Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004641

Physical Location & Seq

Genomic Coordinates Forward (+)

46470429 .. 46473043

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G570400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGAACTCCTTACCCAAACCCCATTTCTCCTTCCCAAACCCGCATAGGCTGGATTGGCATAGGCGTCATGGGAGCTGCCATGGCCTCCCGCCTTCTCTCAGCCGGCTACTCCCTCACCATCTACGCTCGCAATCCTTCAAAAGCTCATCCCCTCCAATCCCAAAGCGACGTCGTCTTCACAATGGTAGGACACCCACCAGATGTTCGATCGAATATCATCGACCCAGAAACCGGCCTTCTCTGGGGCCTCCGCCCAAACTCGGTCTCCGTCGACATGACAAGTAGTCATCCAGCCCTTGCCCGCGAGATTTTCAATGCTGCGCACTCCAAAGATTGCTGGACTGTCGATGCGCCAGTGTCTGGGGGTGACATTGGCACTAGAGAAGGCAAACTCGCCATACTTGCCGGCGGTGATGCTTCCGTGGTCGAGTGGTTGGCCCCATTGTTTGATGTTTTGGGGAAGGTTACTTACGTGGGTCCTGCGGGCTCCGGCCAAAACTGCAAGATTGCGAACCAGATTGTGCGGGCCGGGTTGGATGTGCAGCATTTTATGGAGGCGGTGAGGGGTGGGGCAGCCGGGTCGATGGTGATGGAGTTGTTTGGGGATAGGATTATAGGGAGGGACTTCAGGCCTGGTGGGTTTGCTGAGTATATGGTGAAGGATTTGGGGATGGGTGTGGATGTTGTGGAGGAGAATGAGGAAGGAAGGGTGGCGGTGTTGCCTGGTGCTGCATTGTGCAAGCAGTTGTTTTCTGGCATGGTGGCTAATGGGGATGGGAAGCTTGGCGGTCAAGGTCTTATCACTGTCATAGAGAGGCTCAATGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

278

Amino Acids

29.09

Weight (kDa)

