DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40030 AT2G40030 |
| fragaria_vesca | FvH4_7g03040 FvH4_7g03040 FvH4_7g03040 FvH4_7g03040 FvH4_7g03040 FvH4_7g03040 |
| malus_domestica | MD02G1287600.v1.1 MD07G1039700.v1.1 |
| prunus_persica | Prupe.2G035500_v2.0.a1 Prupe.2G035500_v2.0.a1 Prupe.2G035500_v2.0.a1 Prupe.2G035700_v2.0.a1 |
| pyrus_communis | pycom02g24380 pycom07g02760 |
| rosa_chinensis | RchiOBHm_Chr1g0324091 |
| rosa_laevigata | RLG00000030220 |
| rosa_roxburghii | Rroxscaffold_159G00432580 Rroxscaffold_4G00325860 |
| rosa_rugosa | Rorug01G0043200 |
| rosa_samantha | Rh1AG060100 Rh1BG051200 Rh1CG062200 Rh1DG066300 |
| rosa_wichuraiana | Rw1G005130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 4031 |
| Acc36I | ACCTGC | 1 cut(s) | 4817 |
| AccB1I | GGYRCC | 1 cut(s) | 2402 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 143, 419 |
| AccBSI | CCGCTC | 1 cut(s) | 5488 |
| AccI | GTMKAC | 4 cut(s) | 775, 1819, 4035, 4845 |
| AccII | CGCG | 2 cut(s) | 870, 2379 |
| AciI | CCGC | 8 cut(s) | 274, 445, 597, 704, 1485, 3107, 5488, 5555 |
| AclWI | GGATC | 9 cut(s) | 701, 714, 1239, 2261, 2470, 3024, 3182, 5207, 5220 |
| AcoI | YGGCCR | 4 cut(s) | 517, 1482, 1557, 2367 |
| AcuI | CTGAAG | 1 cut(s) | 210 |
| AdeI | CACNNNGTG | 1 cut(s) | 1349 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 143, 419, 620, 3161, 3433, 4287, 5178, 5222 |
| AflIII | ACRYGT | 3 cut(s) | 1884, 3500, 3685 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4072 |
| AhlI | ACTAGT | 1 cut(s) | 2236 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 406, 438, 1514, 1546, 5436, 5468 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 520, 552 |
| Alw21I | GWGCWC | 5 cut(s) | 1302, 2634, 3309, 3797, 3829 |
| Alw26I | GTCTC | 5 cut(s) | 572, 639, 3074, 4953, 5052 |
| Alw44I | GTGCAC | 1 cut(s) | 1298 |
| AlwI | GGATC | 9 cut(s) | 701, 714, 1239, 2261, 2470, 3024, 3182, 5207, 5220 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1555, 4064 |
| Ama87I | CYCGRG | 1 cut(s) | 3552 |
| ApaLI | GTGCAC | 1 cut(s) | 1298 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 647, 679 |
| AseI | ATTAAT | 1 cut(s) | 2910 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 323, 964, 1797 |
| AspLEI | GCGC | 3 cut(s) | 107, 3426, 5169 |
| AspS9I | GGNCC | 7 cut(s) | 1251, 1340, 2119, 2319, 2469, 3243, 3915 |
| AsuC2I | CCSGG | 1 cut(s) | 5270 |
| AsuII | TTCGAA | 1 cut(s) | 3924 |
| AvaI | CYCGRG | 1 cut(s) | 3552 |
| AvaII | GGWCC | 1 cut(s) | 2319 |
| BaeGI | GKGCMC | 3 cut(s) | 1302, 4409, 4598 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2739, 2772, 3690, 3723 |
| BalI | TGGCCA | 3 cut(s) | 519, 1559, 2369 |
| BamHI | GGATCC | 2 cut(s) | 706, 5212 |
| BanI | GGYRCC | 1 cut(s) | 2402 |
| BanII | GRGCYC | 2 cut(s) | 2634, 3829 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2185, 2217 |
