Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008124

Physical Location & Seq

Genomic Coordinates Forward (+)

3295688 .. 3299252

Gene Structure 3565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGCGATTCCAAAGCGACGTCGTATTACCTCCCTCCCGGCTGCCAATTCTACCCCTCCGAGGAGCAGCTCCTCGGCTACTACCTCTCCCACAAGAACAGCGCCGGCCAGGCCAGCTCCGGCAACGGTGGCTATGATTTGATCAAGGAGCTCGACTTGTACGGCCACGACCCCTTTGATTTGCCCGACTATGCCTGCTACTCGTACGGCCACGGCGGCCTGAGGCGGCACTGGTACTGCTACACGGTTAGGGTTGTGAAGGAGCGGCGGGCCAGGAGCGGGTATTGGAGGAGGAAAGGAAGGGTTAGGGACGTCGTGGGCCTCGGAGGGAAGGCGGTGTTGGGCCGGAGGAGTAGCTATGAGTTTTATTTGGGGAATTCGCCCAAGACGGCGGTGAGGACTGACTGGGTGCTCTATCAGTATGCTCAGGTTGATCACGTTCAGGCCTCTTTTGTCCTGTGCCGAGTATTTGTCAGATCTCAGGGTGGAACTAGCAAATCAGAGAATGGCTTAAGTTCCTGTGCTGAAGAAACTGTTTCCACAGTACGTCACATTGGAATTCAGCGTGATGGTTTTGGTACTCCTCATATTGTTCCTGAGATTCACGGTGACAAATCTGTGCCTAGGAACACTGACAAGTCAAAAGATCAAATGACACGGGAGACTGAAGTTGATAAGCAAGTCGAGACTGGGCCTCTATCAAGTATACAGACTAATGAACAGGTGCCGTCATCTGTGCTCGGTGTTAGTAATCCATTGTTGCTTGATGGTTTGGCCACCGAGCATTTACTATCCCTTATAGAGGGAGACTTTATAGAGTTGGATGATCTCATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

279

Amino Acids

31.1

Weight (kDa)

