Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006776

Physical Location & Seq

Genomic Coordinates Reverse (-)

22212243 .. 22216751

Gene Structure 4509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTGTGATATAGTGGCCCGTACGGGTCGGCATCAGCAACGCTACGAGGCCGGTTGTCGCCTTGTTGCCGGGTGTATTCCATTTAGATACAAAAATTCTGATGAGACTGATGAGGCCAATTCTGAGAAGATCATTCAGGTGCTTATGATTAACTCACCTAGTGGACCAGGTCTTTTGTTTCCTAAGGGAGGCTGGGAGAATGATGAAACTGTTGAGGAGGCTGCCGCAAGGGAAGCAGTGGAAGAAGCTGGAGTTCGAGGAGAGCTAATGGGTTTCCTGGGGTATTATTATTTTAAGAGCAAAACACACCAGGATGAGTTCAGTCCGGAAGGTGTGTGTAAAGCTGCTATGTTTGCCTTGTTTGTCAAGGAGGAGCTTGAGTCATGGCCTGAACAGAGCACCCGAAACAGAACATGGCTGACTGTCGCAGAGGCTATCGTGAGTTGCCGGCATGCATGGATGAGGGATGCCCTGGTGGAAGGCTTCTCAAAGTGGCATGCAGAAAAGATGACAGTTACGGGGGAGGGTGGGGAGGATGTAACATTGACTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

185

Amino Acids

20.65

Weight (kDa)

