Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020366.1

Orthogroup ID

OG0004641

Physical Location & Seq

Genomic Coordinates Forward (+)

2293 .. 3237

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020366.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgggaactccttacccaaaccccataactcctgctcagacccgcattggttggatcggcattggcctcatgggcgctcctatggcctctcgcctcatctcagctggctactccctcaccatctatgctcgcactccttccaaagccctttcactacaatcccaaggtgcccgcctagcccagtcccctttcgaagttgctcaatgtagtgatgttgtcttcaccatagtgggacacccaccggatgtacgacaagttatcttggaggcaaacggcatactttcaggcctaaacccgaacggcgtcacggtggacatgaccaccaatctaccagccttggcacgtgagatatcatcaactgcgcgtgccaaagattgttgggcagttgacgccccagtctccggggcagatgttggcgccagggaagggaaacttggaatatttgcaggcggtgatgctggagtcgtcaagtggctaacaccattgtttgatatcatgggaaaggttacgtatatgggtgaagcagggtgcggccagagctgcaagatagcgaataacattgtgggaggggtgagttttgttggtttgagtgaaggtttggtgtttgcagagagagctggcttggatttgaagcagtttttggaagcagtgagaggaggggcggcaggatcgacgttgatggagttatttggggagaaaatgatcgagcaggacttcaggcctggtgggtttgttgagtatattgtgaaggacttagggatgggattaaatattgtggaggaaactgatgatgaacgggtggtggtgttgcctggtgctgcattgtgcaagcaactgtttactgggatggttgctaatggggatgcaaagctcggccttcagggccttatcactgttatacaaaggctcaatggcatatctgaaatcgacaattctactcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

314

Amino Acids

32.89

Weight (kDa)

