Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004641

Physical Location & Seq

Genomic Coordinates Forward (+)

46477336 .. 46478561

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G570500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGAACTCCTTACCCAAACCCCATTTCTCCTTCCCAAACCCGCATAGGCTGGATTGGCATAGGCGTCATGGGTGCTGCGATGGCCTCCCGCCTTCTCTCAGCCGGCTACTCCCTCACCATCTACGCTCGCACTCCTTCAAAAGCTCATCCCCTCCAATCCCAAGGTGCCCAACTCGCCCATTCCCCATTTCAACTCGCTCAAGTCAGCGACGTCGTCTTCACAATGGTGGGACACCCACCAGATGTTCGATCAAATATCCTCGACCCAGAAACCGGCCTTCTCTGGGGCCTCCGGCCAAACTCGGTCTCCGTCGACATGACAAGTAGTCATCCAGCCCTTGCCCGCGAGATTTTCAATGCTGCGCGCGCCAAAGATTGCTGGACTGTCGATGCGCCAGTGTCTGGGGGTGACATTGGCGCTAGAGAAGGCAAACTCGCCATACTTGCCGGCGGTGATGCTTCCGTGGTCGAGTGGTTGGCCCCATTGTTTGATGTTTTGGGGAAGGTTACTTACGTGGGTCCTGCGGGCTCCGGCCAAAACTGCAAGATTGCGAACCAGATTGTGGTGGGGGGGAATTTGCTGGGGTTGAGCGAAGGGTTGGTGTTTGCCGAGCGGGCCGGGTTGGATGTGCAGCAGTTTATGGAGGCGGTGAGGGGTGGGGCAGCCGGGTCGATGGTGATGGAGTTGTTTGGGGATAGGATTATAGGGAGGGACTTCAGGCCTGGTGGGTTTGCTGAGTATATGGTGAAGGATTTGGGGATGGGTGTGGATGTTGTGGAGGAGAATGAGGAAGGAAGGGTGGCGGTGTTGCCTGGTGCTGCATTGTGCAAGCAGTTGTTTTCTGGCATGGTGGCTAATGGGGATGGGAAGCTTGGCGGTCAAGGTCTTATCACTGTCATAGAGAGGCTCAATGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

308

Amino Acids

32.05

Weight (kDa)

