Rh6BG485300
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008124
Physical Location & Seq
Reverse (-)
69006753 .. 69010125
3373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG485300.1

Sequence Viewer

Length: 864 bp
ATGGGCGATGCCAAAGCGACGTCGTATTACCTCCCTCCCGGCTGCCGATTCTACCCCTCCGAGGAGCAGCTCCTCTGCTACTACCTCTCCCACCAGAACAGCGCCGGCCAGGCCAGCTCCGGCAACGGTGGCTATGATTTGATCAAGGAGCTCGACTTGTACGACCACGACCCCTTTGATTTGCCCGACTATGCCTGCTACTCGTACGGCCACGGCGGACGGAGGCGGCACTGGTACTGCTACACGGTTAGGGTTGTGAAGGAGCGGCGGGCCAAGAGCGGGTATTGGAGGAGGAAAGGAAGGGTTAGGGACGTCGTGGGCCGCGGAGGGAAGGCGGTGTTGGGCCGGAGGAGTAGCTATGAGTTTTATTTGGGGAATTCGCCCAAGACGGCGGTGAGGACTGACTGGGTGCTCTACCAGTATGCTCAGGTTGATCACGTTCAGGCCTCTTTTGTCCTGTGCCGAGTATTTGTCAGATCTCAGGGTGGAACTAGCAAATCAGACAATGGCTTAAGTTCTTGTGCTGAAGAAACTGTTTCCACAGTACGTCACATTGGAATTCAGCATGGTGGATTTTGTACTCCTCATATTGTTCCTGAGATTCACGGTGACAAATCTGTGCCTAGGAACACTGACAAGTCAAAAGATCAAATGACACTGGAGACTGAAGTTGATAAGCAAGTCGAGACTGGGCCTCTATCAAGTATTCAGACTAATGAACAGGTAATGCATTACAAACAATTCTCTTTCCACTTCAGTTATGATACTATCACCATTTACATGTGCAATATACTACTGTCATCAACAGTTTTTTCACTAGAATCTGATGCCAATAAGTGCTTCATCTCGATCCTTTTTGTTTAA

Protein Analysis

287

Amino Acids

32.55

Weight (kDa)

