Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000355.1

Orthogroup ID

OG0008124

Physical Location & Seq

Genomic Coordinates Reverse (-)

29433 .. 32221

Gene Structure 2789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000355.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgggcgatgccaaagcgacgtcgtattacctccctcccggctgccgattctacccctccgaggagcagctcctctgctactacctctcccacaagaacggcgccggccaggccagctccggcaacggtggctatgatttgatcaaggagctcgacttgtacgaccacgacccctttgatttgcccgactatgcctgctactcgtacggccacggcggacggaggcggcactggtactgctacacggttagggttgtgaaggagcggcgggccaagggcgggtattggaggaggaaaggaagggttagggacgtcgtgggccgcggagggaatgccgtgttgggccggaggagtagctatgagttttatttggggagttcgcccaagacggcggtgaggactgactgggtgctctatcagtatgctcaggttgatcacgttcaggcctcttttgtcctgtgccgagtatttgtcagatctcagggtggaactagcaaatcagagaatggcttaagttcttgtgctgaagaaactgtttccacagtacgtctcattggaattcagcatggtggattttgtactcctcatattgttcctgagattcacagtgacaaatctgtgcctaggaacactgacaagtcaaaagatcaaatgacactggagactgaagttgataagcaagtcaagactgggcctctatcaagtattcagactaatgaacaggtgcagtcatatgtgctcggtgttgaggcaggatcaccacctgtaaagatttgcttgtgcctcaaaggcatgttttcactggaattagaggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

272

Amino Acids

30.41

Weight (kDa)

