Rh1CG070700

Nudix hydrolase 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006776
Physical Location & Seq
Forward (+)
14620276 .. 14625266
4991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG070700.1

Sequence Viewer

Length: 381 bp
ATGATTAACTCATCCAGTGGACCAGGTCTTTTATTTCCTAAGGGAGGCTGGGAGAATGATGAAACTGTGCAGGAAGCTGCCGTAAGAGAAGCTATTGAAGAAGCTGGGGTTCGAGGAGAACTAATGGATTTAGTGGGGTATTACCAATTTAAGAGTAAAACTCACCAGGATGAGTTAAACCCAGAAGGTATATGTAGAGCTGCTATGTTTGCATTGTTCGTCAAGGAGGAGCTTGAGTCATGGCCAGAACAGAGCACTCGAAACAGAACTTGGCTGACTGTTCAAGAGGCTACTGGTAGATGCCGGCATGCATGGATGAGTGAGGCCCTGGTGGAGGGGTTCTCAAAGTGGCATGCAGAAAAGATGATAGGTGCAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

126

Amino Acids

14.18

Weight (kDa)

4.97

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 7 - 97 1.4e-12 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 44, 334
AgsI TTSAA 2 cut(s) 98, 284
AjnI CCWGG 3 cut(s) 22, 165, 327
AjuI GAANNNNNNNTTGG 2 cut(s) 253, 285
AluBI AGCT 5 cut(s) 77, 92, 104, 200, 232
AluI AGCT 5 cut(s) 77, 92, 104, 200, 232
Alw21I GWGCWC 1 cut(s) 257
AoxI GGCC 2 cut(s) 242, 324
ApeKI GCWGC 2 cut(s) 77, 200
AspS9I GGNCC 2 cut(s) 20, 325
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 20
AxyI CCTNAGG 1 cut(s) 39
BalI TGGCCA 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 64, 187
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 3 cut(s) 24, 167, 329
BisI GCNGC 2 cut(s) 78, 201
BlsI GCNGC 2 cut(s) 79, 202
Bme1390I CCNGG 3 cut(s) 24, 167, 329
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 20, 325
BmrFI CCNGG 3 cut(s) 24, 167, 329
BmsI GCATC 1 cut(s) 290
BplI GAGNNNNNCTC 4 cut(s) 145, 177, 326, 358
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 334
Bse118I RCCGGY 1 cut(s) 303
Bse1I ACTGG 2 cut(s) 15, 298
Bse21I CCTNAGG 1 cut(s) 39
BseBI CCWGG 3 cut(s) 24, 167, 329
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 3 cut(s) 11, 175, 321
BseLI CCNNNNNNNGG 2 cut(s) 44, 334
BseNI ACTGG 2 cut(s) 15, 298
BseRI GAGGAG 2 cut(s) 129, 242
BseXI GCAGC 2 cut(s) 64, 187
BseYI CCCAGC 2 cut(s) 48, 104
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 2 cut(s) 244, 326
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 44, 334
BsnI GGCC 2 cut(s) 244, 326
Bsp1286I GDGCHC 1 cut(s) 257
BspANI GGCC 2 cut(s) 244, 326
BsrFI RCCGGY 1 cut(s) 303
BsrI ACTGG 2 cut(s) 15, 298
BssAI RCCGGY 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 327
Bst2UI CCWGG 3 cut(s) 24, 167, 329
Bst4CI ACNGT 2 cut(s) 67, 280
BstC8I GCNNGC 3 cut(s) 305, 309, 354
BstDEI CTNAG 1 cut(s) 39
BstENI CCTNNNNNAGG 2 cut(s) 42, 332
BstF5I GGATG 3 cut(s) 11, 175, 321
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 3 cut(s) 24, 167, 329
BstNSI RCATGY 2 cut(s) 311, 356
BstSCI CCNGG 3 cut(s) 22, 165, 327
BstV1I GCAGC 2 cut(s) 64, 187
Bsu36I CCTNAGG 1 cut(s) 39
BsuRI GGCC 2 cut(s) 244, 326
BtsCI GGATG 3 cut(s) 11, 175, 321
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 305, 309, 354
Cfr10I RCCGGY 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 20, 325
CsiI ACCWGGT 1 cut(s) 22
