Protein of unknown function (DUF3223)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G40030 AT2G40030 |
| fragaria_vesca | FvH4_7g03040 FvH4_7g03040 FvH4_7g03040 FvH4_7g03040 FvH4_7g03040 FvH4_7g03040 |
| malus_domestica | MD02G1287600.v1.1 MD07G1039700.v1.1 |
| prunus_persica | Prupe.2G035500_v2.0.a1 Prupe.2G035500_v2.0.a1 Prupe.2G035500_v2.0.a1 Prupe.2G035700_v2.0.a1 |
| pyrus_communis | pycom02g24380 pycom07g02760 |
| rosa_chinensis | RchiOBHm_Chr1g0324091 |
| rosa_laevigata | RLG00000030220 |
| rosa_roxburghii | Rroxscaffold_159G00432580 Rroxscaffold_4G00325860 |
| rosa_rugosa | Rorug01G0043200 |
| rosa_samantha | Rh1AG060100 Rh1BG051200 Rh1CG062200 Rh1DG066300 |
| rosa_wichuraiana | Rw1G005130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1070 |
| Acc36I | ACCTGC | 1 cut(s) | 1721 |
| AccBSI | CCGCTC | 1 cut(s) | 2317 |
| AccI | GTMKAC | 2 cut(s) | 1074, 1749 |
| AccII | CGCG | 1 cut(s) | 746 |
| AciI | CCGC | 4 cut(s) | 182, 1458, 2317, 2366 |
| AclWI | GGATC | 4 cut(s) | 99, 257, 2108, 2121 |
| AcsI | RAATTY | 5 cut(s) | 38, 414, 550, 977, 1822 |
| AcuI | CTGAAG | 1 cut(s) | 897 |
| AfaI | GTAC | 8 cut(s) | 578, 612, 739, 1101, 1126, 2102, 2145, 2218 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 236, 472, 1818, 2079, 2123 |
| AflIII | ACRYGT | 2 cut(s) | 539, 724 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1111 |
| AjnI | CCWGG | 8 cut(s) | 522, 713, 1265, 1643, 1770, 1915, 1954, 2175 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2265, 2297 |
| AluBI | AGCT | 8 cut(s) | 665, 866, 921, 1119, 1185, 1374, 1563, 1788 |
| AluI | AGCT | 8 cut(s) | 665, 866, 921, 1119, 1185, 1374, 1563, 1788 |
| Alw21I | GWGCWC | 3 cut(s) | 348, 836, 868 |
| Alw26I | GTCTC | 3 cut(s) | 149, 1857, 2363 |
| AlwI | GGATC | 4 cut(s) | 99, 257, 2108, 2121 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1103 |
| Ama87I | CYCGRG | 1 cut(s) | 591 |
| AoxI | GGCC | 1 cut(s) | 953 |
| ApeKI | GCWGC | 3 cut(s) | 662, 1256, 1445 |
| ApoI | RAATTY | 5 cut(s) | 38, 414, 550, 977, 1822 |
| AspLEI | GCGC | 3 cut(s) | 465, 746, 2070 |
| AspS9I | GGNCC | 1 cut(s) | 954 |
| AsuII | TTCGAA | 2 cut(s) | 569, 963 |
| AvaI | CYCGRG | 1 cut(s) | 591 |
| BaeGI | GKGCMC | 2 cut(s) | 1313, 1502 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 18, 51 |
| BamHI | GGATCC | 1 cut(s) | 2113 |
| BanII | GRGCYC | 1 cut(s) | 868 |
| BbsI | GAAGAC | 1 cut(s) | 952 |
| Bbv12I | GWGCWC | 3 cut(s) | 348, 836, 868 |
| BbvI | GCAGC | 3 cut(s) | 674, 1243, 1432 |
| BccI | CCATC | 6 cut(s) | 401, 413, 481, 1341, 1811, 2102 |
| BceAI | ACGGC | 3 cut(s) | 489, 1335, 1713 |
| BciT130I | CCWGG | 8 cut(s) | 524, 715, 1267, 1645, 1772, 1917, 1956, 2177 |
| BciVI | GTATCC | 1 cut(s) | 1396 |