8.29

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 142 2.8e-21 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 23, 315
AccBSI CCGCTC 2 cut(s) 265, 279
AccII CGCG 1 cut(s) 324
AciI CCGC 9 cut(s) 216, 226, 265, 268, 279, 322, 324, 335, 392
AclWI GGATC 1 cut(s) 844
AcoI YGGCCR 2 cut(s) 106, 208
AcsI RAATTY 2 cut(s) 376, 558
AcuI CTGAAG 3 cut(s) 546, 687, 739
AcyI GRCGYC 2 cut(s) 20, 312
AfaI GTAC 5 cut(s) 161, 206, 236, 546, 580
AfiI CCNNNNNNNGG 2 cut(s) 61, 279
AflII CTTAAG 1 cut(s) 511
AflIII ACRYGT 1 cut(s) 780
AjnI CCWGG 1 cut(s) 108
AjuI GAANNNNNNNTTGG 4 cut(s) 323, 355, 824, 856
AluBI AGCT 4 cut(s) 70, 117, 151, 357
AluI AGCT 4 cut(s) 70, 117, 151, 357
Alw21I GWGCWC 2 cut(s) 153, 414
Alw26I GTCTC 2 cut(s) 656, 680
AlwI GGATC 1 cut(s) 844
AoxI GGCC 8 cut(s) 106, 111, 208, 270, 319, 343, 444, 692
ApeKI GCWGC 2 cut(s) 42, 67
ApoI RAATTY 2 cut(s) 376, 558
AspA2I CCTAGG 1 cut(s) 623
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 4 cut(s) 270, 319, 343, 692
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 3 cut(s) 406, 620, 763
AvrII CCTAGG 1 cut(s) 623
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 153, 414
BbvI GCAGC 2 cut(s) 29, 79
BceAI ACGGC 3 cut(s) 223, 229, 405
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 2 cut(s) 141, 433
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 2 cut(s) 656, 680
BfaI CTAG 3 cut(s) 492, 624, 818
BfoI RGCGCY 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 511
BglI GCCNNNNNGGC 1 cut(s) 110
BglII AGATCT 1 cut(s) 476
BisI GCNGC 5 cut(s) 43, 68, 227, 266, 322
BlnI CCTAGG 1 cut(s) 623
BlsI GCNGC 5 cut(s) 44, 69, 228, 267, 323
Bme1390I CCNGG 2 cut(s) 39, 110
BmgT120I GGNCC 4 cut(s) 270, 319, 343, 692
BmrFI CCNGG 2 cut(s) 39, 110
BmrI ACTGGG 2 cut(s) 415, 699
BmsI GCATC 1 cut(s) 817
BmuI ACTGGG 2 cut(s) 415, 699
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 39
BsaHI GRCGYC 2 cut(s) 20, 312
BsaJI CCNNGG 4 cut(s) 60, 211, 322, 623
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 279
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 5 cut(s) 236, 410, 418, 663, 694
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 4 cut(s) 60, 211, 322, 623
BseLI CCNNNNNNNGG 2 cut(s) 61, 279
BseMII CTCAG 3 cut(s) 440, 494, 588
BseNI ACTGG 5 cut(s) 236, 410, 418, 663, 694
BseRI GAGGAG 5 cut(s) 62, 77, 304, 364, 573
BseXI GCAGC 2 cut(s) 29, 79
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 8 cut(s) 108, 113, 210, 272, 321, 345, 446, 694
BsiHKAI GWGCWC 2 cut(s) 153, 414
BsiSI CCGG 4 cut(s) 39, 105, 120, 346
BsiWI CGTACG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 61, 279
BsmAI GTCTC 2 cut(s) 656, 680
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 8 cut(s) 108, 113, 210, 272, 321, 345, 446, 694
Bsp1286I GDGCHC 2 cut(s) 153, 414
Bsp143I GATC 5 cut(s) 141, 433, 476, 646, 849
BspACI CCGC 9 cut(s) 216, 226, 265, 268, 279, 322, 324, 335, 392
BspANI GGCC 8 cut(s) 108, 113, 210, 272, 321, 345, 446, 694
BspCNI CTCAG 3 cut(s) 439, 493, 589
BspFNI CGCG 1 cut(s) 324
BspPI GGATC 1 cut(s) 844
BspTI CTTAAG 1 cut(s) 511
BsrBI CCGCTC 2 cut(s) 265, 279
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 5 cut(s) 236, 410, 418, 663, 694