CviAII CATG 4 cut(s) 240, 308, 312, 353
DdeI CTNAG 1 cut(s) 39
EaeI YGGCCR 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 20
Eco81I CCTNAGG 1 cut(s) 39
EcoNI CCTNNNNNAGG 2 cut(s) 42, 332
EcoO109I RGGNCCY 1 cut(s) 325
EcoRII CCWGG 3 cut(s) 22, 165, 327
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 4 cut(s) 243, 311, 315, 356
FaiI YATR 7 cut(s) 191, 193, 206, 241, 309, 313, 354
FatI CATG 4 cut(s) 239, 307, 311, 352
Fnu4HI GCNGC 2 cut(s) 78, 201
FokI GGATG 2 cut(s) 182, 328
Fsp4HI GCNGC 2 cut(s) 78, 201
GluI GCNGC 2 cut(s) 78, 201
GsaI CCCAGC 2 cut(s) 52, 108
HaeIII GGCC 2 cut(s) 244, 326
HapII CCGG 1 cut(s) 304
Hin1II CATG 4 cut(s) 243, 311, 315, 356
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 304
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 67, 280
HpyCH4V TGCA 5 cut(s) 70, 212, 311, 356, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 4 cut(s) 243, 311, 315, 356
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 2 cut(s) 64, 187
LweI GCATC 1 cut(s) 290
MabI ACCWGGT 1 cut(s) 22
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 257
MlsI TGGCCA 1 cut(s) 244
MluCI AATT 1 cut(s) 146
MluNI TGGCCA 1 cut(s) 244
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 6 cut(s) 38, 107, 220, 280, 316, 328
Mox20I TGGCCA 1 cut(s) 244
Mph1103I ATGCAT 1 cut(s) 313
MroNI GCCGGC 1 cut(s) 303
MscI TGGCCA 1 cut(s) 244
MseI TTAA 3 cut(s) 6, 150, 176
MslI CAYNNNNRTG 1 cut(s) 168
Msp20I TGGCCA 1 cut(s) 244
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 3 cut(s) 24, 167, 329
MvaI CCWGG 3 cut(s) 24, 167, 329
MwoI GCNNNNNNNGC 1 cut(s) 209
NaeI GCCGGC 1 cut(s) 305
NgoMIV GCCGGC 1 cut(s) 303
NlaIII CATG 4 cut(s) 243, 311, 315, 356
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 2 cut(s) 311, 356
PaeI GCATGC 2 cut(s) 311, 356
PdiI GCCGGC 1 cut(s) 305
PflFI GACNNNGTC 1 cut(s) 24
PkrI GCNGC 2 cut(s) 79, 202
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Psp6I CCWGG 3 cut(s) 22, 165, 327
PspFI CCCAGC 2 cut(s) 48, 104
PspGI CCWGG 3 cut(s) 22, 165, 327
PspPI GGNCC 2 cut(s) 20, 325
PsyI GACNNNGTC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 3 cut(s) 6, 150, 176
SatI GCNGC 2 cut(s) 78, 201
Sau96I GGNCC 2 cut(s) 20, 325
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 3 cut(s) 24, 167, 329
SduI GDGCHC 1 cut(s) 257
SetI ASST 8 cut(s) 28, 79, 94, 106, 190, 202, 234, 373
SexAI ACCWGGT 1 cut(s) 22
SfaNI GCATC 1 cut(s) 290
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SphI GCATGC 2 cut(s) 311, 356
Sse9I AATT 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 22, 165, 327
TaaI ACNGT 2 cut(s) 67, 280
TaqI TCGA 2 cut(s) 112, 259
TasI AATT 1 cut(s) 146
Tru1I TTAA 3 cut(s) 6, 150, 176
Tru9I TTAA 3 cut(s) 6, 150, 176
TscAI CASTG 1 cut(s) 22
TseI GCWGC 2 cut(s) 77, 200
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 1 cut(s) 22
Tth111I GACNNNGTC 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 20
XagI CCTNNNNNAGG 2 cut(s) 42, 332
XceI RCATGY 2 cut(s) 311, 356
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.