| BclI | TGATCA | 1 cut(s) | 448 |
| BcoDI | GTCTC | 3 cut(s) | 149, 1857, 2363 |
| BfaI | CTAG | 2 cut(s) | 896, 2298 |
| BfmI | CTRYAG | 2 cut(s) | 30, 858 |
| BfoI | RGCGCY | 1 cut(s) | 466 |
| BfuAI | ACCTGC | 1 cut(s) | 1721 |
| BfuI | GTATCC | 1 cut(s) | 1396 |
| BglII | AGATCT | 2 cut(s) | 967, 997 |
| BisI | GCNGC | 3 cut(s) | 663, 1257, 1446 |
| BlpI | GCTNAGC | 1 cut(s) | 241 |
| BlsI | GCNGC | 3 cut(s) | 664, 1258, 1447 |
| Bme1390I | CCNGG | 8 cut(s) | 524, 715, 1267, 1645, 1772, 1917, 1956, 2177 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1111 |
| BmeT110I | CYCGRG | 1 cut(s) | 591 |
| BmgT120I | GGNCC | 1 cut(s) | 954 |
| BmiI | GGNNCC | 2 cut(s) | 2115, 2321 |
| BmrFI | CCNGG | 8 cut(s) | 524, 715, 1267, 1645, 1772, 1917, 1956, 2177 |
| BmrI | ACTGGG | 1 cut(s) | 1027 |
| BmuI | ACTGGG | 1 cut(s) | 1027 |
| BpiI | GAAGAC | 1 cut(s) | 952 |
| BpmI | CTGGAG | 3 cut(s) | 925, 1087, 2331 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 241 |
| Bpu14I | TTCGAA | 2 cut(s) | 569, 963 |
| BpuEI | CTTGAG | 1 cut(s) | 774 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2112 |
| BsaI | GGTCTC | 2 cut(s) | 149, 1857 |
| BsaJI | CCNNGG | 7 cut(s) | 714, 1266, 1644, 1770, 1916, 1980, 2031 |
| BsaWI | WCCGGW | 1 cut(s) | 1811 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 2329, 2359, 2360 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 236, 472, 1818, 2079, 2123 |
| Bse1I | ACTGG | 9 cut(s) | 362, 745, 942, 1022, 1070, 1392, 1581, 1745, 2060 |
| Bse3DI | GCAATG | 1 cut(s) | 70 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2112 |
| BseBI | CCWGG | 8 cut(s) | 524, 715, 1267, 1645, 1772, 1917, 1956, 2177 |
| BseDI | CCNNGG | 7 cut(s) | 714, 1266, 1644, 1770, 1916, 1980, 2031 |
| BseGI | GGATG | 4 cut(s) | 393, 1177, 1366, 1780 |
| BseJI | GATNNNNATC | 1 cut(s) | 2112 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 236, 472, 1818, 2079, 2123 |
| BseMI | GCAATG | 1 cut(s) | 70 |
| BseMII | CTCAG | 2 cut(s) | 255, 2349 |
| BseNI | ACTGG | 9 cut(s) | 362, 745, 942, 1022, 1070, 1392, 1581, 1745, 2060 |
| BseRI | GAGGAG | 2 cut(s) | 1551, 2048 |
| BseSI | GKGCMC | 2 cut(s) | 1313, 1502 |
| BseXI | GCAGC | 3 cut(s) | 674, 1243, 1432 |
| BseYI | CCCAGC | 1 cut(s) | 1119 |
| BsgI | GTGCAG | 2 cut(s) | 114, 564 |
| Bsh1236I | CGCG | 1 cut(s) | 746 |
| BshFI | GGCC | 1 cut(s) | 955 |
| BsiHKAI | GWGCWC | 3 cut(s) | 348, 836, 868 |
| BsiHKCI | CYCGRG | 1 cut(s) | 591 |
| BsiSI | CCGG | 1 cut(s) | 1812 |
| BsiWI | CGTACG | 1 cut(s) | 2216 |
| BslFI | GGGAC | 3 cut(s) | 779, 1702, 1863 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 236, 472, 1818, 2079, 2123 |
| BsmAI | GTCTC | 3 cut(s) | 149, 1857, 2363 |