5.44

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71170 AT1G71180
fragaria_vesca	FvH4_5g29271
malus_domestica	MD15G1424900.v1.1 MD15G1425100.v1.1
prunus_persica	Prupe.1G570400_v2.0.a1 Prupe.1G570500_v2.0.a1
pyrus_communis	pycom15g37670 pycom15g37680
rosa_chinensis	RchiOBHm_Chr7g0222121
rosa_laevigata	RLG00000002095 RLG00000002096
rosa_multiflora	Rmu_co8329643.1_g000001 Rmu_co8348273.1_g000001 Rmu_sc0006951.1_g000005 Rmu_sc0006951.1_g000006 Rmu_sc0020366.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237440 Rroxscaffold_3G00237450
rosa_rugosa	Rorug07G0205500 Rorug07G0205600
rosa_samantha	Rh7AG346600 Rh7AG346700 Rh7BG336500 Rh7BG336600 Rh7CG363900 Rh7CG364000 Rh7DG344400 Rh7DG344500
rosa_wichuraiana	Rw7G029360 Rw7G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	2 cut(s)	404, 565
AccBSI	CCGCTC	1 cut(s)	616
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	3 cut(s)	348, 367, 369
AciI	CCGC	9 cut(s)	43, 91, 346, 453, 527, 616, 650, 806, 879
AcoI	YGGCCR	2 cut(s)	296, 535
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	703
AcyI	GRCGYC	2 cut(s)	66, 213
AfiI	CCNNNNNNNGG	4 cut(s)	275, 286, 404, 565
AgsI	TTSAA	3 cut(s)	141, 194, 358
AhdI	GACNNNNNGTC	1 cut(s)	327
AjnI	CCWGG	2 cut(s)	724, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	2 cut(s)	146, 874
AluI	AGCT	2 cut(s)	146, 874
Alw26I	GTCTC	1 cut(s)	313
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	8 cut(s)	84, 277, 289, 296, 480, 535, 618, 722
ApeKI	GCWGC	5 cut(s)	77, 362, 634, 665, 821
ApoI	RAATTY	1 cut(s)	577
AspLEI	GCGC	5 cut(s)	367, 369, 371, 397, 422
AspS9I	GGNCC	4 cut(s)	289, 481, 521, 618
AsuC2I	CCSGG	2 cut(s)	622, 670
AsuHPI	GGTGA	6 cut(s)	109, 422, 467, 664, 691, 760
AvaII	GGWCC	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	533
BarI	GAAGNNNNNNTAC	2 cut(s)	497, 529
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	5 cut(s)	64, 349, 646, 677, 808
BccI	CCATC	6 cut(s)	76, 128, 670, 676, 757, 860
BcgI	CGANNNNNNTGC	2 cut(s)	654, 688
BciT130I	CCWGG	2 cut(s)	726, 816
BcnI	CCSGG	2 cut(s)	622, 670
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	423
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	5 cut(s)	78, 363, 635, 666, 822
BlsI	GCNGC	5 cut(s)	79, 364, 636, 667, 823
Bme1390I	CCNGG	4 cut(s)	622, 670, 726, 816
Bme18I	GGWCC	1 cut(s)	521
BmeRI	GACNNNNNGTC	1 cut(s)	327
BmgT120I	GGNCC	4 cut(s)	289, 481, 521, 618
BmiI	GGNNCC	5 cut(s)	169, 290, 483, 522, 532
BmrFI	CCNGG	4 cut(s)	622, 670, 726, 816
BmsI	GCATC	2 cut(s)	382, 448
BpiI	GAAGAC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	186
BpuMI	CCSGG	2 cut(s)	622, 670
BsaAI	YACGTR	1 cut(s)	517
BsaHI	GRCGYC	2 cut(s)	66, 213
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	163, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	4 cut(s)	275, 286, 404, 565
Bse118I	RCCGGY	3 cut(s)	104, 275, 449
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	2 cut(s)	726, 816
BseDI	CCNNGG	2 cut(s)	163, 465
BseGI	GGATG	6 cut(s)	148, 331, 634, 768, 778, 871
BseLI	CCNNNNNNNGG	4 cut(s)	275, 286, 404, 565
BseMII	CTCAG	2 cut(s)	114, 729
BseNI	ACTGG	1 cut(s)	398
BsePI	GCGCGC	2 cut(s)	365, 367
BseRI	GAGGAG	1 cut(s)	797
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	5 cut(s)	64, 349, 646, 677, 808
BseYI	CCCAGC	1 cut(s)	583
BsgI	GTGCAG	1 cut(s)	653
Bsh1236I	CGCG	3 cut(s)	348, 367, 369
BshFI	GGCC	8 cut(s)	86, 279, 291, 298, 482, 537, 620, 724
BshNI	GGYRCC	1 cut(s)	167
BsiSI	CCGG	7 cut(s)	105, 276, 295, 450, 534, 621, 669
