Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004641

Physical Location & Seq

Genomic Coordinates Reverse (-)

18062750 .. 18065709

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0205500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGAACCTCTTAACCTCAAAACCCACCACCCTCCGATCCAAAAGGCAACCCTCCCAAAGGTCCCCACTCCTCTACCTCACCCTCCTCTTCTCCCTCCTCATCTTCCTCTTCTACTTCTTCTCCCTCAGCCCCAATTCCCTCCTCACCGCCCAACTTTCCCATTCCCCAAAATGCCCTTCTCTGGGTGGAGACAAGTTCCTCTGGTACGCCCCCCACAGTGGCTTCAGCAACCAGCTCATGGAGTTGAAGAACGGAATCTTGATGGCCGGCATTTTGAACCGGACGCTGGTTGTGCCGCCGGTTCTCGATCACCACGCTGTGGCTCTCGGGAGTTGCCCCAAGTTTCGGGTTTCGGCTCCGACTGAGATCAGGGGTGAGGTCTGGGACCATGTGGTTGAGCTCATTAGGAGTGGGAGGTATGTATCCATGGCTGACATTGTTGATATATCATCATTAGTTTCTTCTTCGTTAGTTCGAGTTATAGATTTCAGAGTTTTTATATCCTCATGGTGCAATGTGAACTTAGATTTTGCATGCCATAATGAGTTCAATGCACAGCCTTATTTGCTGGATAAGCTAAAGGAATGTGGATCTGTCCTAACTGGGGTCAAAGGTAATGTCAAGTGTTTATATGCTGTTAGTGAAGACTGCAGAACCACTGTTTGGACGTACCAAAATGGTAATGAGGATGGGGCATTAGATTCTTTTCAACCTGATGAAAAACTCAAGAAAAAGAAGGTTTCATATGTTAGGAAACGACGAGATGTATACAAGACTCTTGGACCGGGCTCTGAAGCTGAATCAGCTTCTGTGCTGGCATTTGGAAGCCTTTTCACTGCTCCTTACAAAGGTTCTGAGCTACTTATTGATATCCATGAATCTCCAAGAGATCAAAGGATAGGAAGTCTAATGGAGAAGATTGAGTTTCTTCCATTTGCTCCTGAAATTGTGAGTGCAGGAAAGAAGTTTGCTTTGGATACCATAAAGGCTCCTTTTCTATGTGCACAGCTTCGATTATTAGATGGGCAGTTTAAGAATCACCGGAAGGCTACTTTTCAAGGGCTAAAACAAAAGTTGGATGCTTTGATGCAGAGCCCTCTCCCCATTCATATCTTTGTGATGACTGATCTTCCTGAAAGTAATTGGACTGAAAATTACTTGGGGGATTTGGCTAGAGATTCAAATCAGTTTAAACTGTTTTTCCTGAAAGAAAGAGATGATTTGGTAATACAAACAGCTAAAAGAATTGTTGATGCCGGCCATGGCTTGAAGTTTGGGTCTGTTGCAAATATTCATGATGGAACTGATCAGATTAAGAAGGATTGTCCTTCTGCAGTAATACCCGATGTTCTTCTATACATAGAGCAAACTGTTTGCAGTTGTGCTTCTCTTGGATTTGTTGGGACTGCAGGATCAACTATTGCAGGGAGCATAGAGCTAATGAGAAAGTTTGGTGCATGTTCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

489

Amino Acids

54.28

Weight (kDa)

