Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021974.1

Orthogroup ID

OG0006776

Physical Location & Seq

Genomic Coordinates Reverse (-)

19884 .. 23861

Gene Structure 3978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021974.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgtgtgatatagtggcccgtacgggtcgacatcagcaacgctacgagggcgggtgtcgccttgttgccgggtgtattccattcaggtacagaaattctgatgagagtggcgatgctgattctgagaagattgttgaggtccttatgattaactcatccagtggaccaggtcttttatttcctaagggaggctgggagaatgatgaaactgtgcaggaagctgctgtaagagaagctattgaagaagctggggatttagtggggtattaccaatttaagagcaaaactcaccaggatgagttaaacccagaaggtatatgtagagctgctatgtttgcattgttcgtcaaggaggagcttgagtcatggccagaacagagcactcgaaacagaacttggctgactgttcaagaggctactggtagatgccggcatgcatggatgagtgaggccctggtggagggtttctcaaagtggcatgcagaaaagatgataggtgcagggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

168

Amino Acids

18.88

Weight (kDa)

5.08

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12600 AT3G12600
fragaria_vesca	FvH4_7g03460 FvH4_7g03460
malus_domestica	MD02G1282400.v1.1 MD07G1048400.v1.1 MD14G1088400.v1.1
prunus_persica	Prupe.2G040100_v2.0.a1 Prupe.2G040100_v2.0.a1 Prupe.2G040100_v2.0.a1 Prupe.7G038300_v2.0.a1
pyrus_communis	pycom02g24100 pycom14g07850
rosa_chinensis	RchiOBHm_Chr1g0325791
rosa_laevigata	RLG00000030104
rosa_multiflora	Rmu_sc0012571.1_g000002 Rmu_sc0021974.1_g000002
rosa_roxburghii	Rroxscaffold_4G00324320
rosa_rugosa	Rorug01G0054700 Rorug01G0054800 Rorug01G0054900
rosa_samantha	Rh1AG071200 Rh1BG058200 Rh1CG070700 Rh1DG075400
rosa_wichuraiana	Rw1G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	1 cut(s)	51
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	94
AfaI	GTAC	2 cut(s)	22, 89
AfiI	CCNNNNNNNGG	2 cut(s)	188, 460
AgsI	TTSAA	2 cut(s)	242, 410
AjnI	CCWGG	3 cut(s)	166, 291, 453
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AluBI	AGCT	5 cut(s)	221, 236, 248, 326, 358
AluI	AGCT	5 cut(s)	221, 236, 248, 326, 358
Alw21I	GWGCWC	1 cut(s)	383
AoxI	GGCC	3 cut(s)	15, 368, 450
ApeKI	GCWGC	2 cut(s)	221, 326
ApoI	RAATTY	1 cut(s)	94
AspS9I	GGNCC	4 cut(s)	16, 139, 164, 451
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	2 cut(s)	139, 164
AxyI	CCTNAGG	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	208, 313
BciT130I	CCWGG	3 cut(s)	168, 293, 455
BcnI	CCSGG	1 cut(s)	70
BisI	GCNGC	2 cut(s)	222, 327
BlsI	GCNGC	2 cut(s)	223, 328
Bme1390I	CCNGG	4 cut(s)	70, 168, 293, 455
Bme18I	GGWCC	2 cut(s)	139, 164
BmgT120I	GGNCC	4 cut(s)	16, 139, 164, 451
BmrFI	CCNGG	4 cut(s)	70, 168, 293, 455
BmsI	GCATC	2 cut(s)	103, 416
BplI	GAGNNNNNCTC	4 cut(s)	271, 303, 452, 484
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 460
Bse118I	RCCGGY	1 cut(s)	429
Bse1I	ACTGG	2 cut(s)	159, 424
Bse21I	CCTNAGG	1 cut(s)	183
BseBI	CCWGG	3 cut(s)	168, 293, 455
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	3 cut(s)	155, 301, 447
BseLI	CCNNNNNNNGG	2 cut(s)	188, 460
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	159, 424
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	208, 313
BseYI	CCCAGC	2 cut(s)	192, 248
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	17, 370, 452
BsiHKAI	GWGCWC	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	69, 430
BsiWI	CGTACG	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	188, 460
BsnI	GGCC	3 cut(s)	17, 370, 452
Bsp1286I	GDGCHC	1 cut(s)	383
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	3 cut(s)	17, 370, 452
BspCNI	CTCAG	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	159, 424
BssAI	RCCGGY	1 cut(s)	429
BssECI	CCNNGG	1 cut(s)	453
Bst2UI	CCWGG	3 cut(s)	168, 293, 455
Bst4CI	ACNGT	2 cut(s)	211, 406
BstC8I	GCNNGC	3 cut(s)	431, 435, 480
BstDEI	CTNAG	2 cut(s)	123, 183
BstENI	CCTNNNNNAGG	2 cut(s)	186, 458
BstF5I	GGATG	3 cut(s)	155, 301, 447
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 57, 335
BstNI	CCWGG	3 cut(s)	168, 293, 455
BstNSI	RCATGY	2 cut(s)	437, 482
BstSCI	CCNGG	4 cut(s)	68, 166, 291, 453
BstV1I	GCAGC	2 cut(s)	208, 313
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	17, 370, 452
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	155, 301, 447