5.0

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71170 AT1G71180
fragaria_vesca	FvH4_5g29271
malus_domestica	MD15G1424900.v1.1 MD15G1425100.v1.1
prunus_persica	Prupe.1G570400_v2.0.a1 Prupe.1G570500_v2.0.a1
pyrus_communis	pycom15g37670 pycom15g37680
rosa_chinensis	RchiOBHm_Chr7g0222121
rosa_laevigata	RLG00000002095 RLG00000002096
rosa_multiflora	Rmu_co8329643.1_g000001 Rmu_co8348273.1_g000001 Rmu_sc0006951.1_g000005 Rmu_sc0006951.1_g000006 Rmu_sc0020366.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237440 Rroxscaffold_3G00237450
rosa_rugosa	Rorug07G0205500 Rorug07G0205600
rosa_samantha	Rh7AG346600 Rh7AG346700 Rh7BG336500 Rh7BG336600 Rh7CG363900 Rh7CG364000 Rh7DG344400 Rh7DG344500
rosa_wichuraiana	Rw7G029360 Rw7G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
AccB1I	GGYRCC	2 cut(s)	167, 416
AccII	CGCG	1 cut(s)	364
AciI	CCGC	5 cut(s)	43, 172, 450, 531, 662
AclWI	GGATC	2 cut(s)	62, 676
AcoI	YGGCCR	1 cut(s)	532
AcuI	CTGAAG	2 cut(s)	700, 863
AcvI	CACGTG	1 cut(s)	344
AcyI	GRCGYC	3 cut(s)	303, 390, 417
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	401, 426
AgsI	TTSAA	1 cut(s)	631
AjnI	CCWGG	3 cut(s)	419, 721, 811
AjuI	GAANNNNNNNTTGG	4 cut(s)	417, 449, 623, 655
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	4 cut(s)	104, 540, 617, 871
AluI	AGCT	4 cut(s)	104, 540, 617, 871
Alw26I	GTCTC	1 cut(s)	403
AlwI	GGATC	2 cut(s)	62, 676
AoxI	GGCC	7 cut(s)	64, 84, 286, 532, 719, 874, 883
ApeKI	GCWGC	2 cut(s)	540, 818
AspLEI	GCGC	3 cut(s)	77, 364, 419
AspS9I	GGNCC	1 cut(s)	883
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	5 cut(s)	109, 214, 464, 530, 583
AsuII	TTCGAA	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	172
BanI	GGYRCC	2 cut(s)	167, 416
BbrPI	CACGTG	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	527, 805
BccI	CCATC	4 cut(s)	128, 673, 754, 841
BceAI	ACGGC	2 cut(s)	289, 316
BciT130I	CCWGG	3 cut(s)	421, 723, 813
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	1 cut(s)	176
BfoI	RGCGCY	2 cut(s)	78, 420
BglI	GCCNNNNNGGC	2 cut(s)	72, 882
BisI	GCNGC	4 cut(s)	532, 541, 663, 819
BlsI	GCNGC	4 cut(s)	533, 542, 664, 820
Bme1390I	CCNGG	4 cut(s)	403, 421, 723, 813
BmgT120I	GGNCC	1 cut(s)	883
BmiI	GGNNCC	2 cut(s)	169, 418
BmrFI	CCNGG	4 cut(s)	403, 421, 723, 813
BmrI	ACTGGG	3 cut(s)	175, 389, 852
BmsI	GCATC	2 cut(s)	445, 853
BmuI	ACTGGG	3 cut(s)	175, 389, 852
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	403
BsaAI	YACGTR	2 cut(s)	344, 510
BsaHI	GRCGYC	3 cut(s)	303, 390, 417
BsaJI	CCNNGG	4 cut(s)	163, 336, 402, 420
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 426
Bse1I	ACTGG	3 cut(s)	181, 395, 847
BseBI	CCWGG	3 cut(s)	421, 723, 813
BseDI	CCNNGG	4 cut(s)	163, 336, 402, 420
BseGI	GGATG	4 cut(s)	250, 765, 852, 868
BseLI	CCNNNNNNNGG	2 cut(s)	401, 426
BseMII	CTCAG	2 cut(s)	50, 114
BseNI	ACTGG	3 cut(s)	181, 395, 847
BseRI	GAGGAG	1 cut(s)	669
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	527, 805
Bsh1236I	CGCG	1 cut(s)	364
BshFI	GGCC	7 cut(s)	66, 86, 288, 534, 721, 876, 885
BshNI	GGYRCC	2 cut(s)	167, 416
BsiSI	CCGG	2 cut(s)	242, 402
BslFI	GGGAC	2 cut(s)	169, 246
BslI	CCNNNNNNNGG	2 cut(s)	401, 426
BsmAI	GTCTC	1 cut(s)	403
BsmFI	GGGAC	2 cut(s)	169, 246
BsnI	GGCC	7 cut(s)	66, 86, 288, 534, 721, 876, 885
