Prupe.7G038300_v2.0.a1

Nudix hydrolase 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0006776
Physical Location & Seq
Reverse (-)
7119836 .. 7125280
5445 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G038300.1

Sequence Viewer

Length: 684 bp
ATGTCAGCCTTGGTGGCTCGCACTGGCCGCCATCAGCAGCGGTACGAGGGCGGTCACCGCCTCGTTTCGGGGTGTATTCCCTTCAAGTATACAAATCTTGTTGAAAATAGTGATGGGACACATGAGAAGGTTGTCGAAGTTCTAATGATCAACTCAACTAGTGGACCTGGGCTTGTCTTTCCGAAGGGTGGATGGGAAAATGATGAAACCGTTGAGGAAGCAGCAATACGTGAAGCTGTAGAAGAAGCTGGAGTACGAGGAGATATAATGGATTTTTTGGGGCACTACTTTTTTAAAAGCAAGACTCTGCAAGACGAGTTGAGTCCTGAAGGTTTGTGCAAAGCTGCCGTGTTCCCTTTGCTTGTGAAGGAAGAGCTCCAGTTTTGGCCAGAACAGAATACTCGTCAAAGAAGTTGGCTTACTATTCCTGAAGCTATAGGACTTTGCAGGCATCAATGGATGAAAGAGGCTCTTGAGGCCTTCTCAAGGTGGTATGCAGATCAGATGCTGAGCAACCCAAAGAAAGAGAACCATTGCCTTTTCCTTTCCGTTTTCAGGGTTCAGGCATACCCCGAGGCTTTGACGGCCACCTTAGAGAAACATGTCGGAGGAGCTAATACAAGCTCGACTAGCAAATGTACCTGTCCTACTAACATGCTAAAAAAGAGATTGGAAACCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

228

Amino Acids

25.61

Weight (kDa)