8.59

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71170 AT1G71180
fragaria_vesca	FvH4_5g29271
malus_domestica	MD15G1424900.v1.1 MD15G1425100.v1.1
prunus_persica	Prupe.1G570400_v2.0.a1 Prupe.1G570500_v2.0.a1
pyrus_communis	pycom15g37670 pycom15g37680
rosa_chinensis	RchiOBHm_Chr7g0222121
rosa_laevigata	RLG00000002095 RLG00000002096
rosa_multiflora	Rmu_co8329643.1_g000001 Rmu_co8348273.1_g000001 Rmu_sc0006951.1_g000005 Rmu_sc0006951.1_g000006 Rmu_sc0020366.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237440 Rroxscaffold_3G00237450
rosa_rugosa	Rorug07G0205500 Rorug07G0205600
rosa_samantha	Rh7AG346600 Rh7AG346700 Rh7BG336500 Rh7BG336600 Rh7CG363900 Rh7CG364000 Rh7DG344400 Rh7DG344500
rosa_wichuraiana	Rw7G029360 Rw7G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	238, 319, 663
AccI	GTMKAC	1 cut(s)	768
AciI	CCGC	2 cut(s)	147, 296
AclWI	GGATC	3 cut(s)	30, 598, 1420
AcoI	YGGCCR	2 cut(s)	264, 1258
AcuI	CTGAAG	2 cut(s)	208, 813
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	2 cut(s)	206, 671
AgsI	TTSAA	8 cut(s)	247, 277, 550, 710, 1058, 1182, 1270, 1464
AjuI	GAANNNNNNNTTGG	6 cut(s)	160, 192, 646, 678, 956, 988
Alw21I	GWGCWC	2 cut(s)	402, 1006
Alw26I	GTCTC	1 cut(s)	183
Alw44I	GTGCAC	1 cut(s)	1002
AlwI	GGATC	3 cut(s)	30, 598, 1420
AlwNI	CAGNNNCTG	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	2 cut(s)	264, 1258
ApaLI	GTGCAC	1 cut(s)	1002
ArsI	GACNNNNNNTTYG	2 cut(s)	603, 635
AspS9I	GGNCC	3 cut(s)	60, 385, 782
AsuC2I	CCSGG	1 cut(s)	786
AsuHPI	GGTGA	5 cut(s)	70, 136, 302, 386, 1031
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	3 cut(s)	60, 385, 782
BaeGI	GKGCMC	1 cut(s)	1006
BanII	GRGCYC	3 cut(s)	402, 791, 1097
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	2 cut(s)	402, 1006
BbvCI	CCTCAGC	1 cut(s)	125
BccI	CCATC	4 cut(s)	256, 683, 1016, 1292
BciVI	GTATCC	2 cut(s)	433, 970
BclI	TGATCA	1 cut(s)	1306
BcnI	CCSGG	1 cut(s)	786
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	1173
BfmI	CTRYAG	3 cut(s)	649, 1332, 1407
BfuI	GTATCC	2 cut(s)	433, 970
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	3 cut(s)	60, 385, 782
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	60, 385, 782
BmiI	GGNNCC	4 cut(s)	62, 357, 386, 990
BmrFI	CCNGG	1 cut(s)	786
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	3 cut(s)	1069, 1077, 1243
BmuI	ACTGGG	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	1 cut(s)	786
BsaBI	GATNNNNATC	1 cut(s)	1182
BsaJI	CCNNGG	2 cut(s)	426, 1261
BsaWI	WCCGGW	2 cut(s)	279, 1041
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bse118I	RCCGGY	3 cut(s)	266, 298, 1256
Bse1I	ACTGG	1 cut(s)	607
Bse3DI	GCAATG	1 cut(s)	520
Bse8I	GATNNNNATC	1 cut(s)	1182