| BauI | CACGAG | 1 cut(s) | 2301 |
| BbsI | GAAGAC | 2 cut(s) | 3913, 5248 |
| Bbv12I | GWGCWC | 5 cut(s) | 1302, 2634, 3309, 3797, 3829 |
| BceAI | ACGGC | 5 cut(s) | 2628, 3450, 4242, 4620, 4809 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 796, 830, 860, 894 |
| BciVI | GTATCC | 3 cut(s) | 617, 4153, 4492 |
| BclI | TGATCA | 4 cut(s) | 829, 1078, 3409, 5302 |
| BcnI | CCSGG | 1 cut(s) | 5270 |
| BcoDI | GTCTC | 5 cut(s) | 572, 639, 3074, 4953, 5052 |
| BcuI | ACTAGT | 1 cut(s) | 2236 |
| BfaI | CTAG | 5 cut(s) | 2237, 2466, 3857, 4413, 5469 |
| BfmI | CTRYAG | 6 cut(s) | 1672, 1737, 1820, 2419, 2751, 3819 |
| BfoI | RGCGCY | 1 cut(s) | 3427 |
| BfuAI | ACCTGC | 1 cut(s) | 4817 |
| BfuI | GTATCC | 3 cut(s) | 617, 4153, 4492 |
| BglII | AGATCT | 2 cut(s) | 3928, 3958 |
| BlpI | GCTNAGC | 4 cut(s) | 281, 346, 1448, 3166 |
| BmcAI | AGTACT | 1 cut(s) | 2687 |
| Bme18I | GGWCC | 1 cut(s) | 2319 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4072 |
| BmeT110I | CYCGRG | 1 cut(s) | 3552 |
| BmgT120I | GGNCC | 7 cut(s) | 1251, 1340, 2119, 2319, 2469, 3243, 3915 |
| BmiI | GGNNCC | 7 cut(s) | 708, 1253, 2114, 2404, 2471, 5214, 5492 |
| BmrI | ACTGGG | 4 cut(s) | 1005, 1384, 3988, 4123 |
| BmuI | ACTGGG | 4 cut(s) | 1005, 1384, 3988, 4123 |
| BpiI | GAAGAC | 2 cut(s) | 3913, 5248 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 28 |
| BpmI | CTGGAG | 6 cut(s) | 3281, 3886, 4048, 4835, 4929, 5520 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 281, 346, 1448, 3166 |
| Bpu14I | TTCGAA | 1 cut(s) | 3924 |
| BpuEI | CTTGAG | 5 cut(s) | 176, 558, 600, 2308, 3735 |
| BpuMI | CCSGG | 1 cut(s) | 5270 |
| BsaBI | GATNNNNATC | 2 cut(s) | 834, 5211 |
| BsaI | GGTCTC | 3 cut(s) | 572, 3074, 4953 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 5518, 5548, 5549 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 143, 419, 620, 3161, 3433, 4287, 5178, 5222 |
| Bse118I | RCCGGY | 1 cut(s) | 1588 |
| Bse3DI | GCAATG | 6 cut(s) | 1577, 1652, 1758, 2292, 2529, 2995 |
| Bse8I | GATNNNNATC | 2 cut(s) | 834, 5211 |
| BseJI | GATNNNNATC | 2 cut(s) | 834, 5211 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 143, 419, 620, 3161, 3433, 4287, 5178, 5222 |
| BseMI | GCAATG | 6 cut(s) | 1577, 1652, 1758, 2292, 2529, 2995 |
| BseMII | CTCAG | 8 cut(s) | 272, 806, 1174, 1181, 3180, 3242, 4131, 5538 |
| BseRI | GAGGAG | 1 cut(s) | 5144 |
| BseSI | GKGCMC | 3 cut(s) | 1302, 4409, 4598 |
| BseYI | CCCAGC | 3 cut(s) | 194, 2472, 4080 |
| BsgI | GTGCAG | 4 cut(s) | 2721, 3039, 3525, 3855 |
| Bsh1236I | CGCG | 2 cut(s) | 870, 2379 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1589 |
| BshNI | GGYRCC | 1 cut(s) | 2402 |
| BsiEI | CGRYCG | 1 cut(s) | 1589 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1302, 2634, 3309, 3797, 3829 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3552 |