6.15

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 142	2.6e-20	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008124)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34080 FvH4_2g34080 FvH4_2g34080 FvH4_2g34080
malus_domestica	MD08G1096700.v1.1 MD15G1079400.v1.1
prunus_persica	Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1
pyrus_communis	pycom08g07910 pycom15g07400
rosa_chinensis	RchiOBHm_Chr4g0400531 RchiOBHm_Chr4g0400541 RchiOBHm_Chr6g0308271
rosa_laevigata	RLG00000010652
rosa_multiflora	Rmu_ssc0000355.1_g000009
rosa_roxburghii	Rroxscaffold_7G00160300
rosa_rugosa	Rorug06G0365900
rosa_samantha	Rh4CG109900 Rh6AG474700 Rh6BG485300 Rh6CG490400 Rh6DG476800
rosa_wichuraiana	Rw6G041400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	23, 315
AccB1I	GGYRCC	1 cut(s)	724
AccBSI	CCGCTC	2 cut(s)	265, 279
AccI	GTMKAC	1 cut(s)	706
AciI	CCGC	7 cut(s)	216, 226, 265, 268, 279, 335, 392
AcoI	YGGCCR	4 cut(s)	106, 163, 208, 774
AcsI	RAATTY	2 cut(s)	376, 558
AcuI	CTGAAG	2 cut(s)	546, 687
AcyI	GRCGYC	2 cut(s)	20, 312
AfaI	GTAC	5 cut(s)	161, 206, 236, 546, 580
AfiI	CCNNNNNNNGG	3 cut(s)	61, 279, 802
AflII	CTTAAG	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	108, 272
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	4 cut(s)	70, 117, 151, 357
AluI	AGCT	4 cut(s)	70, 117, 151, 357
Alw21I	GWGCWC	3 cut(s)	153, 414, 741
Alw26I	GTCTC	3 cut(s)	656, 680, 801
ApeKI	GCWGC	2 cut(s)	42, 67
ApoI	RAATTY	2 cut(s)	376, 558
AspA2I	CCTAGG	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	4 cut(s)	270, 319, 343, 692
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	406, 620
AvrII	CCTAGG	1 cut(s)	623
AxyI	CCTNAGG	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	776
BanI	GGYRCC	1 cut(s)	724
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	3 cut(s)	153, 414, 741
BbvI	GCAGC	2 cut(s)	29, 79
BccI	CCATC	2 cut(s)	563, 761
BceAI	ACGGC	5 cut(s)	178, 223, 229, 405, 712
BciT130I	CCWGG	2 cut(s)	110, 274
BclI	TGATCA	2 cut(s)	141, 433
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	3 cut(s)	656, 680, 801
BfaI	CTAG	2 cut(s)	492, 624
BfoI	RGCGCY	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	511
BglI	GCCNNNNNGGC	2 cut(s)	110, 216
BglII	AGATCT	1 cut(s)	476
BisI	GCNGC	5 cut(s)	43, 68, 217, 227, 266
BlnI	CCTAGG	1 cut(s)	623
BlsI	GCNGC	5 cut(s)	44, 69, 218, 228, 267
Bme1390I	CCNGG	3 cut(s)	39, 110, 274
BmgT120I	GGNCC	4 cut(s)	270, 319, 343, 692
BmiI	GGNNCC	1 cut(s)	726
BmrFI	CCNGG	3 cut(s)	39, 110, 274
BmrI	ACTGGG	2 cut(s)	415, 699
BmuI	ACTGGG	2 cut(s)	415, 699
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	39
BsaHI	GRCGYC	2 cut(s)	20, 312
BsaJI	CCNNGG	5 cut(s)	60, 73, 211, 322, 623
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 279, 802
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	3 cut(s)	236, 410, 694
Bse21I	CCTNAGG	1 cut(s)	221
BseBI	CCWGG	2 cut(s)	110, 274
BseDI	CCNNGG	5 cut(s)	60, 73, 211, 322, 623
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	3 cut(s)	61, 279, 802
BseMII	CTCAG	4 cut(s)	212, 440, 494, 588
BseNI	ACTGG	3 cut(s)	236, 410, 694
BseRI	GAGGAG	5 cut(s)	62, 77, 304, 364, 573
BseXI	GCAGC	2 cut(s)	29, 79
BshNI	GGYRCC	1 cut(s)	724
BsiHKAI	GWGCWC	3 cut(s)	153, 414, 741
BsiSI	CCGG	4 cut(s)	39, 105, 120, 346
