Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008124

Physical Location & Seq

Genomic Coordinates Forward (+)

18219603 .. 18220165

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGCGATGCCAAAGCGACGTCGTATTACCTCCCTCCCGGCTGCCGATTCTACCCCTCCGAGGAGCAGCTCCTCTGCTACTACCTCTCCCACAAGAACGGCGCCGGCCAGGCCAGCTCCGGGAACGGTGGATATGATTTGATCAAGGAGCTCGACTTGTACGACCACGACCCCTTTGATTTGCCCGACTATGCCTGCTACTCGTACGGCCACGGCGGACGGAGGCGGCACTGGTACTGCTACACGGTTAGGGTTGTGAAGGAGCGACGGGCCAAGAGCGGGTATTGGAGGAGGAAAGGAAGGGTTAGGGACGTCGTGGGCCGCGGAGGGAATGCCGTGTTGGGCCGGAGGAGTAGCTATGAGTTTTATTTGGGGAGTTCGCCCAAGACGGCGGTGAGGACTGACTGGGTGCTCTATCAGTATGCTCGGGTTGATCACGTTCAGGTGGAATTGTTTCGGAACCAAGCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

157

Amino Acids

18.09

Weight (kDa)

9.33

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 142	2.1e-22	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008124)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34080 FvH4_2g34080 FvH4_2g34080 FvH4_2g34080
malus_domestica	MD08G1096700.v1.1 MD15G1079400.v1.1
prunus_persica	Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1
pyrus_communis	pycom08g07910 pycom15g07400
rosa_chinensis	RchiOBHm_Chr4g0400531 RchiOBHm_Chr4g0400541 RchiOBHm_Chr6g0308271
rosa_laevigata	RLG00000010652
rosa_multiflora	Rmu_ssc0000355.1_g000009
rosa_roxburghii	Rroxscaffold_7G00160300
rosa_rugosa	Rorug06G0365900
rosa_samantha	Rh4CG109900 Rh6AG474700 Rh6BG485300 Rh6CG490400 Rh6DG476800
rosa_wichuraiana	Rw6G041400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	23, 315
AccB1I	GGYRCC	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	279
AccII	CGCG	1 cut(s)	324
AciI	CCGC	6 cut(s)	216, 226, 279, 322, 324, 392
AcoI	YGGCCR	2 cut(s)	106, 208
AcyI	GRCGYC	3 cut(s)	20, 102, 312
AfaI	GTAC	3 cut(s)	161, 206, 236
AfiI	CCNNNNNNNGG	3 cut(s)	61, 120, 279
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	5 cut(s)	70, 117, 151, 357, 467
AluI	AGCT	5 cut(s)	70, 117, 151, 357, 467
Alw21I	GWGCWC	2 cut(s)	153, 414
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	6 cut(s)	106, 111, 208, 270, 319, 343
ApeKI	GCWGC	2 cut(s)	42, 67
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	3 cut(s)	270, 319, 343
AsuC2I	CCSGG	2 cut(s)	39, 121
AsuHPI	GGTGA	1 cut(s)	406
AvaI	CYCGRG	1 cut(s)	426
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	153, 414
BbvI	GCAGC	2 cut(s)	29, 79
BceAI	ACGGC	5 cut(s)	115, 223, 229, 320, 405
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	2 cut(s)	141, 433
BcnI	CCSGG	2 cut(s)	39, 121
BfoI	RGCGCY	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	110
BisI	GCNGC	4 cut(s)	43, 68, 227, 322
BlsI	GCNGC	4 cut(s)	44, 69, 228, 323
Bme1390I	CCNGG	3 cut(s)	39, 110, 121
BmeT110I	CYCGRG	1 cut(s)	426
BmgT120I	GGNCC	3 cut(s)	270, 319, 343
BmiI	GGNNCC	2 cut(s)	103, 461
BmrFI	CCNGG	3 cut(s)	39, 110, 121
BmrI	ACTGGG	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	415
BpuMI	CCSGG	2 cut(s)	39, 121
BsaHI	GRCGYC	3 cut(s)	20, 102, 312
BsaJI	CCNNGG	3 cut(s)	60, 211, 322
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 120, 279
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	236, 410
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	3 cut(s)	60, 211, 322
BseLI	CCNNNNNNNGG	3 cut(s)	61, 120, 279
BseNI	ACTGG	2 cut(s)	236, 410
BseRI	GAGGAG	4 cut(s)	62, 77, 304, 364
BseXI	GCAGC	2 cut(s)	29, 79
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	6 cut(s)	108, 113, 210, 272, 321, 345
BshNI	GGYRCC	1 cut(s)	101
BsiHKAI	GWGCWC	2 cut(s)	153, 414
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	4 cut(s)	39, 105, 120, 346
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	61, 120, 279
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	6 cut(s)	108, 113, 210, 272, 321, 345
BsoBI	CYCGRG	1 cut(s)	426
Bsp1286I	GDGCHC	2 cut(s)	153, 414
Bsp143I	GATC	2 cut(s)	141, 433
BspACI	CCGC	6 cut(s)	216, 226, 279, 322, 324, 392
BspANI	GGCC	6 cut(s)	108, 113, 210, 272, 321, 345
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	103, 461
BspT107I	GGYRCC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	236, 410
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	3 cut(s)	60, 211, 322
BssMI	GATC	2 cut(s)	141, 433
BssNI	GRCGYC	3 cut(s)	20, 102, 312
