Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008124

Physical Location & Seq

Genomic Coordinates Forward (+)

51329196 .. 51330854

Gene Structure 1659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0365900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAATAACAGATCTGAAACTTTCCCAATATTGTTGTTTAGCATAGTGAAGTTGTCCTTCAGTGTCCAAGAAATGTCCATCAAAGGTGATGAACCACCCCCTGAATACATTGTTAAAGAAAGCAAGTTTGGAGCTATAGAGTCTTCCCCAGAATTGGGTCGAATCCCCATCATTGATGTCAGTCTCTTCTCCCCACCATCAATTGATACTAAGGAAGCAGAGATTGAACTAAACAAACTCAGAGCAGCTCTCAGCTCATCAGGCTGCTTCCAGGTAATAGGTCATGGGATTTCAAGTTCCTTTTTGGACAAGGTACGCGAAGCTGCAAAACAATTCTTTGACCTTCCAGTGGAAGAGAAGCAAAGATACTCTAGAGAAATTTATGGTGGCCGTGAAGGATATGGGGAGGATGCCATTGTCTCAGAGAAGCAAATTCGTGATTGGTCCTACCGCCTAATTCTTCGTGTATTTCCTGAAGATCAAAGAAGGCTCAATCTCTGGCCAGAAAATCCAAATGATTTTGGAGAAGTTGTACATGATTATGCAACAAAGGTGAAGTTTATGATGGATGTTCTGTTTAAGGCCATGGCCATATCTTTGAATTTGCAAGAGAACAGCTTTTCGGATAAGCTGTTTGGAGAGCAAGCTCAGATGATAGCAAGATTCAACTTCTTTCCGCGGTGTTCAAGGCCTGATCAGGTGTTTGGTGTGAAGCCACATACAGATGGGACAGGATTAACTTTTCTGTTGCAGGACAAAGAAGTAGAGGGTCTTCAAGTTTTGGTGGATGGTAAATGGGTTAGAGTCCCCATTGTGACACATGCCATTTTTGTTAATCTTGGTGCTCAAATGCAAATTATGAGTAATGACATATTCAAGAGCCCACTGCACAGGGTGGTGACAAATCCAGAAAGAATGAGGCTATCTGTGGCCTTGCTTAATGTACCAGATCCTGAAACCGAGATTGGTCCAGTGGAGAAACTGATAGATGAGACAAGGCCAAGGATATACAAAAATGTCAAGAACTATTCCAGTATTAACTATAAGTGCTTTCAGAGAGGAGAAGTAGCACTTGAAACATTAAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

363

Amino Acids

41.42

Weight (kDa)