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	61, 279, 802
BsmAI	GTCTC	3 cut(s)	656, 680, 801
BsmFI	GGGAC	1 cut(s)	323
Bsp1286I	GDGCHC	3 cut(s)	153, 414, 741
Bsp143I	GATC	5 cut(s)	141, 433, 476, 646, 826
BspACI	CCGC	7 cut(s)	216, 226, 265, 268, 279, 335, 392
BspCNI	CTCAG	4 cut(s)	213, 439, 493, 589
BspLI	GGNNCC	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	724
BspTI	CTTAAG	1 cut(s)	511
BsrBI	CCGCTC	2 cut(s)	265, 279
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	3 cut(s)	236, 410, 694
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	5 cut(s)	60, 73, 211, 322, 623
BssMI	GATC	5 cut(s)	141, 433, 476, 646, 826
BssNAI	GTATAC	1 cut(s)	707
BssNI	GRCGYC	2 cut(s)	20, 312
BssT1I	CCWWGG	1 cut(s)	623
Bst1107I	GTATAC	1 cut(s)	707
Bst2UI	CCWGG	2 cut(s)	110, 274
Bst4CI	ACNGT	5 cut(s)	128, 247, 535, 544, 608
BstACI	GRCGYC	2 cut(s)	20, 312
BstAFI	CTTAAG	1 cut(s)	511
BstC8I	GCNNGC	4 cut(s)	106, 115, 196, 270
BstDEI	CTNAG	4 cut(s)	221, 426, 480, 597
BstDSI	CCRYGG	1 cut(s)	211
BstENI	CCTNNNNNAGG	1 cut(s)	800
BstF5I	GGATG	1 cut(s)	829
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	5 cut(s)	144, 436, 479, 649, 829
BstMAI	GTCTC	3 cut(s)	656, 680, 801
BstMBI	GATC	5 cut(s)	141, 433, 476, 646, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 114, 129, 216
BstNI	CCWGG	2 cut(s)	110, 274
BstSCI	CCNGG	3 cut(s)	37, 108, 272
BstV1I	GCAGC	2 cut(s)	29, 79
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BstZ17I	GTATAC	1 cut(s)	707
Bsu36I	CCTNAGG	1 cut(s)	221
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	829
BtsIMutI	CAGTG	2 cut(s)	229, 630
Cac8I	GCNNGC	4 cut(s)	106, 115, 196, 270
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	4 cut(s)	270, 319, 343, 692
Csp6I	GTAC	5 cut(s)	160, 205, 235, 545, 579
CviQI	GTAC	5 cut(s)	160, 205, 235, 545, 579
DdeI	CTNAG	4 cut(s)	221, 426, 480, 597
DpnI	GATC	5 cut(s)	143, 435, 478, 648, 828
DpnII	GATC	5 cut(s)	141, 433, 476, 646, 826
EaeI	YGGCCR	4 cut(s)	106, 163, 208, 774
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	623
Eco147I	AGGCCT	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	546, 687
Eco81I	CCTNAGG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	151
EcoNI	CCTNNNNNAGG	1 cut(s)	800
EcoRI	GAATTC	2 cut(s)	376, 558
EcoRII	CCWGG	2 cut(s)	108, 272
EcoT14I	CCWWGG	1 cut(s)	623
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	623
FaiI	YATR	8 cut(s)	135, 192, 360, 423, 588, 707, 800, 815
FaqI	GGGAC	1 cut(s)	323
FauI	CCCGC	2 cut(s)	261, 272
FbaI	TGATCA	2 cut(s)	141, 433
FblI	GTMKAC	1 cut(s)	706
Fnu4HI	GCNGC	5 cut(s)	43, 68, 217, 227, 266
FokI	GGATG	1 cut(s)	836
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	5 cut(s)	43, 68, 217, 227, 266
FspBI	CTAG	2 cut(s)	492, 624
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	5 cut(s)	43, 68, 217, 227, 266
HaeII	RGCGCY	1 cut(s)	105
HapII	CCGG	4 cut(s)	39, 105, 120, 346
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	2 cut(s)	20, 312
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	2 cut(s)	8, 601
HpaII	CCGG	4 cut(s)	39, 105, 120, 346
HphI	GGTGA	2 cut(s)	406, 620
Hpy166II	GTNNAC	1 cut(s)	707
Hpy188I	TCNGA	4 cut(s)	61, 326, 476, 502
Hpy188III	TCNNGA	2 cut(s)	596, 685
Hpy8I	GTNNAC	1 cut(s)	707
Hpy99I	CGWCG	3 cut(s)	22, 25, 317
HpyAV	CCTTC	3 cut(s)	253, 294, 325