BseDI	CCNNGG	2 cut(s)	426, 1261
BseGI	GGATG	2 cut(s)	694, 1084
BseJI	GATNNNNATC	1 cut(s)	1182
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	3 cut(s)	139, 354, 846
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	4 cut(s)	59, 74, 86, 131
BseSI	GKGCMC	1 cut(s)	1006
BsgI	GTGCAG	1 cut(s)	975
BshFI	GGCC	2 cut(s)	266, 1260
BsiHKAI	GWGCWC	2 cut(s)	402, 1006
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	6 cut(s)	267, 280, 299, 785, 1042, 1257
BslFI	GGGAC	3 cut(s)	46, 398, 1417
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	3 cut(s)	46, 398, 1417
BsnI	GGCC	2 cut(s)	266, 1260
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	4 cut(s)	402, 791, 1006, 1097
Bsp143I	GATC	8 cut(s)	35, 307, 366, 590, 889, 1126, 1306, 1412
Bsp19I	CCATGG	2 cut(s)	426, 1261
BspACI	CCGC	2 cut(s)	147, 296
BspANI	GGCC	2 cut(s)	266, 1260
BspCNI	CTCAG	3 cut(s)	138, 355, 847
BspHI	TCATGA	1 cut(s)	1294
BspLI	GGNNCC	4 cut(s)	62, 357, 386, 990
BspMAI	CTGCAG	3 cut(s)	653, 1336, 1411
BspPI	GGATC	3 cut(s)	30, 598, 1420
BsrDI	GCAATG	1 cut(s)	520
BsrFI	RCCGGY	3 cut(s)	266, 298, 1256
BsrI	ACTGG	1 cut(s)	607
BssAI	RCCGGY	3 cut(s)	266, 298, 1256
BssECI	CCNNGG	2 cut(s)	426, 1261
BssMI	GATC	8 cut(s)	35, 307, 366, 590, 889, 1126, 1306, 1412
BssNAI	GTATAC	1 cut(s)	769
BssT1I	CCWWGG	2 cut(s)	426, 1261
Bst1107I	GTATAC	1 cut(s)	769
Bst4CI	ACNGT	4 cut(s)	218, 661, 1197, 1372
Bst6I	CTCTTC	2 cut(s)	92, 113
BstC8I	GCNNGC	4 cut(s)	268, 535, 816, 1258
BstDEI	CTNAG	4 cut(s)	125, 363, 523, 855
BstDSI	CCRYGG	2 cut(s)	426, 1261
BstENI	CCTNNNNNAGG	2 cut(s)	55, 846
BstF5I	GGATG	2 cut(s)	694, 1084
BstKTI	GATC	8 cut(s)	38, 310, 369, 593, 892, 1129, 1309, 1415
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	8 cut(s)	35, 307, 366, 590, 889, 1126, 1306, 1412
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 565, 574, 803
BstNSI	RCATGY	2 cut(s)	537, 1461
BstSCI	CCNGG	1 cut(s)	784
BstSFI	CTRYAG	3 cut(s)	649, 1332, 1407
BstSLI	GKGCMC	1 cut(s)	1006
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BstZ17I	GTATAC	1 cut(s)	769
BsuI	GTATCC	2 cut(s)	433, 970
BsuRI	GGCC	2 cut(s)	266, 1260
BtgI	CCRYGG	2 cut(s)	426, 1261
BtsCI	GGATG	2 cut(s)	694, 1084
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	3 cut(s)	223, 657, 834
Cac8I	GCNNGC	4 cut(s)	268, 535, 816, 1258
CaiI	CAGNNNCTG	1 cut(s)	809
CciI	TCATGA	1 cut(s)	1294
Cfr10I	RCCGGY	3 cut(s)	266, 298, 1256
Cfr13I	GGNCC	3 cut(s)	60, 385, 782
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	205, 670
CviAII	CATG	9 cut(s)	238, 389, 427, 507, 534, 875, 1262, 1295, 1458
CviQI	GTAC	2 cut(s)	205, 670
DdeI	CTNAG	4 cut(s)	125, 363, 523, 855
DpnI	GATC	8 cut(s)	37, 309, 368, 592, 891, 1128, 1308, 1414
