Rorug01G0054900

Nudix hydrolase 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006776
Physical Location & Seq
Reverse (-)
9032626 .. 9034879
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0054900.1

Sequence Viewer

Length: 1434 bp
ATGGAGTGGTGGTTCTTCACCAGAAAGTATTACAAGTACAACAAAAGCTCTCGCTCGAATCGGAGCACGAAGAAGGGATACTGGAAAATCACAGGCAAGGAGCGTGGGATTAAGGCTCGACGATCCAAAGCTGAAATTGGGAACAAGAGGACATTGACTTTTTACCAGGATCGTGTGCCGAAATCGAACATGACCAGCTGGGTCATTCTTGAGTACTATCTTCCTGGAAATGTTGTTATTTCGTATCCGAAGCAGGCCCAGGGCGACTTTGTTGTCTGTCGCTTGAAGATTAAATCAGATGTGAAGGATTCTTCGGTCGGTAATGAAGGAGAACCCGGTAGCGCTGGTGTGTCGAATTGCAAAAATCAAGCTGCTGATGAAATGAATCAAGAGGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCTGGATGACTGCTGCCCCTCAGCACTGCGGTCACCGGCATCTCAAGAGCTGGAAGCTGTTCTGCAAACCAATAGCACTAATGATGATTGTATTAAGTTGCAATCACCATTTGGAGATGGTGGTTCTTGTCTTCTAGACGGGAATGAAGTTTCAACCTGTGATGAAGATGAGACGGTGTGTGATGTGTTTCCACAGCTATGTGATCCGCCAGAAGAAAATCTGGACTCACTCTTACGTCCACCTCAGCCACAAGATCACCGCCCATCCATACTGCAGTCACCAATATACACAAGGCTGGGAAATGATCCACATCCGCTTCAGCCGCAGGATTACCAGCCCTCAATATTGCAGTCACCAATATACACAAAGTTGGGAAATGTTTCAGATTCCAATCTCTATTTTGGTGAATGCAATAATTGGCAATGTGCATTTAAGAAAAAAGTTTCAACCAATGAAGTTGACATACCAGTTAGACATATCTTGTCTAATTTTGAAAATCAAGCTACAGATTATAGGATTCTAAAGGTGCATCATCCTCAATCCAAAGAAAATCTGGAACCAGTGGTTTATTCATTCCAGCCACAAGATTGTACTGTGCAATCAATGATGTACACAATATATGGAGATGCTTTACATAATATTGAATGCAATTATTTGCAATCTTCGCTTGCGAACTATGACTCTTCTGTCACAAAGTTGTTGAATACAAGCACTGCTGACCAGGATTATTACTCTTCTGATCAAACAACACAGACTCCTTCCATAGACTCCAACCTGCCAACGTCACTGAGAAGGGTCTACCATGGGGATAGTGGACTAATGGATAGGCCTTTGAAGGAATTGAAGATGAAGCTTTTCAAATATGAGATATCAATGCTTGTACTAACCGCTCCCGGAGGAAGTGGGAAAACTACACTGGCAACAAAGTTTTGTCAAGATGGAGAAGTCAGAGATAAATTCAAGAACAATATCTTCTTTCTAACTGTTTCCAAGAGCCCAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

477

Amino Acids

53.98

Weight (kDa)

5.85

Isoelectric Point (pI)