5.74

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71170 AT1G71180
fragaria_vesca	FvH4_5g29271
malus_domestica	MD15G1424900.v1.1 MD15G1425100.v1.1
prunus_persica	Prupe.1G570400_v2.0.a1 Prupe.1G570500_v2.0.a1
pyrus_communis	pycom15g37670 pycom15g37680
rosa_chinensis	RchiOBHm_Chr7g0222121
rosa_laevigata	RLG00000002095 RLG00000002096
rosa_multiflora	Rmu_co8329643.1_g000001 Rmu_co8348273.1_g000001 Rmu_sc0006951.1_g000005 Rmu_sc0006951.1_g000006 Rmu_sc0020366.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237440 Rroxscaffold_3G00237450
rosa_rugosa	Rorug07G0205500 Rorug07G0205600
rosa_samantha	Rh7AG346600 Rh7AG346700 Rh7BG336500 Rh7BG336600 Rh7CG363900 Rh7CG364000 Rh7DG344400 Rh7DG344500
rosa_wichuraiana	Rw7G029360 Rw7G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
Acc16I	TGCGCA	1 cut(s)	324
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	613
AcyI	GRCGYC	2 cut(s)	66, 171
AfiI	CCNNNNNNNGG	4 cut(s)	233, 244, 262, 362
AgsI	TTSAA	2 cut(s)	141, 316
AhdI	GACNNNNNGTC	1 cut(s)	285
AjnI	CCWGG	2 cut(s)	634, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
AluBI	AGCT	3 cut(s)	77, 146, 784
AluI	AGCT	3 cut(s)	77, 146, 784
Alw26I	GTCTC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	362
AoxI	GGCC	7 cut(s)	84, 235, 247, 438, 493, 528, 632
ApeKI	GCWGC	5 cut(s)	77, 320, 544, 575, 731
AspLEI	GCGC	2 cut(s)	325, 355
AspS9I	GGNCC	4 cut(s)	247, 439, 479, 528
AsuC2I	CCSGG	2 cut(s)	532, 580
AsuHPI	GGTGA	6 cut(s)	109, 380, 425, 574, 601, 670
AvaII	GGWCC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	491
BarI	GAAGNNNNNNTAC	2 cut(s)	455, 487
BbsI	GAAGAC	1 cut(s)	169
BbvI	GCAGC	5 cut(s)	64, 307, 556, 587, 718
BccI	CCATC	5 cut(s)	128, 580, 586, 667, 770
BcgI	CGANNNNNNTGC	2 cut(s)	564, 598
BciT130I	CCWGG	2 cut(s)	636, 726
BcnI	CCSGG	2 cut(s)	532, 580
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	1 cut(s)	381
BisI	GCNGC	5 cut(s)	78, 321, 545, 576, 732
BlsI	GCNGC	5 cut(s)	79, 322, 546, 577, 733
Bme1390I	CCNGG	4 cut(s)	532, 580, 636, 726
Bme18I	GGWCC	1 cut(s)	479
BmeRI	GACNNNNNGTC	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	247, 439, 479, 528
BmiI	GGNNCC	4 cut(s)	248, 441, 480, 490
BmrFI	CCNGG	4 cut(s)	532, 580, 636, 726
BmsI	GCATC	2 cut(s)	340, 406
BpiI	GAAGAC	1 cut(s)	169
BpuMI	CCSGG	2 cut(s)	532, 580
BsaAI	YACGTR	1 cut(s)	475
BsaHI	GRCGYC	2 cut(s)	66, 171
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	81, 423
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 244, 262, 362
Bse118I	RCCGGY	3 cut(s)	104, 233, 407
Bse1I	ACTGG	1 cut(s)	356
BseBI	CCWGG	2 cut(s)	636, 726
BseDI	CCNNGG	2 cut(s)	81, 423
BseGI	GGATG	6 cut(s)	148, 289, 544, 678, 688, 781
BseLI	CCNNNNNNNGG	4 cut(s)	233, 244, 262, 362
BseMII	CTCAG	2 cut(s)	114, 639
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	707
BseXI	GCAGC	5 cut(s)	64, 307, 556, 587, 718
BsgI	GTGCAG	1 cut(s)	563
Bsh1236I	CGCG	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	7 cut(s)	86, 237, 249, 440, 495, 530, 634
BsiEI	CGRYCG	1 cut(s)	212
BsiSI	CCGG	6 cut(s)	105, 234, 408, 492, 531, 579
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	4 cut(s)	233, 244, 262, 362
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	7 cut(s)	86, 237, 249, 440, 495, 530, 634
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	1 cut(s)	209
Bsp19I	CCATGG	1 cut(s)	81
BspANI	GGCC	7 cut(s)	86, 237, 249, 440, 495, 530, 634
BspCNI	CTCAG	2 cut(s)	113, 640
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	4 cut(s)	248, 441, 480, 490
BspTNI	GGTCTC	1 cut(s)	271
BsrFI	RCCGGY	3 cut(s)	104, 233, 407
BsrI	ACTGG	1 cut(s)	356
BssAI	RCCGGY	3 cut(s)	104, 233, 407
BssECI	CCNNGG	2 cut(s)	81, 423
BssMI	GATC	1 cut(s)	209
BssNI	GRCGYC	2 cut(s)	66, 171
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	636, 726
Bst4CI	ACNGT	2 cut(s)	346, 808
BstACI	GRCGYC	2 cut(s)	66, 171
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	7 cut(s)	106, 130, 304, 409, 487, 528, 743
BstDEI	CTNAG	2 cut(s)	100, 648
BstDSI	CCRYGG	2 cut(s)	81, 423
BstF5I	GGATG	6 cut(s)	148, 289, 544, 678, 688, 781
BstFNI	CGCG	1 cut(s)	306
BstHHI	GCGC	2 cut(s)	325, 355
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	209
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 83, 404, 501
BstNI	CCWGG	2 cut(s)	636, 726
BstSCI	CCNGG	4 cut(s)	530, 578, 634, 724
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	5 cut(s)	64, 307, 556, 587, 718
BstV2I	GAAGAC	1 cut(s)	169
BsuRI	GGCC	7 cut(s)	86, 237, 249, 440, 495, 530, 634
BtgI	CCRYGG	2 cut(s)	81, 423
BtsCI	GGATG	6 cut(s)	148, 289, 544, 678, 688, 781