DpnII	GATC	8 cut(s)	35, 307, 366, 590, 889, 1126, 1306, 1412
DraI	TTTAAA	1 cut(s)	1192
DraIII	CACNNNGTG	1 cut(s)	319
EaeI	YGGCCR	2 cut(s)	264, 1258
Eam1104I	CTCTTC	2 cut(s)	92, 113
EarI	CTCTTC	2 cut(s)	92, 113
Ecl136II	GAGCTC	1 cut(s)	400
Eco130I	CCWWGG	2 cut(s)	426, 1261
Eco24I	GRGCYC	3 cut(s)	402, 791, 1097
Eco32I	GATATC	1 cut(s)	871
Eco47I	GGWCC	3 cut(s)	60, 385, 782
Eco53kI	GAGCTC	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	208, 813
Eco88I	CYCGRG	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	400
EcoNI	CCTNNNNNAGG	2 cut(s)	55, 846
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRV	GATATC	1 cut(s)	871
EcoT14I	CCWWGG	2 cut(s)	426, 1261
EcoT38I	GRGCYC	3 cut(s)	402, 791, 1097
ErhI	CCWWGG	2 cut(s)	426, 1261
FaeI	CATG	9 cut(s)	241, 392, 430, 510, 537, 878, 1265, 1298, 1461
FaqI	GGGAC	3 cut(s)	46, 398, 1417
FatI	CATG	9 cut(s)	237, 388, 426, 506, 533, 874, 1261, 1294, 1457
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	1 cut(s)	1306
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	1 cut(s)	296
FokI	GGATG	2 cut(s)	701, 1091
FriOI	GRGCYC	3 cut(s)	402, 791, 1097
Fsp4HI	GCNGC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	1173
GluI	GCNGC	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	266, 1260
HapII	CCGG	6 cut(s)	267, 280, 299, 785, 1042, 1257
HgaI	GACGC	1 cut(s)	292
Hin1II	CATG	9 cut(s)	241, 392, 430, 510, 537, 878, 1265, 1298, 1461
HinfI	GANTC	7 cut(s)	255, 701, 775, 800, 878, 1036, 1178
HpaII	CCGG	6 cut(s)	267, 280, 299, 785, 1042, 1257
HphI	GGTGA	5 cut(s)	70, 136, 302, 386, 1031
Hpy166II	GTNNAC	3 cut(s)	520, 769, 1004
Hpy188I	TCNGA	6 cut(s)	35, 360, 491, 793, 856, 1311
Hpy188III	TCNNGA	8 cut(s)	259, 305, 328, 727, 941, 1133, 1204, 1295
Hpy8I	GTNNAC	3 cut(s)	520, 769, 1004
Hpy99I	CGWCG	1 cut(s)	762
HpyAV	CCTTC	5 cut(s)	186, 730, 1039, 1312, 1338
HpyCH4III	ACNGT	4 cut(s)	218, 661, 1197, 1372
HpyCH4IV	ACGT	1 cut(s)	668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 565, 574, 803
HpyF3I	CTNAG	4 cut(s)	125, 363, 523, 855
HpySE526I	ACGT	1 cut(s)	668
Hsp92II	CATG	9 cut(s)	241, 392, 430, 510, 537, 878, 1265, 1298, 1461
KroI	GCCGGC	2 cut(s)	266, 1256
KroNI	GCCGGC	2 cut(s)	268, 1258
Ksp22I	TGATCA	1 cut(s)	1306
Kzo9I	GATC	8 cut(s)	35, 307, 366, 590, 889, 1126, 1306, 1412
LmnI	GCTCC	5 cut(s)	361, 844, 943, 994, 1428
LweI	GCATC	3 cut(s)	1069, 1077, 1243
MaeI	CTAG	1 cut(s)	1173
MaeII	ACGT	1 cut(s)	668
MalI	GATC	8 cut(s)	37, 309, 368, 592, 891, 1128, 1308, 1414
MboI	GATC	8 cut(s)	35, 307, 366, 590, 889, 1126, 1306, 1412
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	4 cut(s)	402, 791, 1006, 1097
MluCI	AATT	5 cut(s)	133, 945, 1141, 1153, 1245
