Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008124

Physical Location & Seq

Genomic Coordinates Reverse (-)

18205942 .. 18207372

Gene Structure 1431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37254

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCAAAGGGCCTCTTTTGTCCTGTGCCGAGTATTTGTCAGATCTCGGGGTGGAACTAGCAAATCAGAGAATGGCTTAAGTTCTTGTGCTGAAGAAACTGTTTCCACAGTACGTCACATTGGAATTCAGCATGGTGGATTTTGTACTCCTCATATTGTTCCTGAGATTCACAGTGACAAATCTGTGCCTAGGAACACTGACAAGTCAAAAGATCAAATGACACTGGAGACTGAAGTTGATAAGCAAGTCGAGACTGGGCCTCTATCAAGTATTCAGACTAATGAACAGGTGCCGTCATCTGTGCTTGGTGTTGGTAATCCATTGTTGCTTGATGGTTTGGCCACCGAGCATTTACAATCCCTTATGGAGGGAGACTTTATAGAGTTGGATGATCTCATCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

134

Amino Acids

14.58

Weight (kDa)

4.89

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008124)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34080 FvH4_2g34080 FvH4_2g34080 FvH4_2g34080
malus_domestica	MD08G1096700.v1.1 MD15G1079400.v1.1
prunus_persica	Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1
pyrus_communis	pycom08g07910 pycom15g07400
rosa_chinensis	RchiOBHm_Chr4g0400531 RchiOBHm_Chr4g0400541 RchiOBHm_Chr6g0308271
rosa_laevigata	RLG00000010652
rosa_multiflora	Rmu_ssc0000355.1_g000009
rosa_roxburghii	Rroxscaffold_7G00160300
rosa_rugosa	Rorug06G0365900
rosa_samantha	Rh4CG109900 Rh6AG474700 Rh6BG485300 Rh6CG490400 Rh6DG476800
rosa_wichuraiana	Rw6G041400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	123
AcuI	CTGAAG	2 cut(s)	111, 252
AfaI	GTAC	2 cut(s)	111, 145
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflII	CTTAAG	1 cut(s)	76
Alw26I	GTCTC	3 cut(s)	221, 245, 366
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	3 cut(s)	9, 257, 339
ApoI	RAATTY	1 cut(s)	123
AspA2I	CCTAGG	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	9, 257
AvaI	CYCGRG	1 cut(s)	45
AvrII	CCTAGG	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	289
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	1 cut(s)	277
BcoDI	GTCTC	3 cut(s)	221, 245, 366
BfaI	CTAG	2 cut(s)	57, 189
BfrI	CTTAAG	1 cut(s)	76
BglII	AGATCT	1 cut(s)	41
BlnI	CCTAGG	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	45
BmgT120I	GGNCC	2 cut(s)	9, 257
BmiI	GGNNCC	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	228, 259
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	228, 259
BseRI	GAGGAG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	11, 259, 341
BshNI	GGYRCC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	3 cut(s)	221, 245, 366
BsnI	GGCC	3 cut(s)	11, 259, 341
BsoBI	CYCGRG	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	41, 211, 391
BspANI	GGCC	3 cut(s)	11, 259, 341
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	228, 259
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	3 cut(s)	41, 211, 391
BssT1I	CCWWGG	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	100, 109, 173
BstAFI	CTTAAG	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	3 cut(s)	44, 214, 394
BstMAI	GTCTC	3 cut(s)	221, 245, 366
BstMBI	GATC	3 cut(s)	41, 211, 391
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	3 cut(s)	11, 259, 341
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	3 cut(s)	178, 195, 221
Cfr13I	GGNCC	2 cut(s)	9, 257
Csp6I	GTAC	2 cut(s)	110, 144
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	4 cut(s)	11, 75, 259, 341
CviKI_1	RGCY	4 cut(s)	11, 75, 259, 341
CviQI	GTAC	2 cut(s)	110, 144
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	3 cut(s)	43, 213, 393
DpnII	GATC	3 cut(s)	41, 211, 391
EaeI	YGGCCR	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	188
Eco57I	CTGAAG	2 cut(s)	111, 252
Eco88I	CYCGRG	1 cut(s)	45
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	1 cut(s)	134
FaiI	YATR	4 cut(s)	132, 153, 365, 380
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	1 cut(s)	130
FokI	GGATG	1 cut(s)	401
FspBI	CTAG	2 cut(s)	57, 189
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	11, 259, 341
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	41, 67, 276
Hpy188III	TCNNGA	2 cut(s)	161, 250
HpyCH4III	ACNGT	3 cut(s)	100, 109, 173
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	41, 211, 391
LpnPI	CCDG	5 cut(s)	35, 174, 209, 240, 272
MaeI	CTAG	2 cut(s)	57, 189
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	2 cut(s)	113, 173
MalI	GATC	3 cut(s)	43, 213, 393
MboI	GATC	3 cut(s)	41, 211, 391
MboII	GAAGA	1 cut(s)	104
MflI	RGATCY	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	1 cut(s)	123
MluNI	TGGCCA	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	4 cut(s)	22, 159, 270, 361
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	341
MspCI	CTTAAG	1 cut(s)	76
NdeII	GATC	3 cut(s)	41, 211, 391
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	291
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	113, 173
PfeI	GAWTC	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	9, 257
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	2 cut(s)	111, 145
RsaNI	GTAC	2 cut(s)	110, 144
SaqAI	TTAA	1 cut(s)	77
Sau3AI	GATC	3 cut(s)	41, 211, 391
Sau96I	GGNCC	2 cut(s)	9, 257
SetI	ASST	2 cut(s)	115, 291
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	1 cut(s)	123
SspMI	CTAG	2 cut(s)	57, 189
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	100, 109, 173
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	2 cut(s)	249, 399
TasI	AATT	1 cut(s)	123
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	3 cut(s)	178, 202, 228
TseFI	GTSAC	2 cut(s)	113, 173
Tsp45I	GTSAC	2 cut(s)	113, 173
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	3 cut(s)	178, 202, 228
Vha464I	CTTAAG	1 cut(s)	76
XagI	CCTNNNNNAGG	1 cut(s)	365
XapI	RAATTY	1 cut(s)	123
XmaJI	CCTAGG	1 cut(s)	188
XspI	CTAG	2 cut(s)	57, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.