61.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 2 - 73 3.6e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 272, 1115
Acc36I ACCTGC 1 cut(s) 1212
AccBSI CCGCTC 1 cut(s) 1319
AccI GTMKAC 1 cut(s) 1227
AciI CCGC 6 cut(s) 457, 635, 688, 743, 752, 1317
AclWI GGATC 4 cut(s) 117, 177, 626, 728
AcsI RAATTY 1 cut(s) 1385
AcuI CTGAAG 1 cut(s) 731
AfaI GTAC 5 cut(s) 38, 215, 1021, 1040, 1311
AfeI AGCGCT 1 cut(s) 343
AjnI CCWGG 4 cut(s) 165, 223, 258, 1149
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 9 cut(s) 48, 131, 198, 371, 478, 485, 625, 932, 1282
AluI AGCT 9 cut(s) 48, 131, 198, 371, 478, 485, 625, 932, 1282
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 4 cut(s) 117, 177, 626, 728
AlwNI CAGNNNCTG 1 cut(s) 430
Aor51HI AGCGCT 1 cut(s) 343
AoxI GGCC 2 cut(s) 255, 1256
ApeKI GCWGC 2 cut(s) 371, 441
ApoI RAATTY 1 cut(s) 1385
Asp700I GAANNNNTTC 3 cut(s) 486, 808, 1283
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 2 cut(s) 336, 1323
AsuHPI GGTGA 7 cut(s) 10, 453, 525, 677, 699, 774, 845
BanII GRGCYC 1 cut(s) 1427
BarI GAAGNNNNNNTAC 4 cut(s) 62, 94, 876, 908
BbsI GAAGAC 1 cut(s) 551
Bbv12I GWGCWC 1 cut(s) 68
BbvCI CCTCAGC 3 cut(s) 423, 448, 672
BbvI GCAGC 2 cut(s) 358, 428
BccI CCATC 4 cut(s) 423, 539, 700, 1361
BciT130I CCWGG 4 cut(s) 167, 225, 260, 1151
BciVI GTATCC 2 cut(s) 71, 255
BclI TGATCA 1 cut(s) 1168
BcnI CCSGG 2 cut(s) 336, 1323
BcoDI GTCTC 1 cut(s) 593
BfaI CTAG 1 cut(s) 563
BfmI CTRYAG 2 cut(s) 701, 933
BfoI RGCGCY 1 cut(s) 345
BfuAI ACCTGC 1 cut(s) 1212
BfuI GTATCC 2 cut(s) 71, 255
BisI GCNGC 3 cut(s) 372, 442, 752
BlsI GCNGC 3 cut(s) 373, 443, 753
BmcAI AGTACT 1 cut(s) 215
Bme1390I CCNGG 6 cut(s) 167, 225, 260, 336, 1151, 1323
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 987
BmrFI CCNGG 6 cut(s) 167, 225, 260, 336, 1151, 1323
BmsI GCATC 3 cut(s) 476, 967, 1045
BpiI GAAGAC 1 cut(s) 551
Bpu10I CCTNAGC 3 cut(s) 423, 448, 672
BpuEI CTTGAG 2 cut(s) 230, 456
BpuMI CCSGG 2 cut(s) 336, 1323
BsaBI GATNNNNATC 2 cut(s) 738, 819
BsaJI CCNNGG 3 cut(s) 258, 259, 1231
BsaXI ACNNNNNCTCC 3 cut(s) 26, 1168, 1198
Bse118I RCCGGY 1 cut(s) 463
Bse1I ACTGG 4 cut(s) 86, 896, 989, 1350
Bse3DI GCAATG 1 cut(s) 857
Bse8I GATNNNNATC 2 cut(s) 738, 819
BseBI CCWGG 4 cut(s) 167, 225, 260, 1151
BseDI CCNNGG 3 cut(s) 258, 259, 1231
BseGI GGATG 4 cut(s) 439, 692, 739, 961
BseJI GATNNNNATC 2 cut(s) 738, 819
BseMI GCAATG 1 cut(s) 857
BseMII CTCAG 4 cut(s) 437, 462, 686, 1208
BseNI ACTGG 4 cut(s) 86, 896, 989, 1350
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 358, 428
BseYI CCCAGC 2 cut(s) 198, 724
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 2 cut(s) 257, 1258