5.74

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	55 - 170	1e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	219 - 312	3.6e-27	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008124)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34080 FvH4_2g34080 FvH4_2g34080 FvH4_2g34080
malus_domestica	MD08G1096700.v1.1 MD15G1079400.v1.1
prunus_persica	Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1
pyrus_communis	pycom08g07910 pycom15g07400
rosa_chinensis	RchiOBHm_Chr4g0400531 RchiOBHm_Chr4g0400541 RchiOBHm_Chr6g0308271
rosa_laevigata	RLG00000010652
rosa_multiflora	Rmu_ssc0000355.1_g000009
rosa_roxburghii	Rroxscaffold_7G00160300
rosa_rugosa	Rorug06G0365900
rosa_samantha	Rh4CG109900 Rh6AG474700 Rh6BG485300 Rh6CG490400 Rh6DG476800
rosa_wichuraiana	Rw6G041400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	318, 679
AciI	CCGC	3 cut(s)	451, 677, 679
AclWI	GGATC	1 cut(s)	944
AcoI	YGGCCR	3 cut(s)	388, 500, 588
AcsI	RAATTY	3 cut(s)	378, 432, 601
AcuI	CTGAAG	2 cut(s)	43, 495
AdeI	CACNNNGTG	1 cut(s)	895
AfaI	GTAC	3 cut(s)	315, 534, 945
AfiI	CCNNNNNNNGG	3 cut(s)	154, 155, 349
AgsI	TTSAA	8 cut(s)	227, 294, 601, 667, 687, 776, 877, 1076
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	4 cut(s)	111, 143, 948, 980
AloI	GAACNNNNNNTCC	2 cut(s)	280, 312
AluBI	AGCT	7 cut(s)	134, 248, 255, 323, 618, 631, 647
AluI	AGCT	7 cut(s)	134, 248, 255, 323, 618, 631, 647
Alw21I	GWGCWC	1 cut(s)	847
Alw26I	GTCTC	3 cut(s)	188, 424, 986
AlwI	GGATC	1 cut(s)	944
AlwNI	CAGNNNCTG	1 cut(s)	953
AoxI	GGCC	7 cut(s)	388, 500, 582, 588, 689, 930, 998
ApeKI	GCWGC	3 cut(s)	245, 264, 323
ApoI	RAATTY	3 cut(s)	378, 432, 601
AspS9I	GGNCC	2 cut(s)	444, 968
AsuHPI	GGTGA	3 cut(s)	98, 565, 910
AvaII	GGWCC	2 cut(s)	444, 968
BalI	TGGCCA	2 cut(s)	502, 590
BanII	GRGCYC	1 cut(s)	884
BarI	GAAGNNNNNNTAC	4 cut(s)	350, 382, 756, 788
BbsI	GAAGAC	2 cut(s)	135, 764
Bbv12I	GWGCWC	1 cut(s)	847
BbvI	GCAGC	3 cut(s)	251, 257, 310
BccI	CCATC	6 cut(s)	86, 176, 205, 559, 719, 782
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	1 cut(s)	272
BclI	TGATCA	1 cut(s)	694
BcoDI	GTCTC	3 cut(s)	188, 424, 986
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	135
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	3 cut(s)	246, 265, 324
BlsI	GCNGC	3 cut(s)	247, 266, 325
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	444, 968
BmgT120I	GGNCC	2 cut(s)	444, 968
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	2 cut(s)	135, 764
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BsaJI	CCNNGG	3 cut(s)	585, 677, 1001
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 155, 349
Bse1I	ACTGG	3 cut(s)	347, 971, 1032
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	3 cut(s)	585, 677, 1001
BseGI	GGATG	3 cut(s)	415, 574, 793
BseLI	CCNNNNNNNGG	3 cut(s)	154, 155, 349
BseMII	CTCAG	4 cut(s)	253, 265, 435, 662
BseNI	ACTGG	3 cut(s)	347, 971, 1032
BseRI	GAGGAG	1 cut(s)	1074
BseXI	GCAGC	3 cut(s)	251, 257, 310
BsgI	GTGCAG	1 cut(s)	872
Bsh1236I	CGCG	2 cut(s)	318, 679
BshFI	GGCC	7 cut(s)	390, 502, 584, 590, 691, 932, 1000
BsiHKAI	GWGCWC	1 cut(s)	847