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 60, 211, 322, 623
BssMI GATC 5 cut(s) 141, 433, 476, 646, 849
BssNI GRCGYC 2 cut(s) 20, 312
BssT1I CCWWGG 1 cut(s) 623
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 7 cut(s) 128, 247, 535, 544, 608, 798, 808
BstACI GRCGYC 2 cut(s) 20, 312
BstAFI CTTAAG 1 cut(s) 511
BstC8I GCNNGC 4 cut(s) 106, 115, 196, 270
BstDEI CTNAG 3 cut(s) 426, 480, 597
BstDSI CCRYGG 2 cut(s) 211, 322
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 5 cut(s) 144, 436, 479, 649, 852
BstMAI GTCTC 2 cut(s) 656, 680
BstMBI GATC 5 cut(s) 141, 433, 476, 646, 849
BstMWI GCNNNNNNNGC 3 cut(s) 110, 114, 129
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 2 cut(s) 37, 108
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 2 cut(s) 29, 79
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 8 cut(s) 108, 113, 210, 272, 321, 345, 446, 694
BtgI CCRYGG 2 cut(s) 211, 322
BtgZI GCGATG 1 cut(s) 21
BtsIMutI CAGTG 3 cut(s) 229, 630, 656
Cac8I GCNNGC 4 cut(s) 106, 115, 196, 270
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 4 cut(s) 270, 319, 343, 692
Cfr42I CCGCGG 1 cut(s) 325
Csp6I GTAC 5 cut(s) 160, 205, 235, 545, 579
CviAII CATG 2 cut(s) 566, 781
CviQI GTAC 5 cut(s) 160, 205, 235, 545, 579
DdeI CTNAG 3 cut(s) 426, 480, 597
DpnI GATC 5 cut(s) 143, 435, 478, 648, 851
DpnII GATC 5 cut(s) 141, 433, 476, 646, 849
EaeI YGGCCR 2 cut(s) 106, 208
EciI GGCGGA 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 623
Eco147I AGGCCT 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 3 cut(s) 546, 687, 739
EcoICRI GAGCTC 1 cut(s) 151
EcoRI GAATTC 2 cut(s) 376, 558
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 623
EcoT22I ATGCAT 1 cut(s) 732
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 623
FaeI CATG 2 cut(s) 569, 784
FaiI YATR 9 cut(s) 135, 192, 360, 423, 567, 588, 762, 782, 791
FaqI GGGAC 1 cut(s) 323
FatI CATG 2 cut(s) 565, 780
FauI CCCGC 2 cut(s) 261, 272
FbaI TGATCA 2 cut(s) 141, 433
Fnu4HI GCNGC 5 cut(s) 43, 68, 227, 266, 322
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 5 cut(s) 43, 68, 227, 266, 322
FspBI CTAG 3 cut(s) 492, 624, 818
GlaI GCGC 1 cut(s) 103
GluI GCNGC 5 cut(s) 43, 68, 227, 266, 322
GsuI CTGGAG 1 cut(s) 680
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 8 cut(s) 108, 113, 210, 272, 321, 345, 446, 694
HapII CCGG 4 cut(s) 39, 105, 120, 346
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 2 cut(s) 20, 312
Hin1II CATG 2 cut(s) 569, 784
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 3 cut(s) 48, 601, 821
HpaII CCGG 4 cut(s) 39, 105, 120, 346
HphI GGTGA 3 cut(s) 406, 620, 763
Hpy188I TCNGA 5 cut(s) 61, 476, 502, 711, 826
Hpy188III TCNNGA 3 cut(s) 596, 685, 847
Hpy99I CGWCG 3 cut(s) 22, 25, 317
HpyAV CCTTC 3 cut(s) 253, 294, 325
HpyCH4III ACNGT 7 cut(s) 128, 247, 535, 544, 608, 798, 808
HpyCH4IV ACGT 4 cut(s) 20, 312, 438, 547
HpyCH4V TGCA 2 cut(s) 730, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 114, 129
HpyF3I CTNAG 3 cut(s) 426, 480, 597
HpySE526I ACGT 4 cut(s) 20, 312, 438, 547
Hsp92I GRCGYC 2 cut(s) 20, 312
Hsp92II CATG 2 cut(s) 569, 784
HspAI GCGC 1 cut(s) 102