HpyCH4III	ACNGT	5 cut(s)	128, 247, 535, 544, 608
HpyCH4IV	ACGT	4 cut(s)	20, 312, 438, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 114, 129, 216
HpyF3I	CTNAG	4 cut(s)	221, 426, 480, 597
HpySE526I	ACGT	4 cut(s)	20, 312, 438, 547
Hsp92I	GRCGYC	2 cut(s)	20, 312
HspAI	GCGC	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	2 cut(s)	141, 433
Kzo9I	GATC	5 cut(s)	141, 433, 476, 646, 826
LmnI	GCTCC	6 cut(s)	64, 75, 122, 148, 262, 276
Lsp1109I	GCAGC	2 cut(s)	29, 79
MaeI	CTAG	2 cut(s)	492, 624
MaeII	ACGT	4 cut(s)	20, 312, 438, 547
MaeIII	GTNAC	2 cut(s)	548, 608
MalI	GATC	5 cut(s)	143, 435, 478, 648, 828
MbiI	CCGCTC	2 cut(s)	265, 279
MboI	GATC	5 cut(s)	141, 433, 476, 646, 826
MboII	GAAGA	1 cut(s)	539
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	3 cut(s)	153, 414, 741
MlsI	TGGCCA	1 cut(s)	776
MluCI	AATT	3 cut(s)	47, 376, 558
MluNI	TGGCCA	1 cut(s)	776
MmeI	TCCRAC	1 cut(s)	801
Mox20I	TGGCCA	1 cut(s)	776
MroNI	GCCGGC	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	776
MseI	TTAA	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	776
MspCI	CTTAAG	1 cut(s)	511
MspI	CCGG	4 cut(s)	39, 105, 120, 346
MspR9I	CCNGG	3 cut(s)	39, 110, 274
MvaI	CCWGG	2 cut(s)	110, 274
MwoI	GCNNNNNNNGC	4 cut(s)	110, 114, 129, 216
NaeI	GCCGGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	5 cut(s)	141, 433, 476, 646, 826
NgoMIV	GCCGGC	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	726
NmeAIII	GCCGAG	2 cut(s)	54, 488
NmuCI	GTSAC	2 cut(s)	548, 608
PceI	AGGCCT	1 cut(s)	446
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	8, 601
Pfl23II	CGTACG	1 cut(s)	204
PkrI	GCNGC	5 cut(s)	44, 69, 218, 228, 267
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	108, 272
PspGI	CCWGG	2 cut(s)	108, 272
PspLI	CGTACG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	726
PspPI	GGNCC	4 cut(s)	270, 319, 343, 692
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	5 cut(s)	161, 206, 236, 546, 580
RsaNI	GTAC	5 cut(s)	160, 205, 235, 545, 579
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	5 cut(s)	43, 68, 217, 227, 266
Sau3AI	GATC	5 cut(s)	141, 433, 476, 646, 826
Sau96I	GGNCC	4 cut(s)	270, 319, 343, 692
ScrFI	CCNGG	3 cut(s)	39, 110, 274
SduI	GDGCHC	3 cut(s)	153, 414, 741
SfiI	GGCCNNNNNGGCC	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	3 cut(s)	47, 376, 558
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	7 cut(s)	216, 226, 265, 268, 279, 335, 392
SspMI	CTAG	2 cut(s)	492, 624
SstI	GAGCTC	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	3 cut(s)	37, 108, 272
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	5 cut(s)	128, 247, 535, 544, 608
TaiI	ACGT	4 cut(s)	23, 315, 441, 550
TaqI	TCGA	2 cut(s)	153, 684
TasI	AATT	3 cut(s)	47, 376, 558
TauI	GCSGC	3 cut(s)	219, 229, 268
TfiI	GAWTC	2 cut(s)	8, 601
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	2 cut(s)	236, 637
TseFI	GTSAC	2 cut(s)	548, 608
TseI	GCWGC	2 cut(s)	42, 67
Tsp45I	GTSAC	2 cut(s)	548, 608
TspDTI	ATGAA	1 cut(s)	732
TspRI	CASTG	2 cut(s)	236, 637
Vha464I	CTTAAG	1 cut(s)	511
XagI	CCTNNNNNAGG	1 cut(s)	800
XapI	RAATTY	2 cut(s)	376, 558
XmaJI	CCTAGG	1 cut(s)	623
XmiI	GTMKAC	1 cut(s)	706
XspI	CTAG	2 cut(s)	492, 624
ZraI	GACGTC	2 cut(s)	21, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.