BslFI	GGGAC	2 cut(s)	742, 791
BslI	CCNNNNNNNGG	3 cut(s)	154, 155, 349
BsmAI	GTCTC	3 cut(s)	188, 424, 986
BsmFI	GGGAC	2 cut(s)	742, 791
BsnI	GGCC	7 cut(s)	390, 502, 584, 590, 691, 932, 1000
Bsp1286I	GDGCHC	2 cut(s)	847, 884
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	11, 478, 694, 949
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	3 cut(s)	451, 677, 679
BspANI	GGCC	7 cut(s)	390, 502, 584, 590, 691, 932, 1000
BspCNI	CTCAG	4 cut(s)	252, 264, 434, 661
BspFNI	CGCG	2 cut(s)	318, 679
BspPI	GGATC	1 cut(s)	944
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	347, 971, 1032
BssECI	CCNNGG	3 cut(s)	585, 677, 1001
BssMI	GATC	4 cut(s)	11, 478, 694, 949
BssT1I	CCWWGG	2 cut(s)	585, 1001
Bst2UI	CCWGG	1 cut(s)	272
Bst6I	CTCTTC	2 cut(s)	191, 348
BstAUI	TGTACA	1 cut(s)	532
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	5 cut(s)	210, 239, 251, 421, 648
BstDSI	CCRYGG	2 cut(s)	585, 677
BstF5I	GGATG	3 cut(s)	415, 574, 793
BstFNI	CGCG	2 cut(s)	318, 679
BstKTI	GATC	4 cut(s)	14, 481, 697, 952
BstMAI	GTCTC	3 cut(s)	188, 424, 986
BstMBI	GATC	4 cut(s)	11, 478, 694, 949
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	824
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	2 cut(s)	318, 679
BstV1I	GCAGC	3 cut(s)	251, 257, 310
BstV2I	GAAGAC	2 cut(s)	135, 764
BstX2I	RGATCY	2 cut(s)	11, 949
BstYI	RGATCY	2 cut(s)	11, 949
BsuRI	GGCC	7 cut(s)	390, 502, 584, 590, 691, 932, 1000
BtgI	CCRYGG	2 cut(s)	585, 677
BtsCI	GGATG	3 cut(s)	415, 574, 793
BtsI	GCAGTG	1 cut(s)	884
BtsIMutI	CAGTG	4 cut(s)	67, 354, 884, 978
Cac8I	GCNNGC	1 cut(s)	645
CaiI	CAGNNNCTG	1 cut(s)	953
Cfr13I	GGNCC	2 cut(s)	444, 968
Cfr42I	CCGCGG	1 cut(s)	680
Csp6I	GTAC	3 cut(s)	314, 533, 944
CviAII	CATG	4 cut(s)	284, 536, 586, 821
CviQI	GTAC	3 cut(s)	314, 533, 944
DdeI	CTNAG	5 cut(s)	210, 239, 251, 421, 648
DpnI	GATC	4 cut(s)	13, 480, 696, 951
DpnII	GATC	4 cut(s)	11, 478, 694, 949
DraIII	CACNNNGTG	1 cut(s)	895
EaeI	YGGCCR	3 cut(s)	388, 500, 588
Eam1104I	CTCTTC	2 cut(s)	191, 348
EarI	CTCTTC	2 cut(s)	191, 348
Eco130I	CCWWGG	2 cut(s)	585, 1001
Eco147I	AGGCCT	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	884
Eco47I	GGWCC	2 cut(s)	444, 968
Eco57I	CTGAAG	2 cut(s)	43, 495
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	585, 1001
EcoT38I	GRGCYC	1 cut(s)	884
ErhI	CCWWGG	2 cut(s)	585, 1001
FaeI	CATG	4 cut(s)	287, 539, 589, 824
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 1056, 1088
FaqI	GGGAC	2 cut(s)	742, 791
FatI	CATG	4 cut(s)	283, 535, 585, 820
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	3 cut(s)	246, 265, 324
FokI	GGATG	3 cut(s)	422, 581, 800
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	3 cut(s)	246, 265, 324
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	3 cut(s)	246, 265, 324
HaeIII	GGCC	7 cut(s)	390, 502, 584, 590, 691, 932, 1000
Hin1II	CATG	4 cut(s)	287, 539, 589, 824
HinfI	GANTC	4 cut(s)	140, 162, 663, 804
HphI	GGTGA	3 cut(s)	98, 565, 910
Hpy188I	TCNGA	6 cut(s)	16, 242, 424, 625, 651, 1056
Hpy188III	TCNNGA	7 cut(s)	372, 437, 473, 877, 908, 953, 1021
HpyAV	CCTTC	4 cut(s)	67, 353, 389, 480
