Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8348273.1

Orthogroup ID

OG0004641

Physical Location & Seq

Genomic Coordinates Forward (+)

19 .. 894

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8348273.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgggcgctcctatggcctctcgcctcatctcagctggctactccctcaccatctatgctcgcactccttccaaagccctttcactacaatcccaaggtgcccgcctagcccagtcccctttcgaagttgctcaatgtagtgatgttgtcttcaccatagtgggacacccaccggatgtacgacaagttatcttggaggcaaacggcatactttcaggcctaaacccgaacggcgtcacggtggacatgaccaccaatctaccagccttggcacgtgagatatcatcaactgcgcgtgccaaagattgttgggcagttgacgccccagtctccggggcagatgttggcgccagggaagggaaacttggaatatttgcaggcggtgatgctggagtcgtcaagtggctaacaccattgtttgatatcatgggaaaggttacgtatatgggtgaagcagggtgcggccagagctgcaagatagcgaataacattgtgggaggggtgagttttgttggtttgagtgaaggtttggtgtttgcagagagagctggcttggatttgaagcagtttttggaagcagtgagaggaggggcggcaggatcgacgttgatggagttatttggggagaaaatgatcgagcaggacttcaggcctggtgggtttgttgagtatattgtgaaggacttagggatgggattaaatattgtggaggaaactgatgatgaacgggtggtggtgttgcctggtgctgcattgtgcaagcaactgtttactgggatggttgctaatggggatgcaaagctcggccttcagggccttatcactgttatacaaaggctcaatggcatatctgaaatcgacaattctactcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

291

Amino Acids

30.45

Weight (kDa)