| BsmBI | CGTCTC | 1 cut(s) | 2363 |
| BsmFI | GGGAC | 3 cut(s) | 779, 1702, 1863 |
| BsmI | GAATGC | 1 cut(s) | 2368 |
| BsnI | GGCC | 1 cut(s) | 955 |
| Bso31I | GGTCTC | 2 cut(s) | 149, 1857 |
| BsoBI | CYCGRG | 1 cut(s) | 591 |
| Bsp119I | TTCGAA | 2 cut(s) | 569, 963 |
| Bsp1286I | GDGCHC | 5 cut(s) | 348, 836, 868, 1313, 1502 |
| Bsp143I | GATC | 7 cut(s) | 104, 262, 448, 886, 967, 997, 2113 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 241 |
| Bsp19I | CCATGG | 1 cut(s) | 1980 |
| BspACI | CCGC | 4 cut(s) | 182, 1458, 2317, 2366 |
| BspANI | GGCC | 1 cut(s) | 955 |
| BspCNI | CTCAG | 2 cut(s) | 254, 2350 |
| BspFNI | CGCG | 1 cut(s) | 746 |
| BspHI | TCATGA | 1 cut(s) | 1546 |
| BspLI | GGNNCC | 2 cut(s) | 2115, 2321 |
| BspMAI | CTGCAG | 1 cut(s) | 34 |
| BspMI | ACCTGC | 1 cut(s) | 1721 |
| BspPI | GGATC | 4 cut(s) | 99, 257, 2108, 2121 |
| BspT104I | TTCGAA | 2 cut(s) | 569, 963 |
| BspTNI | GGTCTC | 2 cut(s) | 149, 1857 |
| BsrBI | CCGCTC | 1 cut(s) | 2317 |
| BsrDI | GCAATG | 1 cut(s) | 70 |
| BsrI | ACTGG | 9 cut(s) | 362, 745, 942, 1022, 1070, 1392, 1581, 1745, 2060 |
| BssECI | CCNNGG | 7 cut(s) | 714, 1266, 1644, 1770, 1916, 1980, 2031 |
| BssMI | GATC | 7 cut(s) | 104, 262, 448, 886, 967, 997, 2113 |
| BssT1I | CCWWGG | 1 cut(s) | 1980 |
| Bst2UI | CCWGG | 8 cut(s) | 524, 715, 1267, 1645, 1772, 1917, 1956, 2177 |
| Bst4CI | ACNGT | 7 cut(s) | 343, 633, 1093, 1940, 1999, 2121, 2213 |
| BstBI | TTCGAA | 2 cut(s) | 569, 963 |
| BstC8I | GCNNGC | 6 cut(s) | 694, 1372, 1456, 1470, 1561, 1786 |
| BstDEI | CTNAG | 4 cut(s) | 241, 1947, 2330, 2358 |
| BstDSI | CCRYGG | 1 cut(s) | 1980 |
| BstEII | GGTNACC | 1 cut(s) | 224 |
| BstF5I | GGATG | 4 cut(s) | 393, 1177, 1366, 1780 |
| BstFNI | CGCG | 1 cut(s) | 746 |
| BstH2I | RGCGCY | 1 cut(s) | 466 |
| BstHHI | GCGC | 3 cut(s) | 465, 746, 2070 |
| BstKTI | GATC | 7 cut(s) | 107, 265, 451, 889, 970, 1000, 2116 |
| BstMAI | GTCTC | 3 cut(s) | 149, 1857, 2363 |
| BstMBI | GATC | 7 cut(s) | 104, 262, 448, 886, 967, 997, 2113 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 872, 1262, 1451, 1640, 2065 |
| BstNI | CCWGG | 8 cut(s) | 524, 715, 1267, 1645, 1772, 1917, 1956, 2177 |
| BstNSI | RCATGY | 3 cut(s) | 543, 728, 2042 |
| BstPI | GGTNACC | 1 cut(s) | 224 |
| BstSCI | CCNGG | 8 cut(s) | 522, 713, 1265, 1643, 1770, 1915, 1954, 2175 |
| BstSFI | CTRYAG | 2 cut(s) | 30, 858 |
| BstSLI | GKGCMC | 2 cut(s) | 1313, 1502 |
| BstUI | CGCG | 1 cut(s) | 746 |
| BstV1I | GCAGC | 3 cut(s) | 674, 1243, 1432 |
| BstV2I | GAAGAC | 1 cut(s) | 952 |
| BstX2I | RGATCY | 4 cut(s) | 104, 967, 997, 2113 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1399 |
| BstYI | RGATCY | 4 cut(s) | 104, 967, 997, 2113 |
| BsuI | GTATCC | 1 cut(s) | 1396 |