6.19

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 89
AciI CCGC 4 cut(s) 28, 40, 51, 58
AcoI YGGCCR 3 cut(s) 25, 386, 585
AcuI CTGAAG 2 cut(s) 348, 450
AfaI GTAC 3 cut(s) 44, 255, 640
AfiI CCNNNNNNNGG 4 cut(s) 67, 188, 486, 555
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 2 cut(s) 85, 104
AhlI ACTAGT 1 cut(s) 158
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 8 cut(s) 236, 248, 344, 376, 434, 614, 624, 681
AluI AGCT 8 cut(s) 236, 248, 344, 376, 434, 614, 624, 681
Alw21I GWGCWC 1 cut(s) 378
AlwNI CAGNNNCTG 1 cut(s) 508
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 4 cut(s) 25, 386, 477, 585
ApeKI GCWGC 3 cut(s) 37, 221, 344
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 285
BalI TGGCCA 1 cut(s) 388
BanII GRGCYC 1 cut(s) 378
BarI GAAGNNNNNNTAC 6 cut(s) 210, 237, 242, 269, 403, 435
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 49, 233, 331
BccI CCATC 3 cut(s) 39, 107, 186
BceAI ACGGC 2 cut(s) 332, 600
BciT130I CCWGG 1 cut(s) 168
BclI TGATCA 1 cut(s) 147
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 3 cut(s) 159, 630, 682
BfmI CTRYAG 2 cut(s) 237, 435
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 4 cut(s) 28, 38, 222, 345
BlpI GCTNAGC 1 cut(s) 509
BlsI GCNGC 4 cut(s) 29, 39, 223, 346
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 460, 495
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BpmI CTGGAG 2 cut(s) 270, 362
Bpu1102I GCTNAGC 1 cut(s) 509
BpuEI CTTGAG 2 cut(s) 469, 494
BsaAI YACGTR 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 9, 167, 573
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 188, 486, 555
Bse1I ACTGG 2 cut(s) 28, 379
Bse3DI GCAATG 1 cut(s) 532
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 9, 167, 573
BseGI GGATG 2 cut(s) 197, 465
BseLI CCNNNNNNNGG 4 cut(s) 67, 188, 486, 555
BseMI GCAATG 1 cut(s) 532
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 2 cut(s) 28, 379
BseRI GAGGAG 2 cut(s) 273, 624
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 3 cut(s) 49, 233, 331
BshFI GGCC 4 cut(s) 27, 388, 479, 587
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 572
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 4 cut(s) 67, 188, 486, 555
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 4 cut(s) 27, 388, 479, 587
BsoBI CYCGRG 1 cut(s) 572
Bsp1286I GDGCHC 2 cut(s) 285, 378
Bsp143I GATC 2 cut(s) 147, 499
Bsp1720I GCTNAGC 1 cut(s) 509
BspACI CCGC 4 cut(s) 28, 40, 51, 58
BspANI GGCC 4 cut(s) 27, 388, 479, 587
BspCNI CTCAG 1 cut(s) 501
BspQI GCTCTTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 532
BsrI ACTGG 2 cut(s) 28, 379
BssECI CCNNGG 3 cut(s) 9, 167, 573
BssMI GATC 2 cut(s) 147, 499
BssNAI GTATAC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 9
Bst1107I GTATAC 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 19, 449
BstDEI CTNAG 2 cut(s) 509, 592
BstEII GGTNACC 1 cut(s) 53
BstENI CCTNNNNNAGG 1 cut(s) 484
BstF5I GGATG 2 cut(s) 197, 465
BstKTI GATC 2 cut(s) 150, 502
BstMBI GATC 2 cut(s) 147, 499
BstMWI GCNNNNNNNGC 6 cut(s) 14, 27, 57, 476, 584, 630
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 2 cut(s) 605, 658
BstPI GGTNACC 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 2 cut(s) 237, 435
BstSLI GKGCMC 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 49, 233, 331
BstZ17I GTATAC 1 cut(s) 90
BsuRI GGCC 4 cut(s) 27, 388, 479, 587
BtsCI GGATG 2 cut(s) 197, 465
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 2 cut(s) 19, 449
CaiI CAGNNNCTG 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 3 cut(s) 43, 254, 639
CviAII CATG 3 cut(s) 122, 602, 655
CviQI GTAC 3 cut(s) 43, 254, 639
DdeI CTNAG 2 cut(s) 509, 592
DpnI GATC 2 cut(s) 149, 501
DpnII GATC 2 cut(s) 147, 499
DraI TTTAAA 1 cut(s) 295
EaeI YGGCCR 3 cut(s) 25, 386, 585
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 9
Eco147I AGGCCT 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 348, 450
Eco88I CYCGRG 1 cut(s) 572
Eco91I GGTNACC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 376
EcoNI CCTNNNNNAGG 1 cut(s) 484
EcoO65I GGTNACC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 3 cut(s) 125, 605, 658
FaiI YATR 8 cut(s) 90, 123, 266, 437, 495, 568, 603, 656
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 1 cut(s) 130
FatI CATG 3 cut(s) 121, 601, 654
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 4 cut(s) 28, 38, 222, 345
FokI GGATG 2 cut(s) 204, 472
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 4 cut(s) 28, 38, 222, 345
FspBI CTAG 3 cut(s) 159, 630, 682
GluI GCNGC 4 cut(s) 28, 38, 222, 345
GsuI CTGGAG 2 cut(s) 270, 362
HaeIII GGCC 4 cut(s) 27, 388, 479, 587
Hin1II CATG 3 cut(s) 125, 605, 658
HinfI GANTC 2 cut(s) 304, 322
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 90, 164
Hpy188I TCNGA 3 cut(s) 183, 504, 608
Hpy188III TCNNGA 3 cut(s) 326, 428, 473
Hpy8I GTNNAC 2 cut(s) 90, 164
HpyAV CCTTC 6 cut(s) 91, 121, 178, 323, 361, 490
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 310, 339, 447, 497
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 27, 57, 476, 584, 630
HpyF3I CTNAG 2 cut(s) 509, 592
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 3 cut(s) 125, 605, 658
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 2 cut(s) 147, 499
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 2 cut(s) 381, 611
Lsp1109I GCAGC 3 cut(s) 49, 233, 331
LweI GCATC 2 cut(s) 460, 495
MaeI CTAG 3 cut(s) 159, 630, 682
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 53
MalI GATC 2 cut(s) 149, 501
MboI GATC 2 cut(s) 147, 499
MboII GAAGA 2 cut(s) 254, 383
MhlI GDGCHC 2 cut(s) 285, 378
MlsI TGGCCA 1 cut(s) 388
MluNI TGGCCA 1 cut(s) 388
MlyI GAGTC 2 cut(s) 298, 331
MmeI TCCRAC 1 cut(s) 586
MnlI CCTC 8 cut(s) 40, 71, 208, 251, 460, 469, 568, 602
Mox20I TGGCCA 1 cut(s) 388
MscI TGGCCA 1 cut(s) 388
MseI TTAA 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 388
MspA1I CMGCKG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 6 cut(s) 14, 27, 57, 476, 584, 630
NdeII GATC 2 cut(s) 147, 499
NlaIII CATG 3 cut(s) 125, 605, 658
NmuCI GTSAC 1 cut(s) 53
NspI RCATGY 2 cut(s) 605, 658
PceI AGGCCT 1 cut(s) 479
PciI ACATGT 1 cut(s) 601
PciSI GCTCTTC 1 cut(s) 366
PkrI GCNGC 4 cut(s) 29, 39, 223, 346
PleI GAGTC 2 cut(s) 298, 330
PpsI GAGTC 2 cut(s) 298, 330
Ppu21I YACGTR 1 cut(s) 230
PscI ACATGT 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 166
PspEI GGTNACC 1 cut(s) 53
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 1 cut(s) 164
PstNI CAGNNNCTG 1 cut(s) 508
RsaI GTAC 3 cut(s) 44, 255, 640
RsaNI GTAC 3 cut(s) 43, 254, 639
SacI GAGCTC 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 4 cut(s) 28, 38, 222, 345
Sau3AI GATC 2 cut(s) 147, 499
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 2 cut(s) 298, 331
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 285, 378
SfaNI GCATC 2 cut(s) 460, 495
SfcI CTRYAG 2 cut(s) 237, 435
SinI GGWCC 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 473, 484
SmoI CTYRAG 2 cut(s) 473, 484
SpeI ACTAGT 1 cut(s) 158
SseBI AGGCCT 1 cut(s) 479
SsiI CCGC 4 cut(s) 28, 40, 51, 58
SspMI CTAG 3 cut(s) 159, 630, 682
SstI GAGCTC 1 cut(s) 378
StuI AGGCCT 1 cut(s) 479
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 1 cut(s) 232
TaqI TCGA 2 cut(s) 135, 626
TauI GCSGC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 3 cut(s) 37, 221, 344
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 219, 476
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 484
XceI RCATGY 2 cut(s) 605, 658
XmiI GTMKAC 1 cut(s) 89
XspI CTAG 3 cut(s) 159, 630, 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.