4.9

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71170 AT1G71180
fragaria_vesca	FvH4_5g29271
malus_domestica	MD15G1424900.v1.1 MD15G1425100.v1.1
prunus_persica	Prupe.1G570400_v2.0.a1 Prupe.1G570500_v2.0.a1
pyrus_communis	pycom15g37670 pycom15g37680
rosa_chinensis	RchiOBHm_Chr7g0222121
rosa_laevigata	RLG00000002095 RLG00000002096
rosa_multiflora	Rmu_co8329643.1_g000001 Rmu_co8348273.1_g000001 Rmu_sc0006951.1_g000005 Rmu_sc0006951.1_g000006 Rmu_sc0020366.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237440 Rroxscaffold_3G00237450
rosa_rugosa	Rorug07G0205500 Rorug07G0205600
rosa_samantha	Rh7AG346600 Rh7AG346700 Rh7BG336500 Rh7BG336600 Rh7CG363900 Rh7CG364000 Rh7DG344400 Rh7DG344500
rosa_wichuraiana	Rw7G029360 Rw7G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AccB1I	GGYRCC	2 cut(s)	98, 347
AccII	CGCG	1 cut(s)	295
AciI	CCGC	4 cut(s)	103, 381, 462, 593
AclWI	GGATC	1 cut(s)	607
AcoI	YGGCCR	1 cut(s)	463
AcuI	CTGAAG	2 cut(s)	631, 794
AcvI	CACGTG	1 cut(s)	275
AcyI	GRCGYC	3 cut(s)	234, 321, 348
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	332, 357
AgsI	TTSAA	1 cut(s)	562
AjnI	CCWGG	3 cut(s)	350, 652, 742
AjuI	GAANNNNNNNTTGG	4 cut(s)	348, 380, 554, 586
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	4 cut(s)	35, 471, 548, 802
AluI	AGCT	4 cut(s)	35, 471, 548, 802
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	607
AoxI	GGCC	6 cut(s)	15, 217, 463, 650, 805, 814
ApeKI	GCWGC	2 cut(s)	471, 749
AspLEI	GCGC	3 cut(s)	8, 295, 350
AspS9I	GGNCC	1 cut(s)	814
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	5 cut(s)	40, 145, 395, 461, 514
AsuII	TTCGAA	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	103
BanI	GGYRCC	2 cut(s)	98, 347
BbrPI	CACGTG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	458, 736
BccI	CCATC	4 cut(s)	59, 604, 685, 772
BceAI	ACGGC	2 cut(s)	220, 247
BciT130I	CCWGG	3 cut(s)	352, 654, 744
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	107
BfoI	RGCGCY	2 cut(s)	9, 351
BglI	GCCNNNNNGGC	1 cut(s)	813
BisI	GCNGC	4 cut(s)	463, 472, 594, 750
BlsI	GCNGC	4 cut(s)	464, 473, 595, 751
Bme1390I	CCNGG	4 cut(s)	334, 352, 654, 744
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	2 cut(s)	100, 349
BmrFI	CCNGG	4 cut(s)	334, 352, 654, 744
BmrI	ACTGGG	3 cut(s)	106, 320, 783
BmsI	GCATC	2 cut(s)	376, 784
BmuI	ACTGGG	3 cut(s)	106, 320, 783
BpiI	GAAGAC	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	334
BsaAI	YACGTR	2 cut(s)	275, 441
BsaHI	GRCGYC	3 cut(s)	234, 321, 348
BsaJI	CCNNGG	4 cut(s)	94, 267, 333, 351
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 357
Bse1I	ACTGG	3 cut(s)	112, 326, 778
BseBI	CCWGG	3 cut(s)	352, 654, 744
BseDI	CCNNGG	4 cut(s)	94, 267, 333, 351
BseGI	GGATG	4 cut(s)	181, 696, 783, 799
BseLI	CCNNNNNNNGG	2 cut(s)	332, 357
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	3 cut(s)	112, 326, 778
BseRI	GAGGAG	1 cut(s)	600
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	458, 736
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	6 cut(s)	17, 219, 465, 652, 807, 816
BshNI	GGYRCC	2 cut(s)	98, 347
BsiSI	CCGG	2 cut(s)	173, 333
BslFI	GGGAC	2 cut(s)	100, 177
BslI	CCNNNNNNNGG	2 cut(s)	332, 357
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	100, 177
BsnI	GGCC	6 cut(s)	17, 219, 465, 652, 807, 816
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	599, 633
BspACI	CCGC	4 cut(s)	103, 381, 462, 593
BspANI	GGCC	6 cut(s)	17, 219, 465, 652, 807, 816
BspCNI	CTCAG	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	100, 349
BspPI	GGATC	1 cut(s)	607
BspT104I	TTCGAA	1 cut(s)	123
BspT107I	GGYRCC	2 cut(s)	98, 347
BsrI	ACTGG	3 cut(s)	112, 326, 778
BssECI	CCNNGG	4 cut(s)	94, 267, 333, 351
BssMI	GATC	2 cut(s)	599, 633
BssNI	GRCGYC	3 cut(s)	234, 321, 348
BssT1I	CCWWGG	2 cut(s)	94, 267
Bst2UI	CCWGG	3 cut(s)	352, 654, 744
Bst4CI	ACNGT	3 cut(s)	241, 768, 826
BstACI	GRCGYC	3 cut(s)	234, 321, 348
BstBAI	YACGTR	2 cut(s)	275, 441
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	7 cut(s)	37, 61, 103, 297, 379, 550, 761
BstDEI	CTNAG	2 cut(s)	31, 685
BstF5I	GGATG	4 cut(s)	181, 696, 783, 799
BstFNI	CGCG	1 cut(s)	295
BstH2I	RGCGCY	2 cut(s)	9, 351
BstHHI	GCGC	3 cut(s)	8, 295, 350
BstKTI	GATC	2 cut(s)	602, 636
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	599, 633
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 107, 320, 468, 471, 545, 813
BstNI	CCWGG	3 cut(s)	352, 654, 744
BstSCI	CCNGG	4 cut(s)	332, 350, 652, 742
BstSLI	GKGCMC	1 cut(s)	103
BstSNI	TACGTA	1 cut(s)	441
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	458, 736
BstV2I	GAAGAC	1 cut(s)	142
BsuRI	GGCC	6 cut(s)	17, 219, 465, 652, 807, 816
BtsCI	GGATG	4 cut(s)	181, 696, 783, 799
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	585, 822
Cac8I	GCNNGC	7 cut(s)	37, 61, 103, 297, 379, 550, 761
CfoI	GCGC	3 cut(s)	8, 295, 350
Cfr13I	GGNCC	1 cut(s)	814