Bsp119I	TTCGAA	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	54, 668, 702
BspACI	CCGC	5 cut(s)	43, 172, 450, 531, 662
BspANI	GGCC	7 cut(s)	66, 86, 288, 534, 721, 876, 885
BspCNI	CTCAG	2 cut(s)	49, 113
BspFNI	CGCG	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	169, 418
BspPI	GGATC	2 cut(s)	62, 676
BspT104I	TTCGAA	1 cut(s)	192
BspT107I	GGYRCC	2 cut(s)	167, 416
BsrI	ACTGG	3 cut(s)	181, 395, 847
BssECI	CCNNGG	4 cut(s)	163, 336, 402, 420
BssMI	GATC	3 cut(s)	54, 668, 702
BssNI	GRCGYC	3 cut(s)	303, 390, 417
BssT1I	CCWWGG	2 cut(s)	163, 336
Bst2UI	CCWGG	3 cut(s)	421, 723, 813
Bst4CI	ACNGT	3 cut(s)	310, 837, 895
BstACI	GRCGYC	3 cut(s)	303, 390, 417
BstBAI	YACGTR	2 cut(s)	344, 510
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	7 cut(s)	106, 130, 172, 366, 448, 619, 830
BstDEI	CTNAG	3 cut(s)	36, 100, 754
BstF5I	GGATG	4 cut(s)	250, 765, 852, 868
BstFNI	CGCG	1 cut(s)	364
BstH2I	RGCGCY	2 cut(s)	78, 420
BstHHI	GCGC	3 cut(s)	77, 364, 419
BstKTI	GATC	3 cut(s)	57, 671, 705
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	3 cut(s)	54, 668, 702
BstMWI	GCNNNNNNNGC	8 cut(s)	72, 83, 176, 389, 537, 540, 614, 882
BstNI	CCWGG	3 cut(s)	421, 723, 813
BstSCI	CCNGG	4 cut(s)	401, 419, 721, 811
BstSLI	GKGCMC	1 cut(s)	172
BstSNI	TACGTA	1 cut(s)	510
BstUI	CGCG	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	527, 805
BstV2I	GAAGAC	1 cut(s)	211
BsuRI	GGCC	7 cut(s)	66, 86, 288, 534, 721, 876, 885
BtsCI	GGATG	4 cut(s)	250, 765, 852, 868
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	654, 891
Cac8I	GCNNGC	7 cut(s)	106, 130, 172, 366, 448, 619, 830
CfoI	GCGC	3 cut(s)	77, 364, 419
Cfr13I	GGNCC	1 cut(s)	883
CseI	GACGC	2 cut(s)	292, 398
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	3 cut(s)	70, 316, 496
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	3 cut(s)	36, 100, 754
DinI	GGCGCC	1 cut(s)	418
DpnI	GATC	3 cut(s)	56, 670, 704
DpnII	GATC	3 cut(s)	54, 668, 702
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	532
Eco105I	TACGTA	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	163, 336
Eco147I	AGGCCT	2 cut(s)	288, 721
Eco32I	GATATC	2 cut(s)	351, 493
Eco57I	CTGAAG	2 cut(s)	700, 863
Eco72I	CACGTG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	883
EcoRII	CCWGG	3 cut(s)	419, 721, 811
EcoRV	GATATC	2 cut(s)	351, 493
EcoT14I	CCWWGG	2 cut(s)	163, 336
EgeI	GGCGCC	1 cut(s)	418
EheI	GGCGCC	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	163, 336
FaeI	CATG	3 cut(s)	73, 319, 499
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	2 cut(s)	169, 246
FatI	CATG	3 cut(s)	69, 315, 495
FauI	CCCGC	2 cut(s)	50, 179
Fnu4HI	GCNGC	4 cut(s)	532, 541, 663, 819
FokI	GGATG	4 cut(s)	257, 772, 859, 875
Fsp4HI	GCNGC	4 cut(s)	532, 541, 663, 819
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	3 cut(s)	76, 363, 418
GluI	GCNGC	4 cut(s)	532, 541, 663, 819
GsuI	CTGGAG	1 cut(s)	480
HaeII	RGCGCY	2 cut(s)	78, 420
HaeIII	GGCC	7 cut(s)	66, 86, 288, 534, 721, 876, 885
HapII	CCGG	2 cut(s)	242, 402
HgaI	GACGC	2 cut(s)	292, 398
HhaI	GCGC	3 cut(s)	77, 364, 419
Hin1I	GRCGYC	3 cut(s)	303, 390, 417
Hin1II	CATG	3 cut(s)	73, 319, 499
Hin6I	GCGC	3 cut(s)	75, 362, 417
HinP1I	GCGC	3 cut(s)	75, 362, 417
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	1 cut(s)	462
HpaII	CCGG	2 cut(s)	242, 402
