Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006776

Physical Location & Seq

Genomic Coordinates Forward (+)

4356935 .. 4361303

Gene Structure 4369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G040100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTGTGATTTAGTAGCCCGTACGGGTCGGCATCAGCAACGCTACGAGGCCGGTTGTCGCCTTGTTGCCGGGTGTATTCCATTTAGATACAAAAATTCTGATGAGACTGGTGATGCCAATTCTGAGAAGATTATTGAGGTGCTTATGATTAACTCACCTAGTGGACCAGGCCTTTTGTTCCCAAAGGGAGGCTGGGAAAATGATGAAACCGTTGAGGAAGCTGCAGTAAGGGAGGCTGTTGAAGAAGCTGGAGTTCGAGGAGAGCTAATGGATTTCCTGGGCTTTTATCATTTTAAGAGTAAAACACACCAGGATGAGTTCAGCCCGGAAGGTGTATGTAGAGCTGCTATGTTTGCTTTGTTTGTCAAGGAGGAGCTTGAGTCATGGCCCGAACAGAGCACCCGAAATAGAACTTGGCTGACTGTAGCAGAGGCCTTTGTCAGTTGCCGGCATGCATGGATGAGAGAGGCCTTGCAGGATGGCTTCTCAAAGTGGCATGCAGAAAAGATGATTAGTGCAAGCAATGATGTAACGTTGAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

182

Amino Acids

20.45

Weight (kDa)