8.48

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008124)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34080 FvH4_2g34080 FvH4_2g34080 FvH4_2g34080
malus_domestica	MD08G1096700.v1.1 MD15G1079400.v1.1
prunus_persica	Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1
pyrus_communis	pycom08g07910 pycom15g07400
rosa_chinensis	RchiOBHm_Chr4g0400531 RchiOBHm_Chr4g0400541 RchiOBHm_Chr6g0308271
rosa_laevigata	RLG00000010652
rosa_multiflora	Rmu_ssc0000355.1_g000009
rosa_roxburghii	Rroxscaffold_7G00160300
rosa_rugosa	Rorug06G0365900
rosa_samantha	Rh4CG109900 Rh6AG474700 Rh6BG485300 Rh6CG490400 Rh6DG476800
rosa_wichuraiana	Rw6G041400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	23, 315
AccB1I	GGYRCC	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	265
AccII	CGCG	1 cut(s)	324
AciI	CCGC	8 cut(s)	216, 226, 265, 268, 279, 322, 324, 392
AclWI	GGATC	1 cut(s)	763
AcoI	YGGCCR	2 cut(s)	106, 208
AcsI	RAATTY	1 cut(s)	558
AcuI	CTGAAG	2 cut(s)	546, 687
AcyI	GRCGYC	3 cut(s)	20, 102, 312
AfaI	GTAC	5 cut(s)	161, 206, 236, 546, 580
AfiI	CCNNNNNNNGG	2 cut(s)	61, 279
AflII	CTTAAG	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	4 cut(s)	70, 117, 151, 357
AluI	AGCT	4 cut(s)	70, 117, 151, 357
Alw21I	GWGCWC	3 cut(s)	153, 414, 741
Alw26I	GTCTC	2 cut(s)	554, 656
AlwI	GGATC	1 cut(s)	763
AoxI	GGCC	8 cut(s)	106, 111, 208, 270, 319, 343, 444, 692
ApeKI	GCWGC	2 cut(s)	42, 67
ApoI	RAATTY	1 cut(s)	558
AspA2I	CCTAGG	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	4 cut(s)	270, 319, 343, 692
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	406, 750
AvrII	CCTAGG	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	3 cut(s)	153, 414, 741
BbvI	GCAGC	2 cut(s)	29, 79
BceAI	ACGGC	5 cut(s)	115, 223, 229, 320, 405
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	2 cut(s)	141, 433
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	554, 656
BfaI	CTAG	2 cut(s)	492, 624
BfoI	RGCGCY	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	511
BglI	GCCNNNNNGGC	2 cut(s)	110, 789
BglII	AGATCT	1 cut(s)	476
BisI	GCNGC	5 cut(s)	43, 68, 227, 266, 322
BlnI	CCTAGG	1 cut(s)	623
BlsI	GCNGC	5 cut(s)	44, 69, 228, 267, 323
Bme1390I	CCNGG	2 cut(s)	39, 110
BmgT120I	GGNCC	4 cut(s)	270, 319, 343, 692
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	2 cut(s)	39, 110
BmrI	ACTGGG	2 cut(s)	415, 699
BmuI	ACTGGG	2 cut(s)	415, 699
BpmI	CTGGAG	1 cut(s)	680
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	39
BsaHI	GRCGYC	3 cut(s)	20, 102, 312
BsaJI	CCNNGG	5 cut(s)	60, 211, 273, 322, 623
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 279
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	5 cut(s)	236, 410, 663, 694, 807
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	5 cut(s)	60, 211, 273, 322, 623
BseLI	CCNNNNNNNGG	2 cut(s)	61, 279
BseMII	CTCAG	3 cut(s)	440, 494, 588
BseNI	ACTGG	5 cut(s)	236, 410, 663, 694, 807
BseRI	GAGGAG	5 cut(s)	62, 77, 304, 364, 573
BseXI	GCAGC	2 cut(s)	29, 79
BsgI	GTGCAG	1 cut(s)	746
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	8 cut(s)	108, 113, 210, 272, 321, 345, 446, 694
BshNI	GGYRCC	1 cut(s)	101
BsiHKAI	GWGCWC	3 cut(s)	153, 414, 741
BsiSI	CCGG	4 cut(s)	39, 105, 120, 346
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	61, 279
BsmAI	GTCTC	2 cut(s)	554, 656
BsmBI	CGTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	8 cut(s)	108, 113, 210, 272, 321, 345, 446, 694
Bsp1286I	GDGCHC	3 cut(s)	153, 414, 741
Bsp143I	GATC	5 cut(s)	141, 433, 476, 646, 755
BspACI	CCGC	8 cut(s)	216, 226, 265, 268, 279, 322, 324, 392
BspANI	GGCC	8 cut(s)	108, 113, 210, 272, 321, 345, 446, 694
BspCNI	CTCAG	3 cut(s)	439, 493, 589
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	763
BspT107I	GGYRCC	1 cut(s)	101
BspTI	CTTAAG	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	5 cut(s)	236, 410, 663, 694, 807
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	5 cut(s)	60, 211, 273, 322, 623
BssMI	GATC	5 cut(s)	141, 433, 476, 646, 755
BssNI	GRCGYC	3 cut(s)	20, 102, 312
BssT1I	CCWWGG	2 cut(s)	273, 623
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	5 cut(s)	128, 247, 535, 544, 608
BstACI	GRCGYC	3 cut(s)	20, 102, 312
BstAFI	CTTAAG	1 cut(s)	511
BstC8I	GCNNGC	4 cut(s)	106, 115, 196, 270
BstDEI	CTNAG	3 cut(s)	426, 480, 597
BstDSI	CCRYGG	2 cut(s)	211, 322
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	5 cut(s)	144, 436, 479, 649, 758
BstMAI	GTCTC	2 cut(s)	554, 656
BstMBI	GATC	5 cut(s)	141, 433, 476, 646, 755
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 114, 129, 789
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	796
BstSCI	CCNGG	2 cut(s)	37, 108
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	29, 79
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	8 cut(s)	108, 113, 210, 272, 321, 345, 446, 694
BtgI	CCRYGG	2 cut(s)	211, 322
BtgZI	GCGATG	1 cut(s)	21
BtsIMutI	CAGTG	5 cut(s)	229, 613, 630, 656, 800
Cac8I	GCNNGC	4 cut(s)	106, 115, 196, 270
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	4 cut(s)	270, 319, 343, 692
Cfr42I	CCGCGG	1 cut(s)	325
Csp6I	GTAC	5 cut(s)	160, 205, 235, 545, 579
CviAII	CATG	2 cut(s)	566, 793