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 3 cut(s) 336, 464, 1323
BsmAI GTCTC 1 cut(s) 593
BsmBI CGTCTC 1 cut(s) 593
BsmI GAATGC 2 cut(s) 842, 1079
BsnI GGCC 2 cut(s) 257, 1258
Bsp1286I GDGCHC 2 cut(s) 68, 1427
Bsp1407I TGTACA 1 cut(s) 1038
Bsp143I GATC 6 cut(s) 122, 169, 631, 682, 733, 1168
Bsp19I CCATGG 1 cut(s) 1231
BspACI CCGC 6 cut(s) 457, 635, 688, 743, 752, 1317
BspANI GGCC 2 cut(s) 257, 1258
BspCNI CTCAG 4 cut(s) 436, 461, 685, 1209
BspLI GGNNCC 1 cut(s) 987
BspMAI CTGCAG 1 cut(s) 705
BspMI ACCTGC 1 cut(s) 1212
BspPI GGATC 4 cut(s) 117, 177, 626, 728
BsrBI CCGCTC 1 cut(s) 1319
BsrDI GCAATG 1 cut(s) 857
BsrFI RCCGGY 1 cut(s) 463
BsrGI TGTACA 1 cut(s) 1038
BsrI ACTGG 4 cut(s) 86, 896, 989, 1350
BssAI RCCGGY 1 cut(s) 463
BssECI CCNNGG 3 cut(s) 258, 259, 1231
BssMI GATC 6 cut(s) 122, 169, 631, 682, 733, 1168
BssT1I CCWWGG 1 cut(s) 1231
Bst2UI CCWGG 4 cut(s) 167, 225, 260, 1151
Bst4CI ACNGT 3 cut(s) 604, 1024, 1414
Bst6I CTCTTC 3 cut(s) 391, 1117, 1168
BstAUI TGTACA 1 cut(s) 1038
BstC8I GCNNGC 2 cut(s) 255, 1098
BstDEI CTNAG 5 cut(s) 423, 448, 672, 1217, 1431
BstDSI CCRYGG 1 cut(s) 1231
BstEII GGTNACC 1 cut(s) 459
BstF5I GGATG 4 cut(s) 439, 692, 739, 961
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 6 cut(s) 125, 172, 634, 685, 736, 1171
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 6 cut(s) 122, 169, 631, 682, 733, 1168
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 751, 1093
BstNI CCWGG 4 cut(s) 167, 225, 260, 1151
BstPI GGTNACC 1 cut(s) 459
BstSCI CCNGG 6 cut(s) 165, 223, 258, 334, 1149, 1321
BstSFI CTRYAG 2 cut(s) 701, 933
BstV1I GCAGC 2 cut(s) 358, 428
BstV2I GAAGAC 1 cut(s) 551
BsuI GTATCC 2 cut(s) 71, 255
BsuRI GGCC 2 cut(s) 257, 1258
BtgI CCRYGG 1 cut(s) 1231
BtsCI GGATG 4 cut(s) 439, 692, 739, 961
BtsI GCAGTG 2 cut(s) 452, 1140
BtsIMutI CAGTG 5 cut(s) 452, 996, 1140, 1214, 1343
BveI ACCTGC 1 cut(s) 1212
Cac8I GCNNGC 2 cut(s) 255, 1098
CaiI CAGNNNCTG 1 cut(s) 430
CfoI GCGC 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 5 cut(s) 37, 214, 1020, 1039, 1310
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 2 cut(s) 190, 1232
CviQI GTAC 5 cut(s) 37, 214, 1020, 1039, 1310
DdeI CTNAG 5 cut(s) 423, 448, 672, 1217, 1431
DpnI GATC 6 cut(s) 124, 171, 633, 684, 735, 1170
DpnII GATC 6 cut(s) 122, 169, 631, 682, 733, 1168
DrdI GACNNNNNNGTC 2 cut(s) 272, 1115
DseDI GACNNNNNNGTC 2 cut(s) 272, 1115
Eam1104I CTCTTC 3 cut(s) 391, 1117, 1168
EarI CTCTTC 3 cut(s) 391, 1117, 1168
EciI GGCGGA 1 cut(s) 624
Eco130I CCWWGG 1 cut(s) 1231
Eco147I AGGCCT 1 cut(s) 1258
Eco24I GRGCYC 1 cut(s) 1427
