Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012571.1

Orthogroup ID

OG0006776

Physical Location & Seq

Genomic Coordinates Reverse (-)

17881 .. 21858

Gene Structure 3978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012571.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgtgtgatatagtggcccgtacgggtcgacatcagcaacgctacgagggcgggtgtcgccttgttgccgggtgtattccattcaggtacagaaattctgatgagagtggcgatgctgattctgagaagattgttgaggtccttatgattaactcatccagtggaccaggtcttttatttcctaagggaggctgggagaatgatgaaactgtgcaggaagctgctgtaagagaagctattgaagaagctggggttcgaggagaactaatggatttagtggggtattaccaatttaagagtaaaactcaccaggatgagttaaacccagaaggtatatgtagagctgctatgtttgcattgttcgtcaaggaggagcttgagtcatggccagaacagagcactcgaaacagaacttggctgactgttcaagaggctactggtagatgccggcatgcatggatgagtgaggccctggtggagggtttctcaaagtggcatgcagaaaagatgataggtgcagggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

174

Amino Acids

19.56

Weight (kDa)

5.1

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12600 AT3G12600
fragaria_vesca	FvH4_7g03460 FvH4_7g03460
malus_domestica	MD02G1282400.v1.1 MD07G1048400.v1.1 MD14G1088400.v1.1
prunus_persica	Prupe.2G040100_v2.0.a1 Prupe.2G040100_v2.0.a1 Prupe.2G040100_v2.0.a1 Prupe.7G038300_v2.0.a1
pyrus_communis	pycom02g24100 pycom14g07850
rosa_chinensis	RchiOBHm_Chr1g0325791
rosa_laevigata	RLG00000030104
rosa_multiflora	Rmu_sc0012571.1_g000002 Rmu_sc0021974.1_g000002
rosa_roxburghii	Rroxscaffold_4G00324320
rosa_rugosa	Rorug01G0054700 Rorug01G0054800 Rorug01G0054900
rosa_samantha	Rh1AG071200 Rh1BG058200 Rh1CG070700 Rh1DG075400
rosa_wichuraiana	Rw1G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	1 cut(s)	51
AcoI	YGGCCR	1 cut(s)	386
AcsI	RAATTY	1 cut(s)	94
AfaI	GTAC	2 cut(s)	22, 89
AfiI	CCNNNNNNNGG	2 cut(s)	188, 478
AgsI	TTSAA	2 cut(s)	242, 428
AjnI	CCWGG	3 cut(s)	166, 309, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	397, 429
AluBI	AGCT	5 cut(s)	221, 236, 248, 344, 376
AluI	AGCT	5 cut(s)	221, 236, 248, 344, 376
Alw21I	GWGCWC	1 cut(s)	401
AoxI	GGCC	3 cut(s)	15, 386, 468
ApeKI	GCWGC	2 cut(s)	221, 344
ApoI	RAATTY	1 cut(s)	94
AspS9I	GGNCC	4 cut(s)	16, 139, 164, 469
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	139, 164
AxyI	CCTNAGG	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	208, 331
BciT130I	CCWGG	3 cut(s)	168, 311, 473
BcnI	CCSGG	1 cut(s)	70
BisI	GCNGC	2 cut(s)	222, 345
BlsI	GCNGC	2 cut(s)	223, 346
Bme1390I	CCNGG	4 cut(s)	70, 168, 311, 473
Bme18I	GGWCC	2 cut(s)	139, 164
BmgT120I	GGNCC	4 cut(s)	16, 139, 164, 469
BmrFI	CCNGG	4 cut(s)	70, 168, 311, 473
BmsI	GCATC	2 cut(s)	103, 434
BplI	GAGNNNNNCTC	4 cut(s)	289, 321, 470, 502
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	471
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 478
Bse118I	RCCGGY	1 cut(s)	447
Bse1I	ACTGG	2 cut(s)	159, 442
Bse21I	CCTNAGG	1 cut(s)	183
BseBI	CCWGG	3 cut(s)	168, 311, 473
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	3 cut(s)	155, 319, 465
BseLI	CCNNNNNNNGG	2 cut(s)	188, 478
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	159, 442
BseRI	GAGGAG	2 cut(s)	273, 386
BseXI	GCAGC	2 cut(s)	208, 331
BseYI	CCCAGC	2 cut(s)	192, 248
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	17, 388, 470
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	2 cut(s)	69, 448
BsiWI	CGTACG	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	188, 478
BsnI	GGCC	3 cut(s)	17, 388, 470
Bsp1286I	GDGCHC	1 cut(s)	401
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	3 cut(s)	17, 388, 470
BspCNI	CTCAG	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	159, 442
BssAI	RCCGGY	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	471
Bst2UI	CCWGG	3 cut(s)	168, 311, 473
Bst4CI	ACNGT	2 cut(s)	211, 424
BstC8I	GCNNGC	3 cut(s)	449, 453, 498
BstDEI	CTNAG	2 cut(s)	123, 183
BstENI	CCTNNNNNAGG	2 cut(s)	186, 476
BstF5I	GGATG	3 cut(s)	155, 319, 465
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 57, 353
BstNI	CCWGG	3 cut(s)	168, 311, 473
BstNSI	RCATGY	2 cut(s)	455, 500
BstSCI	CCNGG	4 cut(s)	68, 166, 309, 471
BstV1I	GCAGC	2 cut(s)	208, 331
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	17, 388, 470