| BsuRI | GGCC | 1 cut(s) | 955 |
| BtgI | CCRYGG | 1 cut(s) | 1980 |
| BtsCI | GGATG | 4 cut(s) | 393, 1177, 1366, 1780 |
| BtsI | GCAGTG | 3 cut(s) | 70, 483, 834 |
| BveI | ACCTGC | 1 cut(s) | 1721 |
| Cac8I | GCNNGC | 6 cut(s) | 694, 1372, 1456, 1470, 1561, 1786 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1103 |
| CciI | TCATGA | 1 cut(s) | 1546 |
| CfoI | GCGC | 3 cut(s) | 465, 746, 2070 |
| Cfr13I | GGNCC | 1 cut(s) | 954 |
| CseI | GACGC | 1 cut(s) | 1060 |
| Csp6I | GTAC | 8 cut(s) | 577, 611, 738, 1100, 1125, 2101, 2144, 2217 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 304, 339 |
| CviQI | GTAC | 8 cut(s) | 577, 611, 738, 1100, 1125, 2101, 2144, 2217 |
| DdeI | CTNAG | 4 cut(s) | 241, 1947, 2330, 2358 |
| DpnI | GATC | 7 cut(s) | 106, 264, 450, 888, 969, 999, 2115 |
| DpnII | GATC | 7 cut(s) | 104, 262, 448, 886, 967, 997, 2113 |
| DraI | TTTAAA | 1 cut(s) | 1590 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1070 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1111 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1070 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1111 |
| Ecl136II | GAGCTC | 1 cut(s) | 866 |
| Eco130I | CCWWGG | 1 cut(s) | 1980 |
| Eco24I | GRGCYC | 1 cut(s) | 868 |
| Eco31I | GGTCTC | 2 cut(s) | 149, 1857 |
| Eco53kI | GAGCTC | 1 cut(s) | 866 |
| Eco57I | CTGAAG | 1 cut(s) | 897 |
| Eco88I | CYCGRG | 1 cut(s) | 591 |
| Eco91I | GGTNACC | 1 cut(s) | 224 |
| EcoICRI | GAGCTC | 1 cut(s) | 866 |
| EcoO65I | GGTNACC | 1 cut(s) | 224 |
| EcoRI | GAATTC | 1 cut(s) | 1822 |
| EcoRII | CCWGG | 8 cut(s) | 522, 713, 1265, 1643, 1770, 1915, 1954, 2175 |
| EcoT14I | CCWWGG | 1 cut(s) | 1980 |
| EcoT22I | ATGCAT | 2 cut(s) | 334, 2091 |
| EcoT38I | GRGCYC | 1 cut(s) | 868 |
| ErhI | CCWWGG | 1 cut(s) | 1980 |
| Esp3I | CGTCTC | 1 cut(s) | 2363 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 498, 530 |
| FaqI | GGGAC | 3 cut(s) | 779, 1702, 1863 |
| FauI | CCCGC | 1 cut(s) | 1451 |
| FauNDI | CATATG | 1 cut(s) | 825 |
| FbaI | TGATCA | 1 cut(s) | 448 |
| FblI | GTMKAC | 2 cut(s) | 1074, 1749 |
| Fnu4HI | GCNGC | 3 cut(s) | 663, 1257, 1446 |
| FokI | GGATG | 4 cut(s) | 380, 1184, 1373, 1787 |
| FriOI | GRGCYC | 1 cut(s) | 868 |
| Fsp4HI | GCNGC | 3 cut(s) | 663, 1257, 1446 |
| FspBI | CTAG | 2 cut(s) | 896, 2298 |
| GlaI | GCGC | 3 cut(s) | 464, 745, 2069 |
| GluI | GCNGC | 3 cut(s) | 663, 1257, 1446 |
| GsaI | CCCAGC | 1 cut(s) | 1123 |
| GsuI | CTGGAG | 3 cut(s) | 925, 1087, 2331 |
| HaeII | RGCGCY | 1 cut(s) | 466 |
| HaeIII | GGCC | 1 cut(s) | 955 |
| HapII | CCGG | 1 cut(s) | 1812 |
| HgaI | GACGC | 1 cut(s) | 1060 |
| HhaI | GCGC | 3 cut(s) | 465, 746, 2070 |
| Hin6I | GCGC | 3 cut(s) | 463, 744, 2068 |