4.95

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12600 AT3G12600
fragaria_vesca	FvH4_7g03460 FvH4_7g03460
malus_domestica	MD02G1282400.v1.1 MD07G1048400.v1.1 MD14G1088400.v1.1
prunus_persica	Prupe.2G040100_v2.0.a1 Prupe.2G040100_v2.0.a1 Prupe.2G040100_v2.0.a1 Prupe.7G038300_v2.0.a1
pyrus_communis	pycom02g24100 pycom14g07850
rosa_chinensis	RchiOBHm_Chr1g0325791
rosa_laevigata	RLG00000030104
rosa_multiflora	Rmu_sc0012571.1_g000002 Rmu_sc0021974.1_g000002
rosa_roxburghii	Rroxscaffold_4G00324320
rosa_rugosa	Rorug01G0054700 Rorug01G0054800 Rorug01G0054900
rosa_samantha	Rh1AG071200 Rh1BG058200 Rh1CG070700 Rh1DG075400
rosa_wichuraiana	Rw1G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	325
AciI	CCGC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	94
AdeI	CACNNNGTG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	188
AjnI	CCWGG	4 cut(s)	166, 276, 309, 471
AluBI	AGCT	4 cut(s)	248, 265, 344, 376
AluI	AGCT	4 cut(s)	248, 265, 344, 376
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	325
AoxI	GGCC	4 cut(s)	15, 48, 114, 386
ApeKI	GCWGC	2 cut(s)	221, 344
ApoI	RAATTY	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	16, 164
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	208, 331
BciT130I	CCWGG	4 cut(s)	168, 278, 311, 473
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	159, 553
BisI	GCNGC	3 cut(s)	222, 225, 345
BlsI	GCNGC	3 cut(s)	223, 226, 346
Bme1390I	CCNGG	5 cut(s)	70, 168, 278, 311, 473
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	16, 164
BmrFI	CCNGG	5 cut(s)	70, 168, 278, 311, 473
BmsI	GCATC	2 cut(s)	40, 457
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	277, 471
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	2 cut(s)	50, 447
Bse21I	CCTNAGG	1 cut(s)	183
BseAI	TCCGGA	1 cut(s)	325
BseBI	CCWGG	4 cut(s)	168, 278, 311, 473
BseDI	CCNNGG	2 cut(s)	277, 471
BseGI	GGATG	4 cut(s)	319, 465, 472, 541
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	3 cut(s)	230, 273, 386
BseXI	GCAGC	2 cut(s)	208, 331
BseYI	CCCAGC	1 cut(s)	192
BshFI	GGCC	4 cut(s)	17, 50, 116, 388
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	4 cut(s)	51, 69, 326, 448
BsiWI	CGTACG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	4 cut(s)	17, 50, 116, 388
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp13I	TCCGGA	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	4 cut(s)	17, 50, 116, 388
BspCNI	CTCAG	1 cut(s)	115
BspEI	TCCGGA	1 cut(s)	325
BsrFI	RCCGGY	2 cut(s)	50, 447
BssAI	RCCGGY	2 cut(s)	50, 447
BssECI	CCNNGG	2 cut(s)	277, 471
BssMI	GATC	1 cut(s)	129
Bst2UI	CCWGG	4 cut(s)	168, 278, 311, 473
Bst4CI	ACNGT	3 cut(s)	211, 424, 514
BstC8I	GCNNGC	3 cut(s)	449, 453, 498
BstDEI	CTNAG	2 cut(s)	123, 183
BstENI	CCTNNNNNAGG	1 cut(s)	186
BstF5I	GGATG	4 cut(s)	319, 465, 472, 541
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 353
BstNI	CCWGG	4 cut(s)	168, 278, 311, 473
BstNSI	RCATGY	2 cut(s)	455, 500
BstSCI	CCNGG	5 cut(s)	68, 166, 276, 309, 471
BstV1I	GCAGC	2 cut(s)	208, 331
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	4 cut(s)	17, 50, 116, 388
BtsCI	GGATG	4 cut(s)	319, 465, 472, 541
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	449, 453, 498
Cfr10I	RCCGGY	2 cut(s)	50, 447
Cfr13I	GGNCC	2 cut(s)	16, 164
CsiI	ACCWGGT	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	5 cut(s)	384, 414, 452, 456, 497
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	2 cut(s)	123, 183
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
DraIII	CACNNNGTG	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	183
EcoNI	CCTNNNNNAGG	1 cut(s)	186
EcoRII	CCWGG	4 cut(s)	166, 276, 309, 471
EcoT22I	ATGCAT	1 cut(s)	457
FaeI	CATG	5 cut(s)	387, 417, 455, 459, 500
FaiI	YATR	8 cut(s)	11, 146, 350, 385, 415, 453, 457, 498
FatI	CATG	5 cut(s)	383, 413, 451, 455, 496
Fnu4HI	GCNGC	3 cut(s)	222, 225, 345
FokI	GGATG	4 cut(s)	326, 472, 479, 548
Fsp4HI	GCNGC	3 cut(s)	222, 225, 345
FspBI	CTAG	2 cut(s)	159, 553
GluI	GCNGC	3 cut(s)	222, 225, 345
GsaI	CCCAGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	4 cut(s)	17, 50, 116, 388
HapII	CCGG	4 cut(s)	51, 69, 326, 448
Hin1II	CATG	5 cut(s)	387, 417, 455, 459, 500
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	4 cut(s)	51, 69, 326, 448
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	100, 124
Hpy188III	TCNNGA	2 cut(s)	326, 439
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	323, 473
HpyCH4III	ACNGT	3 cut(s)	211, 424, 514
HpyCH4V	TGCA	2 cut(s)	455, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 353
HpyF3I	CTNAG	2 cut(s)	123, 183
Hsp92II	CATG	5 cut(s)	387, 417, 455, 459, 500
Kpn2I	TCCGGA	1 cut(s)	325
KroI	GCCGGC	1 cut(s)	447
KroNI	GCCGGC	1 cut(s)	449
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	2 cut(s)	208, 331
LweI	GCATC	2 cut(s)	40, 457
MabI	ACCWGGT	1 cut(s)	166
MaeI	CTAG	2 cut(s)	159, 553
MaeIII	GTNAC	2 cut(s)	514, 538
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	2 cut(s)	139, 254
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	2 cut(s)	94, 118
MlyI	GAGTC	1 cut(s)	389
Mph1103I	ATGCAT	1 cut(s)	457
MroI	TCCGGA	1 cut(s)	325
MroNI	GCCGGC	1 cut(s)	447
MseI	TTAA	2 cut(s)	150, 294
MslI	CAYNNNNRTG	2 cut(s)	137, 312
MspI	CCGG	4 cut(s)	51, 69, 326, 448
MspR9I	CCNGG	5 cut(s)	70, 168, 278, 311, 473
MvaI	CCWGG	4 cut(s)	168, 278, 311, 473
MwoI	GCNNNNNNNGC	2 cut(s)	233, 353
NaeI	GCCGGC	1 cut(s)	449
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	1 cut(s)	129
NgoMIV	GCCGGC	1 cut(s)	447
NlaIII	CATG	5 cut(s)	387, 417, 455, 459, 500
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	2 cut(s)	455, 500
PaeI	GCATGC	2 cut(s)	455, 500
PdiI	GCCGGC	1 cut(s)	449
Pfl23II	CGTACG	1 cut(s)	20
PflFI	GACNNNGTC	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	223, 226, 346
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Psp6I	CCWGG	4 cut(s)	166, 276, 309, 471
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	4 cut(s)	166, 276, 309, 471
PspLI	CGTACG	1 cut(s)	20
PspPI	GGNCC	2 cut(s)	16, 164
PsyI	GACNNNGTC	1 cut(s)	168
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	2 cut(s)	137, 312
SaqAI	TTAA	2 cut(s)	150, 294
SatI	GCNGC	3 cut(s)	222, 225, 345
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	16, 164
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	5 cut(s)	70, 168, 278, 311, 473
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	8 cut(s)	141, 160, 172, 250, 267, 334, 346, 378
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	40, 457
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	137, 312
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	2 cut(s)	455, 500
Sse9I	AATT	2 cut(s)	94, 118
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	2 cut(s)	159, 553
StyD4I	CCNGG	5 cut(s)	68, 166, 276, 309, 471
TaaI	ACNGT	3 cut(s)	211, 424, 514
TaqI	TCGA	1 cut(s)	256
TasI	AATT	2 cut(s)	94, 118
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	150, 294
Tru9I	TTAA	2 cut(s)	150, 294
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	2 cut(s)	221, 344
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	243
Tth111I	GACNNNGTC	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	164
XagI	CCTNNNNNAGG	1 cut(s)	186
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	2 cut(s)	455, 500
XspI	CTAG	2 cut(s)	159, 553
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.