| BsiSI | CCGG | 2 cut(s) | 1589, 5270 |
| BsiWI | CGTACG | 1 cut(s) | 5375 |
| BslFI | GGGAC | 6 cut(s) | 632, 2359, 3740, 4231, 4798, 4959 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 143, 419, 620, 3161, 3433, 4287, 5178, 5222 |
| BsmAI | GTCTC | 5 cut(s) | 572, 639, 3074, 4953, 5052 |
| BsmFI | GGGAC | 6 cut(s) | 632, 2359, 3740, 4231, 4798, 4959 |
| BsmI | GAATGC | 3 cut(s) | 343, 363, 5557 |
| Bso31I | GGTCTC | 3 cut(s) | 572, 3074, 4953 |
| BsoBI | CYCGRG | 1 cut(s) | 3552 |
| Bsp119I | TTCGAA | 1 cut(s) | 3924 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1302, 2634, 3309, 3797, 3829, 4409, 4598 |
| Bsp1407I | TGTACA | 1 cut(s) | 83 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 281, 346, 1448, 3166 |
| Bsp19I | CCATGG | 1 cut(s) | 5076 |
| Bsp68I | TCGCGA | 1 cut(s) | 2379 |
| BspACI | CCGC | 8 cut(s) | 274, 445, 597, 704, 1485, 3107, 5488, 5555 |
| BspCNI | CTCAG | 8 cut(s) | 273, 805, 1173, 1182, 3179, 3241, 4130, 5539 |
| BspFNI | CGCG | 2 cut(s) | 870, 2379 |
| BspHI | TCATGA | 1 cut(s) | 4642 |
| BspLI | GGNNCC | 7 cut(s) | 708, 1253, 2114, 2404, 2471, 5214, 5492 |
| BspMAI | CTGCAG | 2 cut(s) | 1676, 2755 |
| BspMI | ACCTGC | 1 cut(s) | 4817 |
| BspPI | GGATC | 9 cut(s) | 701, 714, 1239, 2261, 2470, 3024, 3182, 5207, 5220 |
| BspT104I | TTCGAA | 1 cut(s) | 3924 |
| BspT107I | GGYRCC | 1 cut(s) | 2402 |
| BspTNI | GGTCTC | 3 cut(s) | 572, 3074, 4953 |
| BsrBI | CCGCTC | 1 cut(s) | 5488 |
| BsrDI | GCAATG | 6 cut(s) | 1577, 1652, 1758, 2292, 2529, 2995 |
| BsrFI | RCCGGY | 1 cut(s) | 1588 |
| BsrGI | TGTACA | 1 cut(s) | 83 |
| BssAI | RCCGGY | 1 cut(s) | 1588 |
| BssNAI | GTATAC | 1 cut(s) | 776 |
| BssSI | CACGAG | 1 cut(s) | 2301 |
| BssT1I | CCWWGG | 3 cut(s) | 142, 3246, 5076 |
| Bst1107I | GTATAC | 1 cut(s) | 776 |
| Bst2BI | CACGAG | 1 cut(s) | 2301 |
| Bst6I | CTCTTC | 5 cut(s) | 19, 919, 982, 1059, 2581 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1122, 1610 |
| BstAUI | TGTACA | 1 cut(s) | 83 |
| BstBI | TTCGAA | 1 cut(s) | 3924 |
| BstDSI | CCRYGG | 2 cut(s) | 4224, 5076 |
| BstEII | GGTNACC | 1 cut(s) | 3149 |
| BstFNI | CGCG | 2 cut(s) | 870, 2379 |
| BstH2I | RGCGCY | 1 cut(s) | 3427 |
| BstHHI | GCGC | 3 cut(s) | 107, 3426, 5169 |
| BstMAI | GTCTC | 5 cut(s) | 572, 639, 3074, 4953, 5052 |
| BstMCI | CGRYCG | 1 cut(s) | 1589 |
| BstNSI | RCATGY | 4 cut(s) | 1888, 2709, 3504, 3689 |
| BstPI | GGTNACC | 1 cut(s) | 3149 |
| BstSFI | CTRYAG | 6 cut(s) | 1672, 1737, 1820, 2419, 2751, 3819 |
| BstSLI | GKGCMC | 3 cut(s) | 1302, 4409, 4598 |
| BstUI | CGCG | 2 cut(s) | 870, 2379 |
| BstV2I | GAAGAC | 2 cut(s) | 3913, 5248 |
| BstX2I | RGATCY | 8 cut(s) | 706, 1231, 2266, 2462, 3029, 3928, 3958, 5212 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 4156, 4495 |