| HinP1I | GCGC | 3 cut(s) | 463, 744, 2068 |
| HincII | GTYRAC | 2 cut(s) | 1075, 2205 |
| HindII | GTYRAC | 2 cut(s) | 1075, 2205 |
| HindIII | AAGCTT | 5 cut(s) | 919, 1183, 1372, 1561, 1786 |
| HpaII | CCGG | 1 cut(s) | 1812 |
| Hpy166II | GTNNAC | 9 cut(s) | 68, 636, 722, 800, 1075, 1750, 1832, 2025, 2205 |
| Hpy188I | TCNGA | 4 cut(s) | 109, 504, 2032, 2078 |
| Hpy188III | TCNNGA | 8 cut(s) | 266, 419, 791, 1004, 1358, 1547, 2312, 2348 |
| Hpy8I | GTNNAC | 9 cut(s) | 68, 636, 722, 800, 1075, 1750, 1832, 2025, 2205 |
| Hpy99I | CGWCG | 1 cut(s) | 1076 |
| HpyAV | CCTTC | 5 cut(s) | 143, 368, 1045, 1883, 2073 |
| HpyCH4III | ACNGT | 7 cut(s) | 343, 633, 1093, 1940, 1999, 2121, 2213 |
| HpyCH4IV | ACGT | 3 cut(s) | 388, 843, 1107 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 872, 1262, 1451, 1640, 2065 |
| HpyF3I | CTNAG | 4 cut(s) | 241, 1947, 2330, 2358 |
| HpySE526I | ACGT | 3 cut(s) | 388, 843, 1107 |
| HspAI | GCGC | 3 cut(s) | 463, 744, 2068 |
| Ksp22I | TGATCA | 1 cut(s) | 448 |
| Kzo9I | GATC | 7 cut(s) | 104, 262, 448, 886, 967, 997, 2113 |
| LmnI | GCTCC | 5 cut(s) | 80, 863, 1068, 2035, 2075 |
| Lsp1109I | GCAGC | 3 cut(s) | 674, 1243, 1432 |
| MaeI | CTAG | 2 cut(s) | 896, 2298 |
| MaeII | ACGT | 3 cut(s) | 388, 843, 1107 |
| MaeIII | GTNAC | 4 cut(s) | 224, 478, 1999, 2126 |
| MalI | GATC | 7 cut(s) | 106, 264, 450, 888, 969, 999, 2115 |
| MbiI | CCGCTC | 1 cut(s) | 2317 |
| MboI | GATC | 7 cut(s) | 104, 262, 448, 886, 967, 997, 2113 |
| MflI | RGATCY | 4 cut(s) | 104, 967, 997, 2113 |
| MhlI | GDGCHC | 5 cut(s) | 348, 836, 868, 1313, 1502 |
| MlyI | GAGTC | 2 cut(s) | 104, 781 |
| MmeI | TCCRAC | 1 cut(s) | 132 |
| Mph1103I | ATGCAT | 2 cut(s) | 334, 2091 |
| MseI | TTAA | 2 cut(s) | 1589, 2157 |
| MslI | CAYNNNNRTG | 6 cut(s) | 90, 1225, 1303, 1492, 1603, 1681 |
| MspA1I | CMGCKG | 1 cut(s) | 665 |
| MspI | CCGG | 1 cut(s) | 1812 |
| MspR9I | CCNGG | 8 cut(s) | 524, 715, 1267, 1645, 1772, 1917, 1956, 2177 |
| Mva1269I | GAATGC | 1 cut(s) | 2368 |
| MvaI | CCWGG | 8 cut(s) | 524, 715, 1267, 1645, 1772, 1917, 1956, 2177 |
| MvnI | CGCG | 1 cut(s) | 746 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 872, 1262, 1451, 1640, 2065 |
| NcoI | CCATGG | 1 cut(s) | 1980 |
| NdeI | CATATG | 1 cut(s) | 825 |
| NdeII | GATC | 7 cut(s) | 104, 262, 448, 886, 967, 997, 2113 |
| NlaIV | GGNNCC | 2 cut(s) | 2115, 2321 |
| NmuCI | GTSAC | 3 cut(s) | 224, 478, 2126 |
| NsiI | ATGCAT | 2 cut(s) | 334, 2091 |
| NspI | RCATGY | 3 cut(s) | 543, 728, 2042 |
| NspV | TTCGAA | 2 cut(s) | 569, 963 |
| PagI | TCATGA | 1 cut(s) | 1546 |
| PciI | ACATGT | 2 cut(s) | 539, 724 |
| PctI | GAATGC | 1 cut(s) | 2368 |
| Pfl23II | CGTACG | 1 cut(s) | 2216 |