BslFI	GGGAC	2 cut(s)	246, 728
BslI	CCNNNNNNNGG	4 cut(s)	275, 286, 404, 565
BsmAI	GTCTC	1 cut(s)	313
BsmFI	GGGAC	2 cut(s)	246, 728
BsnI	GGCC	8 cut(s)	86, 279, 291, 298, 482, 537, 620, 724
Bso31I	GGTCTC	1 cut(s)	313
Bsp1286I	GDGCHC	2 cut(s)	172, 533
Bsp143I	GATC	1 cut(s)	251
BspACI	CCGC	9 cut(s)	43, 91, 346, 453, 527, 616, 650, 806, 879
BspANI	GGCC	8 cut(s)	86, 279, 291, 298, 482, 537, 620, 724
BspCNI	CTCAG	2 cut(s)	113, 730
BspFNI	CGCG	3 cut(s)	348, 367, 369
BspLI	GGNNCC	5 cut(s)	169, 290, 483, 522, 532
BspT107I	GGYRCC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	313
BsrBI	CCGCTC	1 cut(s)	616
BsrFI	RCCGGY	3 cut(s)	104, 275, 449
BsrI	ACTGG	1 cut(s)	398
BssAI	RCCGGY	3 cut(s)	104, 275, 449
BssECI	CCNNGG	2 cut(s)	163, 465
BssHII	GCGCGC	2 cut(s)	365, 367
BssMI	GATC	1 cut(s)	251
BssNI	GRCGYC	2 cut(s)	66, 213
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	2 cut(s)	726, 816
Bst4CI	ACNGT	2 cut(s)	388, 898
BstACI	GRCGYC	2 cut(s)	66, 213
BstBAI	YACGTR	1 cut(s)	517
BstC8I	GCNNGC	9 cut(s)	106, 130, 346, 367, 369, 451, 529, 618, 833
BstDEI	CTNAG	2 cut(s)	100, 738
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	6 cut(s)	148, 331, 634, 768, 778, 871
BstFNI	CGCG	3 cut(s)	348, 367, 369
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	5 cut(s)	367, 369, 371, 397, 422
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 83, 176, 368, 446, 543, 617
BstNI	CCWGG	2 cut(s)	726, 816
BstSCI	CCNGG	4 cut(s)	620, 668, 724, 814
BstSLI	GKGCMC	1 cut(s)	172
BstUI	CGCG	3 cut(s)	348, 367, 369
BstV1I	GCAGC	5 cut(s)	64, 349, 646, 677, 808
BstV2I	GAAGAC	1 cut(s)	211
BsuRI	GGCC	8 cut(s)	86, 279, 291, 298, 482, 537, 620, 724
BtgI	CCRYGG	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	6 cut(s)	148, 331, 634, 768, 778, 871
BtsIMutI	CAGTG	2 cut(s)	405, 894
Cac8I	GCNNGC	9 cut(s)	106, 130, 346, 367, 369, 451, 529, 618, 833
CaiI	CAGNNNCTG	1 cut(s)	404
CfoI	GCGC	5 cut(s)	367, 369, 371, 397, 422
Cfr10I	RCCGGY	3 cut(s)	104, 275, 449
Cfr13I	GGNCC	4 cut(s)	289, 481, 521, 618
CseI	GACGC	1 cut(s)	55
CviAII	CATG	3 cut(s)	70, 319, 850
DdeI	CTNAG	2 cut(s)	100, 738
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
DriI	GACNNNNNGTC	1 cut(s)	327
EaeI	YGGCCR	2 cut(s)	296, 535
Eam1105I	GACNNNNNGTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	533
Eco31I	GGTCTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	703
EcoO109I	RGGNCCY	2 cut(s)	289, 521
EcoRII	CCWGG	2 cut(s)	724, 814
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	3 cut(s)	73, 322, 853
FaqI	GGGAC	2 cut(s)	246, 728
FatI	CATG	3 cut(s)	69, 318, 849
FauI	CCCGC	5 cut(s)	50, 98, 353, 520, 609
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	5 cut(s)	78, 363, 635, 666, 822
FokI	GGATG	6 cut(s)	135, 318, 641, 775, 785, 878
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	5 cut(s)	78, 363, 635, 666, 822
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	5 cut(s)	366, 368, 370, 396, 421
GluI	GCNGC	5 cut(s)	78, 363, 635, 666, 822
GsaI	CCCAGC	1 cut(s)	587
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	8 cut(s)	86, 279, 291, 298, 482, 537, 620, 724
HapII	CCGG	7 cut(s)	105, 276, 295, 450, 534, 621, 669
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	5 cut(s)	367, 369, 371, 397, 422
Hin1I	GRCGYC	2 cut(s)	66, 213
Hin1II	CATG	3 cut(s)	73, 322, 853
Hin6I	GCGC	5 cut(s)	365, 367, 369, 395, 420
HinP1I	GCGC	5 cut(s)	365, 367, 369, 395, 420
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	872