CseI	GACGC	2 cut(s)	223, 329
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	2 cut(s)	247, 427
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	2 cut(s)	31, 685
DinI	GGCGCC	1 cut(s)	349
DpnI	GATC	2 cut(s)	601, 635
DpnII	GATC	2 cut(s)	599, 633
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	463
Eco105I	TACGTA	1 cut(s)	441
Eco130I	CCWWGG	2 cut(s)	94, 267
Eco147I	AGGCCT	2 cut(s)	219, 652
Eco32I	GATATC	2 cut(s)	282, 424
Eco57I	CTGAAG	2 cut(s)	631, 794
Eco72I	CACGTG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	814
EcoRII	CCWGG	3 cut(s)	350, 652, 742
EcoRV	GATATC	2 cut(s)	282, 424
EcoT14I	CCWWGG	2 cut(s)	94, 267
EgeI	GGCGCC	1 cut(s)	349
EheI	GGCGCC	1 cut(s)	349
ErhI	CCWWGG	2 cut(s)	94, 267
FaeI	CATG	2 cut(s)	250, 430
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FaqI	GGGAC	2 cut(s)	100, 177
FatI	CATG	2 cut(s)	246, 426
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	4 cut(s)	463, 472, 594, 750
FokI	GGATG	4 cut(s)	188, 703, 790, 806
Fsp4HI	GCNGC	4 cut(s)	463, 472, 594, 750
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	3 cut(s)	7, 294, 349
GluI	GCNGC	4 cut(s)	463, 472, 594, 750
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	2 cut(s)	9, 351
HaeIII	GGCC	6 cut(s)	17, 219, 465, 652, 807, 816
HapII	CCGG	2 cut(s)	173, 333
HgaI	GACGC	2 cut(s)	223, 329
HhaI	GCGC	3 cut(s)	8, 295, 350
Hin1I	GRCGYC	3 cut(s)	234, 321, 348
Hin1II	CATG	2 cut(s)	250, 430
Hin6I	GCGC	3 cut(s)	6, 293, 348
HinP1I	GCGC	3 cut(s)	6, 293, 348
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	1 cut(s)	393
HpaII	CCGG	2 cut(s)	173, 333
HphI	GGTGA	5 cut(s)	40, 145, 395, 461, 514
Hpy166II	GTNNAC	3 cut(s)	244, 319, 771
Hpy188I	TCNGA	1 cut(s)	853
Hpy8I	GTNNAC	3 cut(s)	244, 319, 771
Hpy99I	CGWCG	1 cut(s)	607
HpyAV	CCTTC	5 cut(s)	78, 350, 518, 673, 818
HpyCH4III	ACNGT	3 cut(s)	241, 768, 826
HpyCH4IV	ACGT	3 cut(s)	274, 440, 605
HpyCH4V	TGCA	6 cut(s)	377, 474, 539, 752, 759, 797
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 107, 320, 468, 471, 545, 813
HpyF3I	CTNAG	2 cut(s)	31, 685
HpySE526I	ACGT	3 cut(s)	274, 440, 605
Hsp92I	GRCGYC	3 cut(s)	234, 321, 348
Hsp92II	CATG	2 cut(s)	250, 430
HspAI	GCGC	3 cut(s)	6, 293, 348
KasI	GGCGCC	1 cut(s)	347
Kzo9I	GATC	2 cut(s)	599, 633
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	2 cut(s)	458, 736
LweI	GCATC	2 cut(s)	376, 784
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	3 cut(s)	274, 440, 605
MaeIII	GTNAC	2 cut(s)	235, 436
MalI	GATC	2 cut(s)	601, 635
MboI	GATC	2 cut(s)	599, 633
MboII	GAAGA	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	1 cut(s)	862
Mly113I	GGCGCC	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	402
MnlI	CCTC	8 cut(s)	28, 35, 56, 190, 491, 578, 581, 703
MseI	TTAA	1 cut(s)	698
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	2 cut(s)	173, 333
MspR9I	CCNGG	4 cut(s)	334, 352, 654, 744
MvaI	CCWGG	3 cut(s)	352, 654, 744
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	7 cut(s)	14, 107, 320, 468, 471, 545, 813
NarI	GGCGCC	1 cut(s)	348
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	2 cut(s)	599, 633
NlaIII	CATG	2 cut(s)	250, 430
NlaIV	GGNNCC	2 cut(s)	100, 349
NmeAIII	GCCGAG	1 cut(s)	783
NmuCI	GTSAC	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	123
OliI	CACNNNNGTG	1 cut(s)	158
PceI	AGGCCT	2 cut(s)	219, 652
PkrI	GCNGC	4 cut(s)	464, 473, 595, 751
PleI	GAGTC	1 cut(s)	401
PluTI	GGCGCC	1 cut(s)	351
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	401
Ppu21I	YACGTR	2 cut(s)	275, 441
Psp6I	CCWGG	3 cut(s)	350, 652, 742
PspCI	CACGTG	1 cut(s)	275
PspGI	CCWGG	3 cut(s)	350, 652, 742
PspN4I	GGNNCC	2 cut(s)	100, 349
PspPI	GGNCC	1 cut(s)	814
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	698
SatI	GCNGC	4 cut(s)	463, 472, 594, 750
Sau3AI	GATC	2 cut(s)	599, 633
Sau96I	GGNCC	1 cut(s)	814
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	4 cut(s)	334, 352, 654, 744
SduI	GDGCHC	1 cut(s)	103
SfaNI	GCATC	2 cut(s)	376, 784
SfiI	GGCCNNNNNGGCC	1 cut(s)	813
SfoI	GGCGCC	1 cut(s)	349
SfuI	TTCGAA	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	158
SnaBI	TACGTA	1 cut(s)	441
Sse9I	AATT	1 cut(s)	862
SseBI	AGGCCT	2 cut(s)	219, 652
SsiI	CCGC	4 cut(s)	103, 381, 462, 593
SspDI	GGCGCC	1 cut(s)	347
SspI	AATATT	2 cut(s)	372, 703
SspMI	CTAG	1 cut(s)	107
StuI	AGGCCT	2 cut(s)	219, 652
StyD4I	CCNGG	4 cut(s)	332, 350, 652, 742
StyI	CCWWGG	2 cut(s)	94, 267
TaaI	ACNGT	3 cut(s)	241, 768, 826
TaiI	ACGT	3 cut(s)	277, 443, 608
TaqI	TCGA	4 cut(s)	123, 602, 636, 858
TasI	AATT	1 cut(s)	862
TauI	GCSGC	2 cut(s)	465, 596
Tru1I	TTAA	1 cut(s)	698
Tru9I	TTAA	1 cut(s)	698
TscAI	CASTG	2 cut(s)	585, 829
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	471, 749
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	738
TspRI	CASTG	2 cut(s)	585, 829
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.