| PfoI | TCCNGGA | 1 cut(s) | 2175 |
| PkrI | GCNGC | 3 cut(s) | 664, 1258, 1447 |
| PleI | GAGTC | 2 cut(s) | 104, 781 |
| PpsI | GAGTC | 2 cut(s) | 104, 781 |
| PscI | ACATGT | 2 cut(s) | 539, 724 |
| Psp124BI | GAGCTC | 1 cut(s) | 868 |
| Psp6I | CCWGG | 8 cut(s) | 522, 713, 1265, 1643, 1770, 1915, 1954, 2175 |
| PspEI | GGTNACC | 1 cut(s) | 224 |
| PspFI | CCCAGC | 1 cut(s) | 1119 |
| PspGI | CCWGG | 8 cut(s) | 522, 713, 1265, 1643, 1770, 1915, 1954, 2175 |
| PspLI | CGTACG | 1 cut(s) | 2216 |
| PspN4I | GGNNCC | 2 cut(s) | 2115, 2321 |
| PspPI | GGNCC | 1 cut(s) | 954 |
| PstI | CTGCAG | 1 cut(s) | 34 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1103 |
| PsuI | RGATCY | 4 cut(s) | 104, 967, 997, 2113 |
| PvuII | CAGCTG | 1 cut(s) | 665 |
| RsaI | GTAC | 8 cut(s) | 578, 612, 739, 1101, 1126, 2102, 2145, 2218 |
| RsaNI | GTAC | 8 cut(s) | 577, 611, 738, 1100, 1125, 2101, 2144, 2217 |
| RseI | CAYNNNNRTG | 6 cut(s) | 90, 1225, 1303, 1492, 1603, 1681 |
| SacI | GAGCTC | 1 cut(s) | 868 |
| SalI | GTCGAC | 1 cut(s) | 1073 |
| SaqAI | TTAA | 2 cut(s) | 1589, 2157 |
| SatI | GCNGC | 3 cut(s) | 663, 1257, 1446 |
| Sau3AI | GATC | 7 cut(s) | 104, 262, 448, 886, 967, 997, 2113 |
| Sau96I | GGNCC | 1 cut(s) | 954 |
| SchI | GAGTC | 2 cut(s) | 104, 781 |
| ScrFI | CCNGG | 8 cut(s) | 524, 715, 1267, 1645, 1772, 1917, 1956, 2177 |
| SduI | GDGCHC | 5 cut(s) | 348, 836, 868, 1313, 1502 |
| SfcI | CTRYAG | 2 cut(s) | 30, 858 |
| SfuI | TTCGAA | 2 cut(s) | 569, 963 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 90, 1225, 1303, 1492, 1603, 1681 |
| SmlI | CTYRAG | 1 cut(s) | 789 |
| SmoI | CTYRAG | 1 cut(s) | 789 |
| SsiI | CCGC | 4 cut(s) | 182, 1458, 2317, 2366 |
| SspI | AATATT | 2 cut(s) | 604, 2053 |
| SspMI | CTAG | 2 cut(s) | 896, 2298 |
| SstI | GAGCTC | 1 cut(s) | 868 |
| StyD4I | CCNGG | 8 cut(s) | 522, 713, 1265, 1643, 1770, 1915, 1954, 2175 |
| StyI | CCWWGG | 1 cut(s) | 1980 |
| TaaI | ACNGT | 7 cut(s) | 343, 633, 1093, 1940, 1999, 2121, 2213 |
| TaiI | ACGT | 3 cut(s) | 391, 846, 1110 |
| TaqI | TCGA | 5 cut(s) | 348, 569, 963, 1074, 2311 |
| TaqII | GACCGA | 1 cut(s) | 2023 |
| TatI | WGTACW | 1 cut(s) | 2143 |
| Tru1I | TTAA | 2 cut(s) | 1589, 2157 |
| Tru9I | TTAA | 2 cut(s) | 1589, 2157 |
| TseFI | GTSAC | 3 cut(s) | 224, 478, 2126 |
| TseI | GCWGC | 3 cut(s) | 662, 1256, 1445 |
| Tsp45I | GTSAC | 3 cut(s) | 224, 478, 2126 |
| TspDTI | ATGAA | 4 cut(s) | 918, 2148, 2220, 2269 |
| TspGWI | ACGGA | 2 cut(s) | 635, 2234 |
| XapI | RAATTY | 5 cut(s) | 38, 414, 550, 977, 1822 |
| XceI | RCATGY | 3 cut(s) | 543, 728, 2042 |
| XmiI | GTMKAC | 2 cut(s) | 1074, 1749 |
| XspI | CTAG | 2 cut(s) | 896, 2298 |
| Zsp2I | ATGCAT | 2 cut(s) | 334, 2091 |