 166, 430, 473, 499, 673, 829
Sau96I	GGNCC	2 cut(s)	316, 658
SchI	GAGTC	1 cut(s)	687
ScrFI	CCNGG	2 cut(s)	42, 651
SduI	GDGCHC	2 cut(s)	150, 744
SfaNI	GCATC	1 cut(s)	743
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	617
Sse9I	AATT	4 cut(s)	373, 555, 708, 772
SseBI	AGGCCT	1 cut(s)	691
SsiI	CCGC	6 cut(s)	105, 113, 126, 276, 286, 298
SspI	AATATT	1 cut(s)	762
SspMI	CTAG	2 cut(s)	624, 668
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	691
StyD4I	CCNGG	2 cut(s)	40, 649
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	2 cut(s)	244, 541
TaiI	ACGT	2 cut(s)	23, 312
TaqI	TCGA	4 cut(s)	150, 174, 676, 837
TasI	AATT	4 cut(s)	373, 555, 708, 772
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	51, 754
Tru1I	TTAA	2 cut(s)	438, 509
Tru9I	TTAA	2 cut(s)	438, 509
TscAI	CASTG	2 cut(s)	233, 544
TseFI	GTSAC	2 cut(s)	545, 608
TseI	GCWGC	5 cut(s)	34, 70, 178, 443, 779
Tsp45I	GTSAC	2 cut(s)	545, 608
TspDTI	ATGAA	3 cut(s)	563, 612, 735
TspGWI	ACGGA	2 cut(s)	159, 225
TspRI	CASTG	2 cut(s)	233, 544
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	3 cut(s)	373, 555, 708
XmaJI	CCTAGG	1 cut(s)	623
XspI	CTAG	2 cut(s)	624, 668
ZraI	GACGTC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.