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	155, 319, 465
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	3 cut(s)	449, 453, 498
Cfr10I	RCCGGY	1 cut(s)	447
Cfr13I	GGNCC	4 cut(s)	16, 139, 164, 469
CsiI	ACCWGGT	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	21, 88
CviAII	CATG	4 cut(s)	384, 452, 456, 497
CviQI	GTAC	2 cut(s)	21, 88
DdeI	CTNAG	2 cut(s)	123, 183
EaeI	YGGCCR	1 cut(s)	386
Eco47I	GGWCC	2 cut(s)	139, 164
Eco81I	CCTNAGG	1 cut(s)	183
EcoNI	CCTNNNNNAGG	2 cut(s)	186, 476
EcoO109I	RGGNCCY	2 cut(s)	139, 469
EcoRII	CCWGG	3 cut(s)	166, 309, 471
EcoT22I	ATGCAT	1 cut(s)	457
FaeI	CATG	4 cut(s)	387, 455, 459, 500
FaiI	YATR	9 cut(s)	11, 146, 335, 337, 350, 385, 453, 457, 498
FatI	CATG	4 cut(s)	383, 451, 455, 496
FauI	CCCGC	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	222, 345
FokI	GGATG	3 cut(s)	142, 326, 472
Fsp4HI	GCNGC	2 cut(s)	222, 345
GluI	GCNGC	2 cut(s)	222, 345
GsaI	CCCAGC	2 cut(s)	196, 252
HaeIII	GGCC	3 cut(s)	17, 388, 470
HapII	CCGG	2 cut(s)	69, 448
Hin1II	CATG	4 cut(s)	387, 455, 459, 500
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	2 cut(s)	119, 380
HpaII	CCGG	2 cut(s)	69, 448
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	29, 164
Hpy188I	TCNGA	2 cut(s)	100, 124
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	2 cut(s)	29, 164
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	2 cut(s)	211, 424
HpyCH4V	TGCA	5 cut(s)	214, 356, 455, 500, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 57, 353
HpyF3I	CTNAG	2 cut(s)	123, 183
Hsp92II	CATG	4 cut(s)	387, 455, 459, 500
KroI	GCCGGC	1 cut(s)	447
KroNI	GCCGGC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	2 cut(s)	208, 331
LweI	GCATC	2 cut(s)	103, 434
MabI	ACCWGGT	1 cut(s)	166
MboII	GAAGA	2 cut(s)	139, 254
MhlI	GDGCHC	1 cut(s)	401
MlsI	TGGCCA	1 cut(s)	388
MluCI	AATT	2 cut(s)	94, 290
MluNI	TGGCCA	1 cut(s)	388
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	8 cut(s)	40, 130, 182, 251, 364, 424, 460, 472
Mox20I	TGGCCA	1 cut(s)	388
Mph1103I	ATGCAT	1 cut(s)	457
MroNI	GCCGGC	1 cut(s)	447
MscI	TGGCCA	1 cut(s)	388
MseI	TTAA	3 cut(s)	150, 294, 320
MslI	CAYNNNNRTG	1 cut(s)	312
Msp20I	TGGCCA	1 cut(s)	388
MspI	CCGG	2 cut(s)	69, 448
MspR9I	CCNGG	4 cut(s)	70, 168, 311, 473
MvaI	CCWGG	3 cut(s)	168, 311, 473
MwoI	GCNNNNNNNGC	3 cut(s)	48, 57, 353
NaeI	GCCGGC	1 cut(s)	449
NciI	CCSGG	1 cut(s)	70
NgoMIV	GCCGGC	1 cut(s)	447
NlaIII	CATG	4 cut(s)	387, 455, 459, 500
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	2 cut(s)	455, 500
PaeI	GCATGC	2 cut(s)	455, 500
PdiI	GCCGGC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	119
Pfl23II	CGTACG	1 cut(s)	20
PflFI	GACNNNGTC	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	223, 346
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	3 cut(s)	166, 309, 471
PspFI	CCCAGC	2 cut(s)	192, 248
PspGI	CCWGG	3 cut(s)	166, 309, 471
PspLI	CGTACG	1 cut(s)	20
PspPI	GGNCC	4 cut(s)	16, 139, 164, 469
PspPPI	RGGWCCY	1 cut(s)	139
PsyI	GACNNNGTC	1 cut(s)	168
RsaI	GTAC	2 cut(s)	22, 89
RsaNI	GTAC	2 cut(s)	21, 88
RseI	CAYNNNNRTG	1 cut(s)	312
SalI	GTCGAC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	150, 294, 320
SatI	GCNGC	2 cut(s)	222, 345
Sau96I	GGNCC	4 cut(s)	16, 139, 164, 469
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	4 cut(s)	70, 168, 311, 473
SduI	GDGCHC	1 cut(s)	401
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	103, 434
SinI	GGWCC	2 cut(s)	139, 164
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	2 cut(s)	455, 500
Sse9I	AATT	2 cut(s)	94, 290
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	68, 166, 309, 471
TaaI	ACNGT	2 cut(s)	211, 424
TaqI	TCGA	3 cut(s)	28, 256, 403
TasI	AATT	2 cut(s)	94, 290
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	150, 294, 320
Tru9I	TTAA	3 cut(s)	150, 294, 320
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	2 cut(s)	221, 344
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	139, 164
XagI	CCTNNNNNAGG	2 cut(s)	186, 476
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	2 cut(s)	455, 500
XmiI	GTMKAC	1 cut(s)	28
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.