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	128, 247
BstACI	GRCGYC	3 cut(s)	20, 102, 312
BstC8I	GCNNGC	3 cut(s)	106, 115, 196
BstDSI	CCRYGG	2 cut(s)	211, 322
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	2 cut(s)	144, 436
BstMBI	GATC	2 cut(s)	141, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 114
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	37, 108, 119
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	29, 79
BsuRI	GGCC	6 cut(s)	108, 113, 210, 272, 321, 345
BtgI	CCRYGG	2 cut(s)	211, 322
BtgZI	GCGATG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	3 cut(s)	106, 115, 196
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	3 cut(s)	270, 319, 343
Cfr42I	CCGCGG	1 cut(s)	325
Csp6I	GTAC	3 cut(s)	160, 205, 235
CviQI	GTAC	3 cut(s)	160, 205, 235
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	2 cut(s)	143, 435
DpnII	GATC	2 cut(s)	141, 433
EaeI	YGGCCR	2 cut(s)	106, 208
EciI	GGCGGA	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	426
EcoICRI	GAGCTC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
FaiI	YATR	4 cut(s)	135, 192, 360, 423
FaqI	GGGAC	1 cut(s)	323
FauI	CCCGC	1 cut(s)	272
FbaI	TGATCA	2 cut(s)	141, 433
Fnu4HI	GCNGC	4 cut(s)	43, 68, 227, 322
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	4 cut(s)	43, 68, 227, 322
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	4 cut(s)	43, 68, 227, 322
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	6 cut(s)	108, 113, 210, 272, 321, 345
HapII	CCGG	4 cut(s)	39, 105, 120, 346
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	3 cut(s)	20, 102, 312
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	4 cut(s)	39, 105, 120, 346
HphI	GGTGA	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	61, 459
Hpy99I	CGWCG	4 cut(s)	22, 25, 270, 317
HpyAV	CCTTC	2 cut(s)	253, 294
HpyCH4III	ACNGT	2 cut(s)	128, 247
HpyCH4IV	ACGT	3 cut(s)	20, 312, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 114
HpySE526I	ACGT	3 cut(s)	20, 312, 438
Hsp92I	GRCGYC	3 cut(s)	20, 102, 312
HspAI	GCGC	1 cut(s)	102
KasI	GGCGCC	1 cut(s)	101
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	2 cut(s)	141, 433
KspI	CCGCGG	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	141, 433
LmnI	GCTCC	5 cut(s)	64, 75, 122, 148, 262
Lsp1109I	GCAGC	2 cut(s)	29, 79
MaeII	ACGT	3 cut(s)	20, 312, 438
MalI	GATC	2 cut(s)	143, 435
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	2 cut(s)	141, 433
MhlI	GDGCHC	2 cut(s)	153, 414
MluCI	AATT	1 cut(s)	449
Mly113I	GGCGCC	1 cut(s)	102
MroNI	GCCGGC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	324
MspI	CCGG	4 cut(s)	39, 105, 120, 346
MspR9I	CCNGG	3 cut(s)	39, 110, 121
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	2 cut(s)	110, 114
NaeI	GCCGGC	1 cut(s)	106
NarI	GGCGCC	1 cut(s)	102
NciI	CCSGG	2 cut(s)	39, 121
NdeII	GATC	2 cut(s)	141, 433
NgoMIV	GCCGGC	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	103, 461
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	337
PdiI	GCCGGC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	48
Pfl23II	CGTACG	1 cut(s)	204
PfoI	TCCNGGA	1 cut(s)	119
PkrI	GCNGC	4 cut(s)	44, 69, 228, 323
PluTI	GGCGCC	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspLI	CGTACG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	103, 461
PspPI	GGNCC	3 cut(s)	270, 319, 343
RsaI	GTAC	3 cut(s)	161, 206, 236
RsaNI	GTAC	3 cut(s)	160, 205, 235
SacI	GAGCTC	1 cut(s)	153
SacII	CCGCGG	1 cut(s)	325
SatI	GCNGC	4 cut(s)	43, 68, 227, 322
Sau3AI	GATC	2 cut(s)	141, 433
Sau96I	GGNCC	3 cut(s)	270, 319, 343
ScrFI	CCNGG	3 cut(s)	39, 110, 121
SduI	GDGCHC	2 cut(s)	153, 414
SfoI	GGCGCC	1 cut(s)	103
Sfr303I	CCGCGG	1 cut(s)	325
SgrBI	CCGCGG	1 cut(s)	325
Sse9I	AATT	1 cut(s)	449
SsiI	CCGC	6 cut(s)	216, 226, 279, 322, 324, 392
SspDI	GGCGCC	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	37, 108, 119
TaaI	ACNGT	2 cut(s)	128, 247
TaiI	ACGT	3 cut(s)	23, 315, 441
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	449
TauI	GCSGC	2 cut(s)	229, 324
TfiI	GAWTC	1 cut(s)	48
TscAI	CASTG	1 cut(s)	236
TseI	GCWGC	2 cut(s)	42, 67
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	453
ZraI	GACGTC	2 cut(s)	21, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.