HphI	GGTGA	5 cut(s)	109, 214, 464, 530, 583
Hpy166II	GTNNAC	3 cut(s)	313, 388, 840
Hpy188I	TCNGA	2 cut(s)	39, 922
Hpy8I	GTNNAC	3 cut(s)	313, 388, 840
Hpy99I	CGWCG	1 cut(s)	676
HpyAV	CCTTC	5 cut(s)	147, 419, 587, 742, 887
HpyCH4III	ACNGT	3 cut(s)	310, 837, 895
HpyCH4IV	ACGT	3 cut(s)	343, 509, 674
HpyCH4V	TGCA	6 cut(s)	446, 543, 608, 821, 828, 866
HpyF10VI	GCNNNNNNNGC	8 cut(s)	72, 83, 176, 389, 537, 540, 614, 882
HpyF3I	CTNAG	3 cut(s)	36, 100, 754
HpySE526I	ACGT	3 cut(s)	343, 509, 674
Hsp92I	GRCGYC	3 cut(s)	303, 390, 417
Hsp92II	CATG	3 cut(s)	73, 319, 499
HspAI	GCGC	3 cut(s)	75, 362, 417
KasI	GGCGCC	1 cut(s)	416
Kzo9I	GATC	3 cut(s)	54, 668, 702
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	2 cut(s)	527, 805
LweI	GCATC	2 cut(s)	445, 853
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	3 cut(s)	343, 509, 674
MaeIII	GTNAC	2 cut(s)	304, 505
MalI	GATC	3 cut(s)	56, 670, 704
MboI	GATC	3 cut(s)	54, 668, 702
MboII	GAAGA	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	931
Mly113I	GGCGCC	1 cut(s)	417
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	9 cut(s)	77, 97, 104, 125, 259, 560, 647, 650, 772
MseI	TTAA	1 cut(s)	767
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	2 cut(s)	242, 402
MspR9I	CCNGG	4 cut(s)	403, 421, 723, 813
MvaI	CCWGG	3 cut(s)	421, 723, 813
MvnI	CGCG	1 cut(s)	364
MwoI	GCNNNNNNNGC	8 cut(s)	72, 83, 176, 389, 537, 540, 614, 882
NarI	GGCGCC	1 cut(s)	417
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	3 cut(s)	54, 668, 702
NlaIII	CATG	3 cut(s)	73, 319, 499
NlaIV	GGNNCC	2 cut(s)	169, 418
NmeAIII	GCCGAG	1 cut(s)	852
NmuCI	GTSAC	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	192
OliI	CACNNNNGTG	1 cut(s)	227
PceI	AGGCCT	2 cut(s)	288, 721
PkrI	GCNGC	4 cut(s)	533, 542, 664, 820
PleI	GAGTC	1 cut(s)	470
PluTI	GGCGCC	1 cut(s)	420
PmaCI	CACGTG	1 cut(s)	344
PmlI	CACGTG	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	470
Ppu21I	YACGTR	2 cut(s)	344, 510
Psp6I	CCWGG	3 cut(s)	419, 721, 811
PspCI	CACGTG	1 cut(s)	344
PspGI	CCWGG	3 cut(s)	419, 721, 811
PspN4I	GGNNCC	2 cut(s)	169, 418
PspPI	GGNCC	1 cut(s)	883
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	767
SatI	GCNGC	4 cut(s)	532, 541, 663, 819
Sau3AI	GATC	3 cut(s)	54, 668, 702
Sau96I	GGNCC	1 cut(s)	883
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	4 cut(s)	403, 421, 723, 813
SduI	GDGCHC	1 cut(s)	172
SfaNI	GCATC	2 cut(s)	445, 853
SfiI	GGCCNNNNNGGCC	1 cut(s)	882
SfoI	GGCGCC	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	227
SnaBI	TACGTA	1 cut(s)	510
Sse9I	AATT	1 cut(s)	931
SseBI	AGGCCT	2 cut(s)	288, 721
SsiI	CCGC	5 cut(s)	43, 172, 450, 531, 662
SspDI	GGCGCC	1 cut(s)	416
SspI	AATATT	2 cut(s)	441, 772
SspMI	CTAG	1 cut(s)	176
StuI	AGGCCT	2 cut(s)	288, 721
StyD4I	CCNGG	4 cut(s)	401, 419, 721, 811
StyI	CCWWGG	2 cut(s)	163, 336
TaaI	ACNGT	3 cut(s)	310, 837, 895
TaiI	ACGT	3 cut(s)	346, 512, 677
TaqI	TCGA	4 cut(s)	192, 671, 705, 927
TasI	AATT	1 cut(s)	931
TauI	GCSGC	2 cut(s)	534, 665
Tru1I	TTAA	1 cut(s)	767
Tru9I	TTAA	1 cut(s)	767
TscAI	CASTG	2 cut(s)	654, 898
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	540, 818
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	807
TspRI	CASTG	2 cut(s)	654, 898
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.