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Ksp22I TGATCA 2 cut(s) 141, 433
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 5 cut(s) 141, 433, 476, 646, 849
LmnI GCTCC 5 cut(s) 64, 75, 122, 148, 262
Lsp1109I GCAGC 2 cut(s) 29, 79
LweI GCATC 1 cut(s) 817
MaeI CTAG 3 cut(s) 492, 624, 818
MaeII ACGT 4 cut(s) 20, 312, 438, 547
MaeIII GTNAC 2 cut(s) 548, 608
MalI GATC 5 cut(s) 143, 435, 478, 648, 851
MbiI CCGCTC 2 cut(s) 265, 279
MboI GATC 5 cut(s) 141, 433, 476, 646, 849
MboII GAAGA 1 cut(s) 539
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 2 cut(s) 153, 414
MluCI AATT 3 cut(s) 376, 558, 740
Mph1103I ATGCAT 1 cut(s) 732
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 2 cut(s) 512, 862
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 1 cut(s) 324
MspCI CTTAAG 1 cut(s) 511
MspI CCGG 4 cut(s) 39, 105, 120, 346
MspR9I CCNGG 2 cut(s) 39, 110
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 110, 114, 129
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 39
NdeII GATC 5 cut(s) 141, 433, 476, 646, 849
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 569, 784
NmeAIII GCCGAG 1 cut(s) 488
NmuCI GTSAC 2 cut(s) 548, 608
NsiI ATGCAT 1 cut(s) 732
NspI RCATGY 1 cut(s) 784
PceI AGGCCT 1 cut(s) 446
PciI ACATGT 1 cut(s) 780
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 3 cut(s) 48, 601, 821
Pfl23II CGTACG 1 cut(s) 204
PkrI GCNGC 5 cut(s) 44, 69, 228, 267, 323
PscI ACATGT 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspLI CGTACG 1 cut(s) 204
PspPI GGNCC 4 cut(s) 270, 319, 343, 692
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 5 cut(s) 161, 206, 236, 546, 580
RsaNI GTAC 5 cut(s) 160, 205, 235, 545, 579
RseI CAYNNNNRTG 1 cut(s) 779
SacI GAGCTC 1 cut(s) 153
SacII CCGCGG 1 cut(s) 325
SaqAI TTAA 2 cut(s) 512, 862
SatI GCNGC 5 cut(s) 43, 68, 227, 266, 322
Sau3AI GATC 5 cut(s) 141, 433, 476, 646, 849
Sau96I GGNCC 4 cut(s) 270, 319, 343, 692
ScrFI CCNGG 2 cut(s) 39, 110
SduI GDGCHC 2 cut(s) 153, 414
SfaNI GCATC 1 cut(s) 817
Sfr303I CCGCGG 1 cut(s) 325
SgrBI CCGCGG 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
Sse9I AATT 3 cut(s) 376, 558, 740
SseBI AGGCCT 1 cut(s) 446
SsiI CCGC 9 cut(s) 216, 226, 265, 268, 279, 322, 324, 335, 392
SspMI CTAG 3 cut(s) 492, 624, 818
SstI GAGCTC 1 cut(s) 153
StuI AGGCCT 1 cut(s) 446
StyD4I CCNGG 2 cut(s) 37, 108
StyI CCWWGG 1 cut(s) 623
TaaI ACNGT 7 cut(s) 128, 247, 535, 544, 608, 798, 808
TaiI ACGT 4 cut(s) 23, 315, 441, 550
TaqI TCGA 3 cut(s) 153, 684, 848
TasI AATT 3 cut(s) 376, 558, 740
TatI WGTACW 1 cut(s) 578
TauI GCSGC 3 cut(s) 229, 268, 324
TfiI GAWTC 3 cut(s) 48, 601, 821
Tru1I TTAA 2 cut(s) 512, 862
Tru9I TTAA 2 cut(s) 512, 862
TscAI CASTG 3 cut(s) 236, 637, 663
TseFI GTSAC 2 cut(s) 548, 608
TseI GCWGC 2 cut(s) 42, 67
Tsp45I GTSAC 2 cut(s) 548, 608
TspDTI ATGAA 2 cut(s) 732, 832
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 3 cut(s) 236, 637, 663
Vha464I CTTAAG 1 cut(s) 511
XapI RAATTY 2 cut(s) 376, 558
XceI RCATGY 1 cut(s) 784
XmaJI CCTAGG 1 cut(s) 623
XspI CTAG 3 cut(s) 492, 624, 818
ZraI GACGTC 2 cut(s) 21, 313
Zsp2I ATGCAT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.