CviQI	GTAC	5 cut(s)	160, 205, 235, 545, 579
DdeI	CTNAG	3 cut(s)	426, 480, 597
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	5 cut(s)	143, 435, 478, 648, 757
DpnII	GATC	5 cut(s)	141, 433, 476, 646, 755
EaeI	YGGCCR	2 cut(s)	106, 208
EciI	GGCGGA	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	273, 623
Eco147I	AGGCCT	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	546, 687
EcoICRI	GAGCTC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	273, 623
EcoT38I	GRGCYC	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
ErhI	CCWWGG	2 cut(s)	273, 623
Esp3I	CGTCTC	1 cut(s)	554
FaeI	CATG	2 cut(s)	569, 796
FaiI	YATR	9 cut(s)	135, 192, 360, 423, 567, 588, 733, 735, 794
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	2 cut(s)	565, 792
FauI	CCCGC	2 cut(s)	261, 272
FauNDI	CATATG	1 cut(s)	733
FbaI	TGATCA	2 cut(s)	141, 433
Fnu4HI	GCNGC	5 cut(s)	43, 68, 227, 266, 322
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	5 cut(s)	43, 68, 227, 266, 322
FspBI	CTAG	2 cut(s)	492, 624
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	5 cut(s)	43, 68, 227, 266, 322
GsuI	CTGGAG	1 cut(s)	680
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	8 cut(s)	108, 113, 210, 272, 321, 345, 446, 694
HapII	CCGG	4 cut(s)	39, 105, 120, 346
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	3 cut(s)	20, 102, 312
Hin1II	CATG	2 cut(s)	569, 796
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	2 cut(s)	48, 601
HpaII	CCGG	4 cut(s)	39, 105, 120, 346
HphI	GGTGA	2 cut(s)	406, 750
Hpy188I	TCNGA	4 cut(s)	61, 476, 502, 711
Hpy188III	TCNNGA	2 cut(s)	596, 685
Hpy99I	CGWCG	3 cut(s)	22, 25, 317
HpyAV	CCTTC	2 cut(s)	253, 294
HpyCH4III	ACNGT	5 cut(s)	128, 247, 535, 544, 608
HpyCH4IV	ACGT	4 cut(s)	20, 312, 438, 547
HpyCH4V	TGCA	1 cut(s)	727
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 114, 129, 789
HpyF3I	CTNAG	3 cut(s)	426, 480, 597
HpySE526I	ACGT	4 cut(s)	20, 312, 438, 547
Hsp92I	GRCGYC	3 cut(s)	20, 102, 312
Hsp92II	CATG	2 cut(s)	569, 796
HspAI	GCGC	1 cut(s)	102
KasI	GGCGCC	1 cut(s)	101
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	2 cut(s)	141, 433
KspI	CCGCGG	1 cut(s)	325
Kzo9I	GATC	5 cut(s)	141, 433, 476, 646, 755
LmnI	GCTCC	5 cut(s)	64, 75, 122, 148, 262
Lsp1109I	GCAGC	2 cut(s)	29, 79
MaeI	CTAG	2 cut(s)	492, 624
MaeII	ACGT	4 cut(s)	20, 312, 438, 547
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	5 cut(s)	143, 435, 478, 648, 757
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	5 cut(s)	141, 433, 476, 646, 755
MboII	GAAGA	1 cut(s)	539
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	3 cut(s)	153, 414, 741
MluCI	AATT	2 cut(s)	558, 806
Mly113I	GGCGCC	1 cut(s)	102
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	324
MspCI	CTTAAG	1 cut(s)	511
MspI	CCGG	4 cut(s)	39, 105, 120, 346
MspR9I	CCNGG	2 cut(s)	39, 110
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	4 cut(s)	110, 114, 129, 789
NaeI	GCCGGC	1 cut(s)	106
NarI	GGCGCC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	5 cut(s)	141, 433, 476, 646, 755
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	2 cut(s)	569, 796
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	1 cut(s)	796
PceI	AGGCCT	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	337
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	48, 601
Pfl23II	CGTACG	1 cut(s)	204
PkrI	GCNGC	5 cut(s)	44, 69, 228, 267, 323
PluTI	GGCGCC	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspLI	CGTACG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	4 cut(s)	270, 319, 343, 692
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	5 cut(s)	161, 206, 236, 546, 580
RsaNI	GTAC	5 cut(s)	160, 205, 235, 545, 579
SacI	GAGCTC	1 cut(s)	153
SacII	CCGCGG	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	5 cut(s)	43, 68, 227, 266, 322
Sau3AI	GATC	5 cut(s)	141, 433, 476, 646, 755
Sau96I	GGNCC	4 cut(s)	270, 319, 343, 692
ScrFI	CCNGG	2 cut(s)	39, 110
SduI	GDGCHC	3 cut(s)	153, 414, 741
SfoI	GGCGCC	1 cut(s)	103
Sfr303I	CCGCGG	1 cut(s)	325
SgrBI	CCGCGG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	2 cut(s)	558, 806
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	8 cut(s)	216, 226, 265, 268, 279, 322, 324, 392
SspDI	GGCGCC	1 cut(s)	101
SspMI	CTAG	2 cut(s)	492, 624
SstI	GAGCTC	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	37, 108
StyI	CCWWGG	2 cut(s)	273, 623
TaaI	ACNGT	5 cut(s)	128, 247, 535, 544, 608
TaiI	ACGT	4 cut(s)	23, 315, 441, 550
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	558, 806
TatI	WGTACW	1 cut(s)	578
TauI	GCSGC	3 cut(s)	229, 268, 324
TfiI	GAWTC	2 cut(s)	48, 601
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	5 cut(s)	236, 613, 637, 663, 807
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	2 cut(s)	42, 67
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	1 cut(s)	732
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	5 cut(s)	236, 613, 637, 663, 807
Vha464I	CTTAAG	1 cut(s)	511
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	1 cut(s)	796
XmaJI	CCTAGG	1 cut(s)	623
XspI	CTAG	2 cut(s)	492, 624
ZraI	GACGTC	2 cut(s)	21, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.