HpaII	CCGG	7 cut(s)	105, 276, 295, 450, 534, 621, 669
HphI	GGTGA	6 cut(s)	109, 422, 467, 664, 691, 760
Hpy166II	GTNNAC	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	3 cut(s)	215, 218, 317
HpyCH4III	ACNGT	2 cut(s)	388, 898
HpyCH4IV	ACGT	2 cut(s)	213, 516
HpyCH4V	TGCA	4 cut(s)	546, 634, 824, 831
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 83, 176, 368, 446, 543, 617
HpyF3I	CTNAG	2 cut(s)	100, 738
HpySE526I	ACGT	2 cut(s)	213, 516
Hsp92I	GRCGYC	2 cut(s)	66, 213
Hsp92II	CATG	3 cut(s)	73, 322, 853
HspAI	GCGC	5 cut(s)	365, 367, 369, 395, 420
KroI	GCCGGC	2 cut(s)	104, 449
KroNI	GCCGGC	2 cut(s)	106, 451
Kzo9I	GATC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	536
Lsp1109I	GCAGC	5 cut(s)	64, 349, 646, 677, 808
LweI	GCATC	2 cut(s)	382, 448
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	2 cut(s)	213, 516
MaeIII	GTNAC	2 cut(s)	410, 508
MalI	GATC	1 cut(s)	253
MbiI	CCGCTC	1 cut(s)	616
MboI	GATC	1 cut(s)	251
MboII	GAAGA	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	172, 533
MluCI	AATT	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	606
MroNI	GCCGGC	2 cut(s)	104, 449
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	7 cut(s)	105, 276, 295, 450, 534, 621, 669
MspR9I	CCNGG	4 cut(s)	622, 670, 726, 816
MvaI	CCWGG	2 cut(s)	726, 816
MvnI	CGCG	3 cut(s)	348, 367, 369
MwoI	GCNNNNNNNGC	7 cut(s)	57, 83, 176, 368, 446, 543, 617
NaeI	GCCGGC	2 cut(s)	106, 451
NciI	CCSGG	2 cut(s)	622, 670
NdeII	GATC	1 cut(s)	251
NgoMIV	GCCGGC	2 cut(s)	104, 449
NlaIII	CATG	3 cut(s)	73, 322, 853
NlaIV	GGNNCC	5 cut(s)	169, 290, 483, 522, 532
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	1 cut(s)	410
OliI	CACNNNNGTG	1 cut(s)	227
PauI	GCGCGC	2 cut(s)	365, 367
PceI	AGGCCT	1 cut(s)	724
PdiI	GCCGGC	2 cut(s)	106, 451
PflFI	GACNNNGTC	1 cut(s)	215
PflMI	CCANNNNNTGG	2 cut(s)	404, 565
PkrI	GCNGC	5 cut(s)	79, 364, 636, 667, 823
Ppu21I	YACGTR	1 cut(s)	517
PpuMI	RGGWCCY	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	521
Psp6I	CCWGG	2 cut(s)	724, 814
PspFI	CCCAGC	1 cut(s)	583
PspGI	CCWGG	2 cut(s)	724, 814
PspN4I	GGNNCC	5 cut(s)	169, 290, 483, 522, 532
PspPI	GGNCC	4 cut(s)	289, 481, 521, 618
PspPPI	RGGWCCY	1 cut(s)	521
PstNI	CAGNNNCTG	1 cut(s)	404
PsyI	GACNNNGTC	1 cut(s)	215
PteI	GCGCGC	2 cut(s)	365, 367
RseI	CAYNNNNRTG	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	314
SatI	GCNGC	5 cut(s)	78, 363, 635, 666, 822
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	4 cut(s)	289, 481, 521, 618
ScrFI	CCNGG	4 cut(s)	622, 670, 726, 816
SduI	GDGCHC	2 cut(s)	172, 533
SetI	ASST	7 cut(s)	148, 169, 216, 510, 519, 876, 889
SfaNI	GCATC	2 cut(s)	382, 448
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	577
SseBI	AGGCCT	1 cut(s)	724
SsiI	CCGC	9 cut(s)	43, 91, 346, 453, 527, 616, 650, 806, 879
SspMI	CTAG	1 cut(s)	423
StuI	AGGCCT	1 cut(s)	724
StyD4I	CCNGG	4 cut(s)	620, 668, 724, 814
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	388, 898
TaiI	ACGT	2 cut(s)	216, 519
TaqI	TCGA	6 cut(s)	250, 264, 315, 390, 471, 674
TaqII	GACCGA	1 cut(s)	295
TasI	AATT	1 cut(s)	577
TscAI	CASTG	2 cut(s)	405, 901
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	5 cut(s)	77, 362, 634, 665, 821
Tsp45I	GTSAC	1 cut(s)	410
TspGWI	ACGGA	2 cut(s)	301, 454
TspRI	CASTG	2 cut(s)	405, 901
Tth111I	GACNNNGTC	1 cut(s)	215
Van91I	CCANNNNNTGG	2 cut(s)	404, 565
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	1 cut(s)	423
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.