HpyCH4V	TGCA	6 cut(s)	326, 545, 607, 751, 853, 889
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	5 cut(s)	210, 239, 251, 421, 648
Hsp92II	CATG	4 cut(s)	287, 539, 589, 824
Ksp22I	TGATCA	1 cut(s)	694
KspI	CCGCGG	1 cut(s)	680
Kzo9I	GATC	4 cut(s)	11, 478, 694, 949
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	3 cut(s)	251, 257, 310
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	2 cut(s)	814, 898
MalI	GATC	4 cut(s)	13, 480, 696, 951
MboI	GATC	4 cut(s)	11, 478, 694, 949
MboII	GAAGA	6 cut(s)	135, 178, 365, 452, 488, 764
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	2 cut(s)	11, 949
MhlI	GDGCHC	2 cut(s)	847, 884
MlsI	TGGCCA	2 cut(s)	502, 590
MluCI	AATT	8 cut(s)	152, 201, 332, 378, 432, 456, 601, 855
MluNI	TGGCCA	2 cut(s)	502, 590
MlyI	GAGTC	2 cut(s)	149, 813
MnlI	CCTC	4 cut(s)	400, 760, 912, 1052
Mox20I	TGGCCA	2 cut(s)	502, 590
MscI	TGGCCA	2 cut(s)	502, 590
MseI	TTAA	7 cut(s)	114, 579, 737, 834, 939, 1038, 1082
MslI	CAYNNNNRTG	2 cut(s)	540, 723
Msp20I	TGGCCA	2 cut(s)	502, 590
MspA1I	CMGCKG	1 cut(s)	679
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	2 cut(s)	318, 679
MwoI	GCNNNNNNNGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	4 cut(s)	11, 478, 694, 949
NlaIII	CATG	4 cut(s)	287, 539, 589, 824
NmuCI	GTSAC	2 cut(s)	814, 898
NspI	RCATGY	1 cut(s)	824
PceI	AGGCCT	1 cut(s)	691
PfeI	GAWTC	2 cut(s)	162, 663
PkrI	GCNGC	3 cut(s)	247, 266, 325
PleI	GAGTC	2 cut(s)	148, 812
PpsI	GAGTC	2 cut(s)	148, 812
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspPI	GGNCC	2 cut(s)	444, 968
PstNI	CAGNNNCTG	1 cut(s)	953
PsuI	RGATCY	2 cut(s)	11, 949
RsaI	GTAC	3 cut(s)	315, 534, 945
RsaNI	GTAC	3 cut(s)	314, 533, 944
RseI	CAYNNNNRTG	2 cut(s)	540, 723
SacII	CCGCGG	1 cut(s)	680
SaqAI	TTAA	7 cut(s)	114, 579, 737, 834, 939, 1038, 1082
SatI	GCNGC	3 cut(s)	246, 265, 324
Sau3AI	GATC	4 cut(s)	11, 478, 694, 949
Sau96I	GGNCC	2 cut(s)	444, 968
SchI	GAGTC	2 cut(s)	149, 813
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	2 cut(s)	847, 884
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	135
Sfr303I	CCGCGG	1 cut(s)	680
SgrBI	CCGCGG	1 cut(s)	680
SinI	GGWCC	2 cut(s)	444, 968
SmiMI	CAYNNNNRTG	2 cut(s)	540, 723
Sse9I	AATT	8 cut(s)	152, 201, 332, 378, 432, 456, 601, 855
SseBI	AGGCCT	1 cut(s)	691
SsiI	CCGC	3 cut(s)	451, 677, 679
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	1 cut(s)	372
StuI	AGGCCT	1 cut(s)	691
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	2 cut(s)	585, 1001
TaqI	TCGA	1 cut(s)	160
TasI	AATT	8 cut(s)	152, 201, 332, 378, 432, 456, 601, 855
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	2 cut(s)	162, 663
Tru1I	TTAA	7 cut(s)	114, 579, 737, 834, 939, 1038, 1082
Tru9I	TTAA	7 cut(s)	114, 579, 737, 834, 939, 1038, 1082
TscAI	CASTG	4 cut(s)	67, 354, 891, 978
TseFI	GTSAC	2 cut(s)	814, 898
TseI	GCWGC	3 cut(s)	245, 264, 323
Tsp45I	GTSAC	2 cut(s)	814, 898
TspDTI	ATGAA	2 cut(s)	17, 105
TspRI	CASTG	4 cut(s)	67, 354, 891, 978
VpaK11BI	GGWCC	2 cut(s)	444, 968
XapI	RAATTY	3 cut(s)	378, 432, 601
XbaI	TCTAGA	1 cut(s)	371
XceI	RCATGY	1 cut(s)	824
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.