BtsIMutI	CAGTG	2 cut(s)	363, 804
Cac8I	GCNNGC	7 cut(s)	106, 130, 304, 409, 487, 528, 743
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	2 cut(s)	325, 355
Cfr10I	RCCGGY	3 cut(s)	104, 233, 407
Cfr13I	GGNCC	4 cut(s)	247, 439, 479, 528
CseI	GACGC	1 cut(s)	55
CviAII	CATG	4 cut(s)	70, 82, 277, 760
DdeI	CTNAG	2 cut(s)	100, 648
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
DriI	GACNNNNNGTC	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	493
Eam1105I	GACNNNNNGTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	491
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	613
EcoO109I	RGGNCCY	2 cut(s)	247, 479
EcoRII	CCWGG	2 cut(s)	634, 724
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	4 cut(s)	73, 85, 280, 763
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	4 cut(s)	69, 81, 276, 759
FauI	CCCGC	5 cut(s)	50, 98, 311, 478, 519
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	5 cut(s)	78, 321, 545, 576, 732
FokI	GGATG	6 cut(s)	135, 276, 551, 685, 695, 788
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	5 cut(s)	78, 321, 545, 576, 732
FspBI	CTAG	1 cut(s)	381
FspI	TGCGCA	1 cut(s)	324
GlaI	GCGC	2 cut(s)	324, 354
GluI	GCNGC	5 cut(s)	78, 321, 545, 576, 732
HaeIII	GGCC	7 cut(s)	86, 237, 249, 440, 495, 530, 634
HapII	CCGG	6 cut(s)	105, 234, 408, 492, 531, 579
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	2 cut(s)	325, 355
Hin1I	GRCGYC	2 cut(s)	66, 171
Hin1II	CATG	4 cut(s)	73, 85, 280, 763
Hin6I	GCGC	2 cut(s)	323, 353
HinP1I	GCGC	2 cut(s)	323, 353
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	782
HpaII	CCGG	6 cut(s)	105, 234, 408, 492, 531, 579
HphI	GGTGA	6 cut(s)	109, 380, 425, 574, 601, 670
Hpy166II	GTNNAC	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	3 cut(s)	173, 176, 275
HpyAV	CCTTC	9 cut(s)	42, 104, 147, 248, 380, 457, 655, 698, 702
HpyCH4III	ACNGT	2 cut(s)	346, 808
HpyCH4IV	ACGT	2 cut(s)	171, 474
HpyCH4V	TGCA	4 cut(s)	504, 544, 734, 741
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 83, 404, 501
HpyF3I	CTNAG	2 cut(s)	100, 648
HpySE526I	ACGT	2 cut(s)	171, 474
Hsp92I	GRCGYC	2 cut(s)	66, 171
Hsp92II	CATG	4 cut(s)	73, 85, 280, 763
HspAI	GCGC	2 cut(s)	323, 353
KroI	GCCGGC	2 cut(s)	104, 407
KroNI	GCCGGC	2 cut(s)	106, 409
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	74, 494
Lsp1109I	GCAGC	5 cut(s)	64, 307, 556, 587, 718
LweI	GCATC	2 cut(s)	340, 406
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	2 cut(s)	171, 474
MaeIII	GTNAC	2 cut(s)	368, 466
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	516
MroNI	GCCGGC	2 cut(s)	104, 407
MspI	CCGG	6 cut(s)	105, 234, 408, 492, 531, 579
MspR9I	CCNGG	4 cut(s)	532, 580, 636, 726
MvaI	CCWGG	2 cut(s)	636, 726
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	4 cut(s)	57, 83, 404, 501
NaeI	GCCGGC	2 cut(s)	106, 409
NciI	CCSGG	2 cut(s)	532, 580
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	209
NgoMIV	GCCGGC	2 cut(s)	104, 407
NlaIII	CATG	4 cut(s)	73, 85, 280, 763
NlaIV	GGNNCC	4 cut(s)	248, 441, 480, 490
NmuCI	GTSAC	1 cut(s)	368
NsbI	TGCGCA	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	634
PdiI	GCCGGC	2 cut(s)	106, 409
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	5 cut(s)	79, 322, 546, 577, 733
Ple19I	CGATCG	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	2 cut(s)	634, 724
PspGI	CCWGG	2 cut(s)	634, 724
PspN4I	GGNNCC	4 cut(s)	248, 441, 480, 490
PspPI	GGNCC	4 cut(s)	247, 439, 479, 528
PspPPI	RGGWCCY	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	362
PsyI	GACNNNGTC	1 cut(s)	173
PvuI	CGATCG	1 cut(s)	212
SalI	GTCGAC	1 cut(s)	272
SatI	GCNGC	5 cut(s)	78, 321, 545, 576, 732
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	4 cut(s)	247, 439, 479, 528
ScrFI	CCNGG	4 cut(s)	532, 580, 636, 726
SduI	GDGCHC	1 cut(s)	491
SetI	ASST	7 cut(s)	79, 148, 174, 468, 477, 786, 799
SfaNI	GCATC	2 cut(s)	340, 406
SinI	GGWCC	1 cut(s)	479
SseBI	AGGCCT	1 cut(s)	634
SspMI	CTAG	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	634
StyD4I	CCNGG	4 cut(s)	530, 578, 634, 724
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	346, 808
TaiI	ACGT	2 cut(s)	174, 477
TaqI	TCGA	7 cut(s)	208, 212, 222, 273, 348, 429, 584
TaqII	GACCGA	1 cut(s)	253
TscAI	CASTG	2 cut(s)	363, 811
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	5 cut(s)	77, 320, 544, 575, 731
Tsp45I	GTSAC	1 cut(s)	368
TspGWI	ACGGA	2 cut(s)	259, 412
TspRI	CASTG	2 cut(s)	363, 811
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	381
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.