Eco32I GATATC 1 cut(s) 1299
Eco47III AGCGCT 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 731
Eco91I GGTNACC 1 cut(s) 459
EcoO65I GGTNACC 1 cut(s) 459
EcoRII CCWGG 4 cut(s) 165, 223, 258, 1149
EcoRV GATATC 1 cut(s) 1299
EcoT14I CCWWGG 1 cut(s) 1231
EcoT38I GRGCYC 1 cut(s) 1427
ErhI CCWWGG 1 cut(s) 1231
Esp3I CGTCTC 1 cut(s) 593
FaeI CATG 2 cut(s) 193, 1235
FatI CATG 2 cut(s) 189, 1231
FbaI TGATCA 1 cut(s) 1168
FblI GTMKAC 1 cut(s) 1227
Fnu4HI GCNGC 3 cut(s) 372, 442, 752
FokI GGATG 4 cut(s) 446, 679, 726, 948
FriOI GRGCYC 1 cut(s) 1427
Fsp4HI GCNGC 3 cut(s) 372, 442, 752
FspBI CTAG 1 cut(s) 563
GlaI GCGC 1 cut(s) 343
GluI GCNGC 3 cut(s) 372, 442, 752
GsaI CCCAGC 2 cut(s) 202, 728
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 2 cut(s) 257, 1258
HapII CCGG 3 cut(s) 336, 464, 1323
HhaI GCGC 1 cut(s) 344
Hin1II CATG 2 cut(s) 193, 1235
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HindIII AAGCTT 1 cut(s) 1280
HinfI GANTC 9 cut(s) 58, 308, 385, 653, 815, 946, 1109, 1183, 1196
HpaII CCGG 3 cut(s) 336, 464, 1323
HphI GGTGA 7 cut(s) 10, 453, 525, 677, 699, 774, 845
Hpy166II GTNNAC 5 cut(s) 668, 889, 1041, 1228, 1244
Hpy188I TCNGA 6 cut(s) 63, 249, 298, 814, 1168, 1379
Hpy188III TCNNGA 9 cut(s) 209, 389, 431, 473, 563, 650, 983, 1364, 1390
Hpy8I GTNNAC 5 cut(s) 668, 889, 1041, 1228, 1244
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 6 cut(s) 67, 298, 320, 1197, 1215, 1258
HpyCH4III ACNGT 3 cut(s) 604, 1024, 1414
HpyCH4IV ACGT 2 cut(s) 664, 1211
HpyF10VI GCNNNNNNNGC 2 cut(s) 751, 1093
HpyF3I CTNAG 5 cut(s) 423, 448, 672, 1217, 1431
HpySE526I ACGT 2 cut(s) 664, 1211
Hsp92II CATG 2 cut(s) 193, 1235
HspAI GCGC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 1168
Kzo9I GATC 6 cut(s) 122, 169, 631, 682, 733, 1168
LmnI GCTCC 3 cut(s) 63, 100, 1324
Lsp1109I GCAGC 2 cut(s) 358, 428
LweI GCATC 3 cut(s) 476, 967, 1045
MaeI CTAG 1 cut(s) 563
MaeII ACGT 2 cut(s) 664, 1211
MaeIII GTNAC 5 cut(s) 459, 705, 780, 1117, 1212
MalI GATC 6 cut(s) 124, 171, 633, 684, 735, 1170
MbiI CCGCTC 1 cut(s) 1319
MboI GATC 6 cut(s) 122, 169, 631, 682, 733, 1168
MhlI GDGCHC 2 cut(s) 68, 1427
MluCI AATT 7 cut(s) 135, 355, 844, 916, 1078, 1268, 1385
MlyI GAGTC 4 cut(s) 647, 1103, 1177, 1190
MmeI TCCRAC 1 cut(s) 1224
MroXI GAANNNNTTC 3 cut(s) 486, 808, 1283
MseI TTAA 4 cut(s) 111, 291, 522, 861
MslI CAYNNNNRTG 1 cut(s) 625
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 3 cut(s) 336, 464, 1323
MspR9I CCNGG 6 cut(s) 167, 225, 260, 336, 1151, 1323
Mva1269I GAATGC 2 cut(s) 842, 1079
MvaI CCWGG 4 cut(s) 167, 225, 260, 1151
MwoI GCNNNNNNNGC 2 cut(s) 751, 1093