MlyI	GAGTC	1 cut(s)	769
MmeI	TCCRAC	2 cut(s)	383, 1056
MroNI	GCCGGC	2 cut(s)	266, 1256
MseI	TTAA	4 cut(s)	11, 1032, 1191, 1314
MspI	CCGG	6 cut(s)	267, 280, 299, 785, 1042, 1257
MspR9I	CCNGG	1 cut(s)	786
MssI	GTTTAAAC	1 cut(s)	1192
MwoI	GCNNNNNNNGC	4 cut(s)	292, 565, 574, 803
NaeI	GCCGGC	2 cut(s)	268, 1258
NciI	CCSGG	1 cut(s)	786
NcoI	CCATGG	2 cut(s)	426, 1261
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	8 cut(s)	35, 307, 366, 590, 889, 1126, 1306, 1412
NgoMIV	GCCGGC	2 cut(s)	266, 1256
NlaIII	CATG	9 cut(s)	241, 392, 430, 510, 537, 878, 1265, 1298, 1461
NlaIV	GGNNCC	4 cut(s)	62, 357, 386, 990
NspI	RCATGY	2 cut(s)	537, 1461
PaeI	GCATGC	1 cut(s)	537
PagI	TCATGA	1 cut(s)	1294
PdiI	GCCGGC	2 cut(s)	268, 1258
PfeI	GAWTC	6 cut(s)	255, 701, 800, 878, 1036, 1178
PflMI	CCANNNNNTGG	3 cut(s)	238, 319, 663
PkrI	GCNGC	1 cut(s)	297
PleI	GAGTC	1 cut(s)	769
PmeI	GTTTAAAC	1 cut(s)	1192
PpsI	GAGTC	1 cut(s)	769
PpuMI	RGGWCCY	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	62, 357, 386, 990
PspPI	GGNCC	3 cut(s)	60, 385, 782
PspPPI	RGGWCCY	1 cut(s)	60
PstI	CTGCAG	3 cut(s)	653, 1336, 1411
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	590
RsaI	GTAC	2 cut(s)	206, 671
RsaNI	GTAC	2 cut(s)	205, 670
SacI	GAGCTC	1 cut(s)	402
SaqAI	TTAA	4 cut(s)	11, 1032, 1191, 1314
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	8 cut(s)	35, 307, 366, 590, 889, 1126, 1306, 1412
Sau96I	GGNCC	3 cut(s)	60, 385, 782
SchI	GAGTC	1 cut(s)	769
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	4 cut(s)	402, 791, 1006, 1097
SfaNI	GCATC	3 cut(s)	1069, 1077, 1243
SfcI	CTRYAG	3 cut(s)	649, 1332, 1407
SinI	GGWCC	3 cut(s)	60, 385, 782
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
SphI	GCATGC	1 cut(s)	537
Sse9I	AATT	5 cut(s)	133, 945, 1141, 1153, 1245
SsiI	CCGC	2 cut(s)	147, 296
SspI	AATATT	1 cut(s)	1291
SspMI	CTAG	1 cut(s)	1173
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	784
StyI	CCWWGG	2 cut(s)	426, 1261
TaaI	ACNGT	4 cut(s)	218, 661, 1197, 1372
TaiI	ACGT	1 cut(s)	671
TaqI	TCGA	3 cut(s)	306, 475, 1012
TasI	AATT	5 cut(s)	133, 945, 1141, 1153, 1245
TauI	GCSGC	1 cut(s)	298
TfiI	GAWTC	6 cut(s)	255, 701, 800, 878, 1036, 1178
Tru1I	TTAA	4 cut(s)	11, 1032, 1191, 1314
Tru9I	TTAA	4 cut(s)	11, 1032, 1191, 1314
TscAI	CASTG	3 cut(s)	223, 664, 841
TspDTI	ATGAA	6 cut(s)	17, 732, 732, 891, 1097, 1283
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	3 cut(s)	223, 664, 841
Van91I	CCANNNNNTGG	3 cut(s)	238, 319, 663
VneI	GTGCAC	1 cut(s)	1002
VpaK11BI	GGWCC	3 cut(s)	60, 385, 782
XagI	CCTNNNNNAGG	2 cut(s)	55, 846
XceI	RCATGY	2 cut(s)	537, 1461
XmiI	GTMKAC	1 cut(s)	768
XspI	CTAG	1 cut(s)	1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.