Prupe.2G113800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
17195019 .. 17195779
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G113800.1

Sequence Viewer

Length: 216 bp
ATGAACGACTCGAACTCTGAAATCTCCTCAATGAAACCCAGCAACAATAATAATGCTGCCAAGGTCACAAAGCCTCCTTTCGTACCAGCCAAAGACGACACCAAACCAGTGCTTCAAGACCCAATACTGCGGTCTGATCCGATTGAGACAGAGGAAGCTGTGCTTCGGTTGCCTACACTTCTATTAACAGATCAAAAAATCCTCAACCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.84

Weight (kDa)

5.2

Isoelectric Point (pI)

68.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 130
AclWI GGATC 1 cut(s) 131
AfaI GTAC 1 cut(s) 84
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bse1I ACTGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 136, 190
BspACI CCGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 136, 190
BssT1I CCWWGG 1 cut(s) 60
BstKTI GATC 2 cut(s) 139, 193
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 136, 190
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 114
Csp6I GTAC 1 cut(s) 83
CviJI RGCY 3 cut(s) 73, 89, 158
CviKI_1 RGCY 3 cut(s) 73, 89, 158
CviQI GTAC 1 cut(s) 83
DpnI GATC 2 cut(s) 138, 192
DpnII GATC 2 cut(s) 136, 190
Eco130I CCWWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FalI AAGNNNNNCTT 2 cut(s) 147, 179
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 42
HinfI GANTC 1 cut(s) 8
Hpy188I TCNGA 3 cut(s) 19, 136, 141
Hpy188III TCNNGA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 136, 190
LpnPI CCDG 3 cut(s) 52, 99, 120
Lsp1109I GCAGC 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 138, 192
MboI GATC 2 cut(s) 136, 190
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 4 cut(s) 37, 84, 145, 212
MseI TTAA 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeII GATC 2 cut(s) 136, 190
NmuCI GTSAC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PspFI CCCAGC 1 cut(s) 38
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 136, 190
SchI GAGTC 1 cut(s) 2
SetI ASST 2 cut(s) 66, 160
SgeI CNNG 6 cut(s) 22, 51, 73, 98, 119, 128
SsiI CCGC 1 cut(s) 130
StyI CCWWGG 1 cut(s) 60
TaqI TCGA 1 cut(s) 11
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 17, 47
TspRI CASTG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.