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	3 cut(s)	431, 435, 480
Cfr10I	RCCGGY	1 cut(s)	429
Cfr13I	GGNCC	4 cut(s)	16, 139, 164, 451
CsiI	ACCWGGT	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	21, 88
CviAII	CATG	4 cut(s)	366, 434, 438, 479
CviQI	GTAC	2 cut(s)	21, 88
DdeI	CTNAG	2 cut(s)	123, 183
EaeI	YGGCCR	1 cut(s)	368
Eco47I	GGWCC	2 cut(s)	139, 164
Eco81I	CCTNAGG	1 cut(s)	183
EcoNI	CCTNNNNNAGG	2 cut(s)	186, 458
EcoO109I	RGGNCCY	2 cut(s)	139, 451
EcoRII	CCWGG	3 cut(s)	166, 291, 453
EcoT22I	ATGCAT	1 cut(s)	439
FaeI	CATG	4 cut(s)	369, 437, 441, 482
FaiI	YATR	9 cut(s)	11, 146, 317, 319, 332, 367, 435, 439, 480
FatI	CATG	4 cut(s)	365, 433, 437, 478
FauI	CCCGC	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	222, 327
FokI	GGATG	3 cut(s)	142, 308, 454
Fsp4HI	GCNGC	2 cut(s)	222, 327
GluI	GCNGC	2 cut(s)	222, 327
GsaI	CCCAGC	2 cut(s)	196, 252
HaeIII	GGCC	3 cut(s)	17, 370, 452
HapII	CCGG	2 cut(s)	69, 430
Hin1II	CATG	4 cut(s)	369, 437, 441, 482
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	2 cut(s)	119, 362
HpaII	CCGG	2 cut(s)	69, 430
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	29, 164
Hpy188I	TCNGA	2 cut(s)	100, 124
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	2 cut(s)	29, 164
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	2 cut(s)	211, 406
HpyCH4V	TGCA	5 cut(s)	214, 338, 437, 482, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 57, 335
HpyF3I	CTNAG	2 cut(s)	123, 183
Hsp92II	CATG	4 cut(s)	369, 437, 441, 482
KroI	GCCGGC	1 cut(s)	429
KroNI	GCCGGC	1 cut(s)	431
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	2 cut(s)	208, 313
LweI	GCATC	2 cut(s)	103, 416
MabI	ACCWGGT	1 cut(s)	166
MboII	GAAGA	2 cut(s)	139, 254
MhlI	GDGCHC	1 cut(s)	383
MlsI	TGGCCA	1 cut(s)	370
MluCI	AATT	2 cut(s)	94, 272
MluNI	TGGCCA	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	7 cut(s)	40, 130, 182, 346, 406, 442, 454
Mox20I	TGGCCA	1 cut(s)	370
Mph1103I	ATGCAT	1 cut(s)	439
MroNI	GCCGGC	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	370
MseI	TTAA	3 cut(s)	150, 276, 302
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	370
MspI	CCGG	2 cut(s)	69, 430
MspR9I	CCNGG	4 cut(s)	70, 168, 293, 455
MvaI	CCWGG	3 cut(s)	168, 293, 455
MwoI	GCNNNNNNNGC	3 cut(s)	48, 57, 335
NaeI	GCCGGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	70
NgoMIV	GCCGGC	1 cut(s)	429
NlaIII	CATG	4 cut(s)	369, 437, 441, 482
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	2 cut(s)	437, 482
PaeI	GCATGC	2 cut(s)	437, 482
PdiI	GCCGGC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	119
Pfl23II	CGTACG	1 cut(s)	20
PflFI	GACNNNGTC	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	223, 328
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	3 cut(s)	166, 291, 453
PspFI	CCCAGC	2 cut(s)	192, 248
PspGI	CCWGG	3 cut(s)	166, 291, 453
PspLI	CGTACG	1 cut(s)	20
PspPI	GGNCC	4 cut(s)	16, 139, 164, 451
PspPPI	RGGWCCY	1 cut(s)	139
PsyI	GACNNNGTC	1 cut(s)	168
RsaI	GTAC	2 cut(s)	22, 89
RsaNI	GTAC	2 cut(s)	21, 88
RseI	CAYNNNNRTG	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	150, 276, 302
SatI	GCNGC	2 cut(s)	222, 327
Sau96I	GGNCC	4 cut(s)	16, 139, 164, 451
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	4 cut(s)	70, 168, 293, 455
SduI	GDGCHC	1 cut(s)	383
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	103, 416
SinI	GGWCC	2 cut(s)	139, 164
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SphI	GCATGC	2 cut(s)	437, 482
Sse9I	AATT	2 cut(s)	94, 272
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	68, 166, 291, 453
TaaI	ACNGT	2 cut(s)	211, 406
TaqI	TCGA	2 cut(s)	28, 385
TasI	AATT	2 cut(s)	94, 272
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	150, 276, 302
Tru9I	TTAA	3 cut(s)	150, 276, 302
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	2 cut(s)	221, 326
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	139, 164
XagI	CCTNNNNNAGG	2 cut(s)	186, 458
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	2 cut(s)	437, 482
XmiI	GTMKAC	1 cut(s)	28
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.