5.09

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12600 AT3G12600
fragaria_vesca	FvH4_7g03460 FvH4_7g03460
malus_domestica	MD02G1282400.v1.1 MD07G1048400.v1.1 MD14G1088400.v1.1
prunus_persica	Prupe.2G040100_v2.0.a1 Prupe.2G040100_v2.0.a1 Prupe.2G040100_v2.0.a1 Prupe.7G038300_v2.0.a1
pyrus_communis	pycom02g24100 pycom14g07850
rosa_chinensis	RchiOBHm_Chr1g0325791
rosa_laevigata	RLG00000030104
rosa_multiflora	Rmu_sc0012571.1_g000002 Rmu_sc0021974.1_g000002
rosa_roxburghii	Rroxscaffold_4G00324320
rosa_rugosa	Rorug01G0054700 Rorug01G0054800 Rorug01G0054900
rosa_samantha	Rh1AG071200 Rh1BG058200 Rh1CG070700 Rh1DG075400
rosa_wichuraiana	Rw1G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	533
AcsI	RAATTY	1 cut(s)	94
AdeI	CACNNNGTG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	3 cut(s)	166, 276, 309
AjuI	GAANNNNNNNTTGG	2 cut(s)	397, 429
AluBI	AGCT	5 cut(s)	221, 248, 265, 344, 376
AluI	AGCT	5 cut(s)	221, 248, 265, 344, 376
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	5 cut(s)	48, 169, 386, 432, 468
ApeKI	GCWGC	2 cut(s)	221, 344
ApoI	RAATTY	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	164, 387
AsuC2I	CCSGG	2 cut(s)	70, 326
AsuHPI	GGTGA	2 cut(s)	122, 147
AvaII	GGWCC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	208, 331
BccI	CCATC	1 cut(s)	473
BciT130I	CCWGG	3 cut(s)	168, 278, 311
BcnI	CCSGG	2 cut(s)	70, 326
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	159, 544
BfmI	CTRYAG	2 cut(s)	222, 423
BisI	GCNGC	2 cut(s)	222, 345
BlsI	GCNGC	2 cut(s)	223, 346
Bme1390I	CCNGG	5 cut(s)	70, 168, 278, 311, 326
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	164, 387
BmrFI	CCNGG	5 cut(s)	70, 168, 278, 311, 326
BmsI	GCATC	2 cut(s)	40, 103
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	70, 326
BsaJI	CCNNGG	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	2 cut(s)	50, 447
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	529
BseBI	CCWGG	3 cut(s)	168, 278, 311
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	3 cut(s)	319, 465, 484
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	2 cut(s)	273, 386
BseXI	GCAGC	2 cut(s)	208, 331
BseYI	CCCAGC	1 cut(s)	192
BshFI	GGCC	5 cut(s)	50, 171, 388, 434, 470
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	4 cut(s)	51, 69, 326, 448
BsiWI	CGTACG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	5 cut(s)	50, 171, 388, 434, 470
Bsp1286I	GDGCHC	1 cut(s)	401
BspANI	GGCC	5 cut(s)	50, 171, 388, 434, 470
BspCNI	CTCAG	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	529
BsrFI	RCCGGY	2 cut(s)	50, 447
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	2 cut(s)	50, 447
BssECI	CCNNGG	1 cut(s)	277
Bst2UI	CCWGG	3 cut(s)	168, 278, 311
Bst4CI	ACNGT	2 cut(s)	211, 424
BstC8I	GCNNGC	4 cut(s)	449, 453, 498, 520
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	319, 465, 484
BstMAI	GTCTC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	3 cut(s)	168, 278, 311
BstNSI	RCATGY	2 cut(s)	455, 500
BstSCI	CCNGG	5 cut(s)	68, 166, 276, 309, 324
BstSFI	CTRYAG	2 cut(s)	222, 423
BstV1I	GCAGC	2 cut(s)	208, 331
BsuRI	GGCC	5 cut(s)	50, 171, 388, 434, 470
BtsCI	GGATG	3 cut(s)	319, 465, 484
Cac8I	GCNNGC	4 cut(s)	449, 453, 498, 520
Cfr10I	RCCGGY	2 cut(s)	50, 447
Cfr13I	GGNCC	2 cut(s)	164, 387
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	4 cut(s)	384, 452, 456, 497
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	123
DraIII	CACNNNGTG	1 cut(s)	161
Eco147I	AGGCCT	3 cut(s)	171, 434, 470
Eco47I	GGWCC	1 cut(s)	164
EcoRII	CCWGG	3 cut(s)	166, 276, 309
EcoT22I	ATGCAT	1 cut(s)	457
FaeI	CATG	4 cut(s)	387, 455, 459, 500
FaiI	YATR	7 cut(s)	146, 337, 350, 385, 453, 457, 498
FatI	CATG	4 cut(s)	383, 451, 455, 496
Fnu4HI	GCNGC	2 cut(s)	222, 345
FokI	GGATG	3 cut(s)	326, 472, 491
Fsp4HI	GCNGC	2 cut(s)	222, 345
FspBI	CTAG	2 cut(s)	159, 544
GluI	GCNGC	2 cut(s)	222, 345
GsaI	CCCAGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	50, 171, 388, 434, 470
HapII	CCGG	4 cut(s)	51, 69, 326, 448
Hin1II	CATG	4 cut(s)	387, 455, 459, 500
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	4 cut(s)	51, 69, 326, 448
HphI	GGTGA	2 cut(s)	122, 147
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	100, 124
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	2 cut(s)	211, 424
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	5 cut(s)	224, 455, 475, 500, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	4 cut(s)	387, 455, 459, 500
KroI	GCCGGC	1 cut(s)	447
KroNI	GCCGGC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	2 cut(s)	208, 331
LweI	GCATC	2 cut(s)	40, 103
MaeI	CTAG	2 cut(s)	159, 544
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	1 cut(s)	529
MboII	GAAGA	2 cut(s)	139, 254
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	2 cut(s)	94, 118
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	9 cut(s)	40, 130, 182, 208, 226, 251, 364, 424, 460
Mph1103I	ATGCAT	1 cut(s)	457
MroNI	GCCGGC	1 cut(s)	447
MseI	TTAA	2 cut(s)	150, 294
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	4 cut(s)	51, 69, 326, 448
MspR9I	CCNGG	5 cut(s)	70, 168, 278, 311, 326
MvaI	CCWGG	3 cut(s)	168, 278, 311
MwoI	GCNNNNNNNGC	1 cut(s)	353
NaeI	GCCGGC	1 cut(s)	449
NciI	CCSGG	2 cut(s)	70, 326
NgoMIV	GCCGGC	1 cut(s)	447
NlaIII	CATG	4 cut(s)	387, 455, 459, 500
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	2 cut(s)	455, 500
PaeI	GCATGC	2 cut(s)	455, 500
PceI	AGGCCT	3 cut(s)	171, 434, 470
PdiI	GCCGGC	1 cut(s)	449
Pfl23II	CGTACG	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	223, 346
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Psp1406I	AACGTT	1 cut(s)	533
Psp6I	CCWGG	3 cut(s)	166, 276, 309
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	3 cut(s)	166, 276, 309
PspLI	CGTACG	1 cut(s)	20
PspPI	GGNCC	2 cut(s)	164, 387
PstI	CTGCAG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	150, 294
SatI	GCNGC	2 cut(s)	222, 345
Sau96I	GGNCC	2 cut(s)	164, 387
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	5 cut(s)	70, 168, 278, 311, 326
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	9 cut(s)	141, 160, 223, 250, 267, 334, 346, 378, 536
SfaNI	GCATC	2 cut(s)	40, 103
SfcI	CTRYAG	2 cut(s)	222, 423
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	2 cut(s)	455, 500
Sse9I	AATT	2 cut(s)	94, 118
SseBI	AGGCCT	3 cut(s)	171, 434, 470
SspMI	CTAG	2 cut(s)	159, 544
StuI	AGGCCT	3 cut(s)	171, 434, 470
StyD4I	CCNGG	5 cut(s)	68, 166, 276, 309, 324
TaaI	ACNGT	2 cut(s)	211, 424
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	1 cut(s)	256
TasI	AATT	2 cut(s)	94, 118
Tru1I	TTAA	2 cut(s)	150, 294
Tru9I	TTAA	2 cut(s)	150, 294
TseI	GCWGC	2 cut(s)	221, 344
TspDTI	ATGAA	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	2 cut(s)	455, 500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	189
XspI	CTAG	2 cut(s)	159, 544
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.