Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008124

Physical Location & Seq

Genomic Coordinates Forward (+)

4529824 .. 4530741

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g07400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTCAAAATATCCATTGAGGCTGGACCGAGAGCTTGATGATCGAGTCATGACAGGGCCTGTTTCTATATCAAGAATTCAGCCTAGTGAACAGGTGCCAGAATCTGTGCTTGGTGGTAGTAATCCAATATTGCTTGATAATTTGGCAGCCAAGCACGTACTTTGCATTATGGAGGGAGATTTTATAGAGTTGGATGATCTCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

70

Amino Acids

7.68

Weight (kDa)

4.36

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008124)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34080 FvH4_2g34080 FvH4_2g34080 FvH4_2g34080
malus_domestica	MD08G1096700.v1.1 MD15G1079400.v1.1
prunus_persica	Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1 Prupe.1G432600_v2.0.a1
pyrus_communis	pycom08g07910 pycom15g07400
rosa_chinensis	RchiOBHm_Chr4g0400531 RchiOBHm_Chr4g0400541 RchiOBHm_Chr6g0308271
rosa_laevigata	RLG00000010652
rosa_multiflora	Rmu_ssc0000355.1_g000009
rosa_roxburghii	Rroxscaffold_7G00160300
rosa_rugosa	Rorug06G0365900
rosa_samantha	Rh4CG109900 Rh6AG474700 Rh6BG485300 Rh6CG490400 Rh6DG476800
rosa_wichuraiana	Rw6G041400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	75
AfaI	GTAC	1 cut(s)	159
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
AlwNI	CAGNNNCTG	2 cut(s)	59, 104
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	25, 56
AvaII	GGWCC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 56
BmiI	GGNNCC	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	157
BseGI	GGATG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	40, 196
BspANI	GGCC	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	94
BssMI	GATC	2 cut(s)	40, 196
BstBAI	YACGTR	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	43, 199
BstMBI	GATC	2 cut(s)	40, 196
BstV1I	GCAGC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	199
CaiI	CAGNNNCTG	2 cut(s)	59, 104
CciI	TCATGA	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	25, 56
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	5 cut(s)	22, 34, 58, 82, 149
CviKI_1	RGCY	5 cut(s)	22, 34, 58, 82, 149
CviQI	GTAC	1 cut(s)	158
DpnI	GATC	2 cut(s)	42, 198
DpnII	GATC	2 cut(s)	40, 196
Eco47I	GGWCC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	52
FaiI	YATR	4 cut(s)	50, 68, 170, 185
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	2 cut(s)	45, 101
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188III	TCNNGA	2 cut(s)	49, 72
Hpy8I	GTNNAC	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	40, 196
LpnPI	CCDG	5 cut(s)	8, 39, 72, 77, 111
Lsp1109I	GCAGC	1 cut(s)	158
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	156
MalI	GATC	2 cut(s)	42, 198
MboI	GATC	2 cut(s)	40, 196
MluCI	AATT	2 cut(s)	75, 139
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	2 cut(s)	12, 166
NdeII	GATC	2 cut(s)	40, 196
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	96
PagI	TCATGA	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	25, 56
PstNI	CAGNNNCTG	2 cut(s)	59, 104
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	40, 196
Sau96I	GGNCC	2 cut(s)	25, 56
SchI	GAGTC	1 cut(s)	54
SetI	ASST	3 cut(s)	36, 96, 159
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	2 cut(s)	75, 139
SspI	AATATT	1 cut(s)	129
SspMI	CTAG	1 cut(s)	84
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	43
TaqII	GACCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	75, 139
TfiI	GAWTC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	75
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.