NciI CCSGG 2 cut(s) 336, 1323
NcoI CCATGG 1 cut(s) 1231
NdeII GATC 6 cut(s) 122, 169, 631, 682, 733, 1168
NlaIII CATG 2 cut(s) 193, 1235
NlaIV GGNNCC 1 cut(s) 987
NmuCI GTSAC 5 cut(s) 459, 705, 780, 1117, 1212
PasI CCCWGGG 1 cut(s) 259
PceI AGGCCT 1 cut(s) 1258
PctI GAATGC 2 cut(s) 842, 1079
PdmI GAANNNNTTC 3 cut(s) 486, 808, 1283
PfeI GAWTC 5 cut(s) 58, 308, 385, 815, 946
PfoI TCCNGGA 2 cut(s) 223, 1321
PkrI GCNGC 3 cut(s) 373, 443, 753
PleI GAGTC 4 cut(s) 647, 1103, 1177, 1190
PpsI GAGTC 4 cut(s) 647, 1103, 1177, 1190
Psp6I CCWGG 4 cut(s) 165, 223, 258, 1149
PspEI GGTNACC 1 cut(s) 459
PspFI CCCAGC 2 cut(s) 198, 724
PspGI CCWGG 4 cut(s) 165, 223, 258, 1149
PspN4I GGNNCC 1 cut(s) 987
PspPI GGNCC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 705
PstNI CAGNNNCTG 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 198
RsaI GTAC 5 cut(s) 38, 215, 1021, 1040, 1311
RsaNI GTAC 5 cut(s) 37, 214, 1020, 1039, 1310
RseI CAYNNNNRTG 1 cut(s) 625
SaqAI TTAA 4 cut(s) 111, 291, 522, 861
SatI GCNGC 3 cut(s) 372, 442, 752
Sau3AI GATC 6 cut(s) 122, 169, 631, 682, 733, 1168
Sau96I GGNCC 1 cut(s) 256
ScaI AGTACT 1 cut(s) 215
SchI GAGTC 4 cut(s) 647, 1103, 1177, 1190
ScrFI CCNGG 6 cut(s) 167, 225, 260, 336, 1151, 1323
SduI GDGCHC 2 cut(s) 68, 1427
SfaNI GCATC 3 cut(s) 476, 967, 1045
SfcI CTRYAG 2 cut(s) 701, 933
SmiMI CAYNNNNRTG 1 cut(s) 625
SmlI CTYRAG 2 cut(s) 209, 471
SmoI CTYRAG 2 cut(s) 209, 471
Sse9I AATT 7 cut(s) 135, 355, 844, 916, 1078, 1268, 1385
SseBI AGGCCT 1 cut(s) 1258
SsiI CCGC 6 cut(s) 457, 635, 688, 743, 752, 1317
SspI AATATT 2 cut(s) 774, 1069
SspMI CTAG 1 cut(s) 563
StuI AGGCCT 1 cut(s) 1258
StyD4I CCNGG 6 cut(s) 165, 223, 258, 334, 1149, 1321
StyI CCWWGG 1 cut(s) 1231
TaaI ACNGT 3 cut(s) 604, 1024, 1414
TaiI ACGT 2 cut(s) 667, 1214
TaqI TCGA 4 cut(s) 56, 118, 185, 353
TaqII GACCGA 1 cut(s) 304
TasI AATT 7 cut(s) 135, 355, 844, 916, 1078, 1268, 1385
TatI WGTACW 5 cut(s) 36, 213, 1019, 1038, 1309
TauI GCSGC 1 cut(s) 754
TfiI GAWTC 5 cut(s) 58, 308, 385, 815, 946
Tru1I TTAA 4 cut(s) 111, 291, 522, 861
Tru9I TTAA 4 cut(s) 111, 291, 522, 861
TscAI CASTG 5 cut(s) 459, 996, 1147, 1221, 1350
TseFI GTSAC 5 cut(s) 459, 705, 780, 1117, 1212
TseI GCWGC 2 cut(s) 371, 441
Tsp45I GTSAC 5 cut(s) 459, 705, 780, 1117, 1212
TspDTI ATGAA 8 cut(s) 339, 393, 398, 588, 606, 897, 990, 1292
TspRI CASTG 5 cut(s) 459, 996, 1147, 1221, 1350
XapI RAATTY 1 cut(s) 1385
XbaI TCTAGA 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 2 cut(s) 979, 1238
XmiI GTMKAC 1 cut(s) 1227
XmnI GAANNNNTTC 3 cut(s) 486, 808, 1283
XspI CTAG 1 cut(s) 563
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.