| BstYI | RGATCY | 8 cut(s) | 706, 1231, 2266, 2462, 3029, 3928, 3958, 5212 |
| BstZ17I | GTATAC | 1 cut(s) | 776 |
| BsuI | GTATCC | 3 cut(s) | 617, 4153, 4492 |
| BtgI | CCRYGG | 2 cut(s) | 4224, 5076 |
| BtgZI | GCGATG | 1 cut(s) | 2394 |
| BtsI | GCAGTG | 4 cut(s) | 1274, 1681, 3444, 3795 |
| BtuMI | TCGCGA | 1 cut(s) | 2379 |
| BveI | ACCTGC | 1 cut(s) | 4817 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1555, 4064 |
| CciI | TCATGA | 1 cut(s) | 4642 |
| CfoI | GCGC | 3 cut(s) | 107, 3426, 5169 |
| Cfr10I | RCCGGY | 1 cut(s) | 1588 |
| Cfr13I | GGNCC | 7 cut(s) | 1251, 1340, 2119, 2319, 2469, 3243, 3915 |
| CseI | GACGC | 1 cut(s) | 4021 |
| CsiI | ACCWGGT | 1 cut(s) | 469 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 3265, 3300, 3514, 3549 |
| DraI | TTTAAA | 3 cut(s) | 2356, 2968, 4686 |
| DraIII | CACNNNGTG | 1 cut(s) | 1349 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4031 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4072 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4031 |
| EaeI | YGGCCR | 4 cut(s) | 517, 1482, 1557, 2367 |
| Eam1104I | CTCTTC | 5 cut(s) | 19, 919, 982, 1059, 2581 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4072 |
| EarI | CTCTTC | 5 cut(s) | 19, 919, 982, 1059, 2581 |
| Ecl136II | GAGCTC | 2 cut(s) | 2632, 3827 |
| Eco130I | CCWWGG | 3 cut(s) | 142, 3246, 5076 |
| Eco147I | AGGCCT | 2 cut(s) | 1195, 2820 |
| Eco24I | GRGCYC | 2 cut(s) | 2634, 3829 |
| Eco31I | GGTCTC | 3 cut(s) | 572, 3074, 4953 |
| Eco47I | GGWCC | 1 cut(s) | 2319 |
| Eco53kI | GAGCTC | 2 cut(s) | 2632, 3827 |
| Eco57I | CTGAAG | 1 cut(s) | 210 |
| Eco88I | CYCGRG | 1 cut(s) | 3552 |
| Eco91I | GGTNACC | 1 cut(s) | 3149 |
| EcoICRI | GAGCTC | 2 cut(s) | 2632, 3827 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1251, 2469 |
| EcoO65I | GGTNACC | 1 cut(s) | 3149 |
| EcoRI | GAATTC | 1 cut(s) | 4918 |
| EcoT14I | CCWWGG | 3 cut(s) | 142, 3246, 5076 |
| EcoT22I | ATGCAT | 3 cut(s) | 1006, 3295, 5190 |
| EcoT38I | GRGCYC | 2 cut(s) | 2634, 3829 |
| ErhI | CCWWGG | 3 cut(s) | 142, 3246, 5076 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 915, 947, 2724, 2756, 3459, 3491, 5127, 5159 |
| FaqI | GGGAC | 6 cut(s) | 632, 2359, 3740, 4231, 4798, 4959 |
| FauNDI | CATATG | 3 cut(s) | 1036, 2272, 3786 |
| FbaI | TGATCA | 4 cut(s) | 829, 1078, 3409, 5302 |
| FblI | GTMKAC | 4 cut(s) | 775, 1819, 4035, 4845 |
| FriOI | GRGCYC | 2 cut(s) | 2634, 3829 |
| FspBI | CTAG | 5 cut(s) | 2237, 2466, 3857, 4413, 5469 |
| GlaI | GCGC | 3 cut(s) | 106, 3425, 5168 |
| GsaI | CCCAGC | 3 cut(s) | 198, 2476, 4084 |
| GsuI | CTGGAG | 6 cut(s) | 3281, 3886, 4048, 4835, 4929, 5520 |
| HaeII | RGCGCY | 1 cut(s) | 3427 |
| HapII | CCGG | 2 cut(s) | 1589, 5270 |
| HgaI | GACGC | 1 cut(s) | 4021 |
| HhaI | GCGC | 3 cut(s) | 107, 3426, 5169 |
