Prupe.6G011500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
839096 .. 839835
740 bp
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UTR
Exon/CDS
Intron
Prupe.6G011500.1

Sequence Viewer

Length: 222 bp
ATGAAAGACTCGGACTCTGAAATCTCCTCCATGAAACCCAGCAACAATAATAATGCTGCCAAGCTCACAAAGCCTCCTTTCGTACCAGCCAAAGACGACACCAAACCTGTGCTTCAAGACCCAATACTGAGGTCTGATCCGATTGAGACAGAGGAAGCTGTGCTTCGGTTGCCTCCATTTCCTATTAACAGATCAAAAAATCCTCAACCCAAAATGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.11

Weight (kDa)

8.04

Isoelectric Point (pI)

98.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 131
AfaI GTAC 1 cut(s) 84
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 2 cut(s) 64, 158
AluI AGCT 2 cut(s) 64, 158
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
BseMII CTCAG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 136, 191
BspCNI CTCAG 1 cut(s) 120
BspPI GGATC 1 cut(s) 131
BssMI GATC 2 cut(s) 136, 191
BstDEI CTNAG 1 cut(s) 128
BstKTI GATC 2 cut(s) 139, 194
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 136, 191
BstMWI GCNNNNNNNGC 2 cut(s) 70, 169
BstV1I GCAGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 83
CviAII CATG 1 cut(s) 31
CviJI RGCY 4 cut(s) 64, 73, 89, 158
CviKI_1 RGCY 4 cut(s) 64, 73, 89, 158
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 138, 193
DpnII GATC 2 cut(s) 136, 191
FaeI CATG 1 cut(s) 34
FaiI YATR 1 cut(s) 32
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 42
Hin1II CATG 1 cut(s) 34
HinfI GANTC 2 cut(s) 8, 14
Hpy188I TCNGA 4 cut(s) 13, 19, 136, 141
Hpy188III TCNNGA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 169
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 2 cut(s) 136, 191
LpnPI CCDG 3 cut(s) 52, 99, 120
Lsp1109I GCAGC 1 cut(s) 43
MalI GATC 2 cut(s) 138, 193
MboI GATC 2 cut(s) 136, 191
MlyI GAGTC 2 cut(s) 2, 8
MnlI CCTC 6 cut(s) 37, 84, 123, 145, 183, 213
MseI TTAA 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 70, 169
NdeII GATC 2 cut(s) 136, 191
NlaIII CATG 1 cut(s) 34
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 2 cut(s) 2, 8
PpsI GAGTC 2 cut(s) 2, 8
PspFI CCCAGC 1 cut(s) 38
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 136, 191
SchI GAGTC 2 cut(s) 2, 8
SetI ASST 4 cut(s) 66, 109, 134, 160
SgeI CNNG 7 cut(s) 22, 43, 51, 73, 98, 119, 128
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 17, 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.