Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012243

Physical Location & Seq

Genomic Coordinates Forward (+)

2565923 .. 2566236

Gene Structure 314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAAAGCTTCGGAGTCAGGGGTTTCAGTGGCGCCCAGCAACAAAGAGAAGAAGCCCACGAAGCCTCAATTCGTTCCGGCCAAAGATGACAGCAAACCTGTGCTTCAAGACCCAATTCTGAGGTCGGACCCAATTGAGACAGAGGAAGCTGTGCTTAGATTGCCTCCGTTTTCTCTGTGCCCAGATCATCAAGGAAGGGTTAACACCAAAATGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

7.87

Weight (kDa)

7.88

Isoelectric Point (pI)

80.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20480
malus_domestica	MD03G1011000.v1.1
prunus_persica	Prupe.2G113800_v2.0.a1 Prupe.6G011500_v2.0.a1
pyrus_communis	pycom03g00980
rosa_chinensis	RchiOBHm_Chr5g0081401
rosa_laevigata	RLG00000019067 RLG00000021682
rosa_multiflora	Rmu_sc0002735.1_g000021 Rmu_sc0005344.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002140 Rroxscaffold_2G00083930
rosa_rugosa	Rorug05G0476100
rosa_samantha	Rh2AG593500 Rh2BG605100 Rh2CG575900 Rh5BG552000
rosa_wichuraiana	Rw2G049420 Rw5G049060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	107
AluBI	AGCT	2 cut(s)	8, 149
AluI	AGCT	2 cut(s)	8, 149
Alw26I	GTCTC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	2 cut(s)	33, 129
BsaHI	GRCGYC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	182
BseYI	CCCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	184
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	33, 129
BspT107I	GGYRCC	1 cut(s)	31
BssMI	GATC	1 cut(s)	184
BssNI	GRCGYC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	119, 155
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 160
BstSLI	GKGCMC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	33
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	127
CviJI	RGCY	5 cut(s)	8, 55, 64, 80, 149
CviKI_1	RGCY	5 cut(s)	8, 55, 64, 80, 149
DdeI	CTNAG	2 cut(s)	119, 155
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	127
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
GlaI	GCGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	77
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	32
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	1 cut(s)	14
HpaI	GTTAAC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	13, 120, 127
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 160
HpyF3I	CTNAG	2 cut(s)	119, 155
Hsp92I	GRCGYC	1 cut(s)	32
HspAI	GCGC	1 cut(s)	32
KasI	GGCGCC	1 cut(s)	31
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	184
LpnPI	CCDG	5 cut(s)	3, 49, 90, 111, 195
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	61
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	3 cut(s)	68, 114, 132
Mly113I	GGCGCC	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	4 cut(s)	75, 114, 136, 174
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	61, 160
NarI	GGCGCC	1 cut(s)	32
NdeII	GATC	1 cut(s)	184
NlaIV	GGNNCC	2 cut(s)	33, 129
PleI	GAGTC	1 cut(s)	22
PluTI	GGCGCC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	33, 129
PspPI	GGNCC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	4 cut(s)	10, 100, 125, 151
SfoI	GGCGCC	1 cut(s)	33
SgeI	CNNG	8 cut(s)	30, 48, 70, 89, 110, 119, 194, 203
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	68, 114, 132
SspDI	GGCGCC	1 cut(s)	31
TasI	AATT	3 cut(s)	68, 114, 132
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.