| Hin6I | GCGC | 3 cut(s) | 105, 3424, 5167 |
| HinP1I | GCGC | 3 cut(s) | 105, 3424, 5167 |
| HincII | GTYRAC | 4 cut(s) | 1696, 1959, 4036, 5364 |
| HindII | GTYRAC | 4 cut(s) | 1696, 1959, 4036, 5364 |
| HindIII | AAGCTT | 4 cut(s) | 3880, 4468, 4657, 4882 |
| HpaII | CCGG | 2 cut(s) | 1589, 5270 |
| Hpy99I | CGWCG | 2 cut(s) | 1153, 4037 |
| HpyCH4IV | ACGT | 5 cut(s) | 1151, 2698, 3349, 3804, 4068 |
| HpySE526I | ACGT | 5 cut(s) | 1151, 2698, 3349, 3804, 4068 |
| HspAI | GCGC | 3 cut(s) | 105, 3424, 5167 |
| Ksp22I | TGATCA | 4 cut(s) | 829, 1078, 3409, 5302 |
| LmnI | GCTCC | 8 cut(s) | 901, 1420, 2584, 3005, 3824, 4029, 5131, 5174 |
| MabI | ACCWGGT | 1 cut(s) | 469 |
| MaeI | CTAG | 5 cut(s) | 2237, 2466, 3857, 4413, 5469 |
| MaeII | ACGT | 5 cut(s) | 1151, 2698, 3349, 3804, 4068 |
| MaeIII | GTNAC | 6 cut(s) | 228, 2853, 3149, 3439, 5095, 5225 |
| MbiI | CCGCTC | 1 cut(s) | 5488 |
| MfeI | CAATTG | 4 cut(s) | 100, 437, 1478, 1985 |
| MflI | RGATCY | 8 cut(s) | 706, 1231, 2266, 2462, 3029, 3928, 3958, 5212 |
| MhlI | GDGCHC | 7 cut(s) | 1302, 2634, 3309, 3797, 3829, 4409, 4598 |
| MlsI | TGGCCA | 3 cut(s) | 519, 1559, 2369 |
| MluNI | TGGCCA | 3 cut(s) | 519, 1559, 2369 |
| MlyI | GAGTC | 7 cut(s) | 2048, 2060, 2341, 2460, 3029, 3305, 3742 |
| MmeI | TCCRAC | 4 cut(s) | 156, 2914, 3057, 4113 |
| Mox20I | TGGCCA | 3 cut(s) | 519, 1559, 2369 |
| Mph1103I | ATGCAT | 3 cut(s) | 1006, 3295, 5190 |
| MroXI | GAANNNNTTC | 3 cut(s) | 323, 964, 1797 |
| MscI | TGGCCA | 3 cut(s) | 519, 1559, 2369 |
| MslI | CAYNNNNRTG | 7 cut(s) | 2841, 3015, 4210, 4399, 4588, 4699, 4777 |
| Msp20I | TGGCCA | 3 cut(s) | 519, 1559, 2369 |
| MspA1I | CMGCKG | 4 cut(s) | 1444, 1487, 1745, 3626 |
| MspI | CCGG | 2 cut(s) | 1589, 5270 |
| MunI | CAATTG | 4 cut(s) | 100, 437, 1478, 1985 |
| Mva1269I | GAATGC | 3 cut(s) | 343, 363, 5557 |
| MvnI | CGCG | 2 cut(s) | 870, 2379 |
| NciI | CCSGG | 1 cut(s) | 5270 |
| NcoI | CCATGG | 1 cut(s) | 5076 |
| NdeI | CATATG | 3 cut(s) | 1036, 2272, 3786 |
| NlaIV | GGNNCC | 7 cut(s) | 708, 1253, 2114, 2404, 2471, 5214, 5492 |
| NmeAIII | GCCGAG | 1 cut(s) | 2717 |
| NmuCI | GTSAC | 3 cut(s) | 3149, 3439, 5225 |
| NruI | TCGCGA | 1 cut(s) | 2379 |
| NsiI | ATGCAT | 3 cut(s) | 1006, 3295, 5190 |
| NspI | RCATGY | 4 cut(s) | 1888, 2709, 3504, 3689 |
| NspV | TTCGAA | 1 cut(s) | 3924 |
| PagI | TCATGA | 1 cut(s) | 4642 |
| PceI | AGGCCT | 2 cut(s) | 1195, 2820 |
| PciI | ACATGT | 3 cut(s) | 1884, 3500, 3685 |
| PctI | GAATGC | 3 cut(s) | 343, 363, 5557 |
| PdmI | GAANNNNTTC | 3 cut(s) | 323, 964, 1797 |
| Pfl23II | CGTACG | 1 cut(s) | 5375 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 143, 419 |
| PfoI | TCCNGGA | 3 cut(s) | 1889, 5050, 5334 |
| PleI | GAGTC | 7 cut(s) | 2047, 2060, 2341, 2459, 3029, 3305, 3742 |
| PpsI | GAGTC | 7 cut(s) | 2047, 2060, 2341, 2459, 3029, 3305, 3742 |
| PscI | ACATGT | 3 cut(s) | 1884, 3500, 3685 |
| PshBI | ATTAAT | 1 cut(s) | 2910 |
| Psp124BI | GAGCTC | 2 cut(s) | 2634, 3829 |
| PspEI | GGTNACC | 1 cut(s) | 3149 |
| PspFI | CCCAGC | 3 cut(s) | 194, 2472, 4080 |
| PspLI | CGTACG | 1 cut(s) | 5375 |
| PspN4I | GGNNCC | 7 cut(s) | 708, 1253, 2114, 2404, 2471, 5214, 5492 |
| PspPI | GGNCC | 7 cut(s) | 1251, 1340, 2119, 2319, 2469, 3243, 3915 |
| PstI | CTGCAG | 2 cut(s) | 1676, 2755 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1555, 4064 |
| PsuI | RGATCY | 8 cut(s) | 706, 1231, 2266, 2462, 3029, 3928, 3958, 5212 |
| PvuII | CAGCTG | 3 cut(s) | 1444, 1745, 3626 |
| RruI | TCGCGA | 1 cut(s) | 2379 |
| RseI | CAYNNNNRTG | 7 cut(s) | 2841, 3015, 4210, 4399, 4588, 4699, 4777 |
| SacI | GAGCTC | 2 cut(s) | 2634, 3829 |
| SalI | GTCGAC | 1 cut(s) | 4034 |
| Sau96I | GGNCC | 7 cut(s) | 1251, 1340, 2119, 2319, 2469, 3243, 3915 |
| ScaI | AGTACT | 1 cut(s) | 2687 |
| SchI | GAGTC | 7 cut(s) | 2048, 2060, 2341, 2460, 3029, 3305, 3742 |
| SduI | GDGCHC | 7 cut(s) | 1302, 2634, 3309, 3797, 3829, 4409, 4598 |
| SexAI | ACCWGGT | 1 cut(s) | 469 |
| SfcI | CTRYAG | 6 cut(s) | 1672, 1737, 1820, 2419, 2751, 3819 |
| SfuI | TTCGAA | 1 cut(s) | 3924 |
| SinI | GGWCC | 1 cut(s) | 2319 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 2841, 3015, 4210, 4399, 4588, 4699, 4777 |
| SmlI | CTYRAG | 5 cut(s) | 155, 573, 615, 2323, 3750 |
| SmoI | CTYRAG | 5 cut(s) | 155, 573, 615, 2323, 3750 |
| SpeI | ACTAGT | 1 cut(s) | 2236 |
| SseBI | AGGCCT | 2 cut(s) | 1195, 2820 |
| SsiI | CCGC | 8 cut(s) | 274, 445, 597, 704, 1485, 3107, 5488, 5555 |
| SspI | AATATT | 7 cut(s) | 243, 1526, 1717, 1921, 2458, 3565, 5152 |
| SspMI | CTAG | 5 cut(s) | 2237, 2466, 3857, 4413, 5469 |
| SstI | GAGCTC | 2 cut(s) | 2634, 3829 |
| StuI | AGGCCT | 2 cut(s) | 1195, 2820 |
| StyI | CCWWGG | 3 cut(s) | 142, 3246, 5076 |
| TaiI | ACGT | 5 cut(s) | 1154, 2701, 3352, 3807, 4071 |
| TaqI | TCGA | 7 cut(s) | 1148, 1668, 2064, 3309, 3924, 4035, 5482 |
| TaqII | GACCGA | 2 cut(s) | 2307, 3259 |
| TatI | WGTACW | 3 cut(s) | 83, 2685, 5242 |
| TauI | GCSGC | 3 cut(s) | 448, 599, 1487 |
| TseFI | GTSAC | 3 cut(s) | 3149, 3439, 5225 |
| Tsp45I | GTSAC | 3 cut(s) | 3149, 3439, 5225 |
| TspGWI | ACGGA | 1 cut(s) | 5393 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 143, 419 |
| VneI | GTGCAC | 1 cut(s) | 1298 |
| VpaK11BI | GGWCC | 1 cut(s) | 2319 |
| VspI | ATTAAT | 1 cut(s) | 2910 |
| XceI | RCATGY | 4 cut(s) | 1888, 2709, 3504, 3689 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 474, 2444 |
| XmiI | GTMKAC | 4 cut(s) | 775, 1819, 4035, 4845 |
| XmnI | GAANNNNTTC | 3 cut(s) | 323, 964, 1797 |
| XspI | CTAG | 5 cut(s) | 2237, 2466, 3857, 4413, 5469 |
| ZrmI | AGTACT | 1 cut(s) | 2687 |
| Zsp2I | ATGCAT | 3 cut(s) | 1006, 3295, 5190 |