Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0012243

Physical Location & Seq

Genomic Coordinates Reverse (-)

75574617 .. 75576957

Gene Structure 2341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG575900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGGCCAGTAACGAAGAGAAGAAGCCCACAAAGCCTCCATCCGTTCTGGGTAAAGATGACAGCAAACCTGTGCTTCAAGACCCAATTCTGACGTCGGACCCAATTGAGACAGAGGAAGGCGTGCTGAGATTGCCTCCATCTTCCCTACTCCCTGACTATCAAGAAACGCTTAACACCAACTCTTCTTTTACTATATTCACGAAGCCAACGCTGCGCATTCTAATTGTCAGCGATGATATGAGCCTCAGTGAATTAATGATCGAAGCCCTGGGTGAATATGAATTGACAAACTTTTCAGACACTGTGACAGCTCTGAAAAACCAGTTCGATATAGGTTCACCTGCTGATGTCCTACTTCTTGACTTGGATACTTTGTACAAGGAATTGGATGAGATGGAGAAGACAAGGAAGAGTCAAGATGAGGAAAAGATGGTCTGGAGTATTGCGGCACCTGAATCAACTGCTTTTTATGCTGCATTTGAATATTTGTACTCCGACTGTGTGAAAAACCGAGAGAGTGTGAAAAGCAGGGAGGACAGGGAAGTAGCGGATAAATACATGCCTATTTCTCATTTCATTGTTGGTATTTTGAGCTATGAGATATTAGATACAGACAAAGTCAACAAGAAATTCAGAGAGGAGAAGTTCAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

24.98

Weight (kDa)

4.52

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20480
malus_domestica	MD03G1011000.v1.1
prunus_persica	Prupe.2G113800_v2.0.a1 Prupe.6G011500_v2.0.a1
pyrus_communis	pycom03g00980
rosa_chinensis	RchiOBHm_Chr5g0081401
rosa_laevigata	RLG00000019067 RLG00000021682
rosa_multiflora	Rmu_sc0002735.1_g000021 Rmu_sc0005344.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002140 Rroxscaffold_2G00083930
rosa_rugosa	Rorug05G0476100
rosa_samantha	Rh2AG593500 Rh2BG605100 Rh2CG575900 Rh5BG552000
rosa_wichuraiana	Rw2G049420 Rw5G049060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	352
AatII	GACGTC	1 cut(s)	98
Acc16I	TGCGCA	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	451
AciI	CCGC	2 cut(s)	449, 551
AcsI	RAATTY	1 cut(s)	632
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	2 cut(s)	380, 494
AgsI	TTSAA	3 cut(s)	80, 485, 652
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	2 cut(s)	314, 597
AluI	AGCT	2 cut(s)	314, 597
Alw26I	GTCTC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	214, 476
ApoI	RAATTY	1 cut(s)	632
AseI	ATTAAT	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	287, 333
AvaII	GGWCC	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	201, 463
BccI	CCATC	4 cut(s)	49, 148, 391, 427
BciT130I	CCWGG	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	364
BisI	GCNGC	3 cut(s)	215, 450, 477
BlsI	GCNGC	3 cut(s)	216, 451, 478
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	2 cut(s)	102, 453
BmrFI	CCNGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	410
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpmI	CTGGAG	1 cut(s)	460
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	270, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bse1I	ACTGG	2 cut(s)	9, 325
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	270, 271
BseGI	GGATG	2 cut(s)	41, 397
BseMII	CTCAG	2 cut(s)	119, 262
BseNI	ACTGG	2 cut(s)	9, 325
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	2 cut(s)	201, 463
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	451
BsmAI	GTCTC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	2 cut(s)	449, 551
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	120, 261
BspLI	GGNNCC	2 cut(s)	102, 453
BspMI	ACCTGC	1 cut(s)	352
BspT107I	GGYRCC	1 cut(s)	451
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	9, 325
BssECI	CCNNGG	2 cut(s)	270, 271
BssMI	GATC	1 cut(s)	261
BssNI	GRCGYC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	307, 503
Bst6I	CTCTTC	3 cut(s)	12, 190, 407
BstACI	GRCGYC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	128, 248
BstF5I	GGATG	2 cut(s)	41, 397
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 133, 214, 473
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	201, 463
BstV2I	GAAGAC	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	41, 397
BtsIMutI	CAGTG	2 cut(s)	256, 303
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	379, 493
CviAII	CATG	1 cut(s)	562
CviJI	RGCY	8 cut(s)	8, 28, 37, 208, 246, 269, 314, 597
CviKI_1	RGCY	8 cut(s)	8, 28, 37, 208, 246, 269, 314, 597
CviQI	GTAC	2 cut(s)	379, 493
DdeI	CTNAG	2 cut(s)	128, 248
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eam1104I	CTCTTC	3 cut(s)	12, 190, 407
EarI	CTCTTC	3 cut(s)	12, 190, 407
Eco47I	GGWCC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	565
FaiI	YATR	7 cut(s)	197, 242, 282, 335, 474, 563, 600
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	215, 450, 477
FokI	GGATG	2 cut(s)	28, 404
Fsp4HI	GCNGC	3 cut(s)	215, 450, 477
FspI	TGCGCA	1 cut(s)	218
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	3 cut(s)	215, 450, 477
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	565
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	2 cut(s)	415, 458
HphI	GGTGA	2 cut(s)	287, 333
Hpy166II	GTNNAC	2 cut(s)	341, 625
Hpy188I	TCNGA	6 cut(s)	93, 100, 301, 318, 499, 638
Hpy188III	TCNNGA	7 cut(s)	80, 164, 202, 362, 419, 439, 652
Hpy8I	GTNNAC	2 cut(s)	341, 625
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	307, 503
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 133, 214, 473
HpyF3I	CTNAG	2 cut(s)	128, 248
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	565
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	261
Lsp1109I	GCAGC	2 cut(s)	201, 463
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	11, 307
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	6 cut(s)	29, 34, 135, 177, 415, 424
MfeI	CAATTG	1 cut(s)	105
MluCI	AATT	7 cut(s)	87, 105, 225, 254, 284, 386, 632
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	2 cut(s)	78, 522
MnlI	CCTC	7 cut(s)	48, 109, 147, 257, 418, 529, 634
MseI	TTAA	2 cut(s)	174, 257
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	4 cut(s)	34, 133, 214, 473
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	1 cut(s)	565
NlaIV	GGNNCC	2 cut(s)	102, 453
NmuCI	GTSAC	1 cut(s)	307
NsbI	TGCGCA	1 cut(s)	218
NspI	RCATGY	1 cut(s)	565
PaqCI	CACCTGC	1 cut(s)	352
PasI	CCCWGGG	1 cut(s)	271
PctI	GAATGC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	458
PflFI	GACNNNGTC	1 cut(s)	620
PkrI	GCNGC	3 cut(s)	216, 451, 478
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PshBI	ATTAAT	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	102, 453
PspPI	GGNCC	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	305
PsyI	GACNNNGTC	1 cut(s)	620
RsaI	GTAC	2 cut(s)	380, 494
RsaNI	GTAC	2 cut(s)	379, 493
SaqAI	TTAA	2 cut(s)	174, 257
SatI	GCNGC	3 cut(s)	215, 450, 477
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	7 cut(s)	73, 98, 316, 340, 346, 457, 599
SinI	GGWCC	1 cut(s)	100
Sse9I	AATT	7 cut(s)	87, 105, 225, 254, 284, 386, 632
SsiI	CCGC	2 cut(s)	449, 551
SspI	AATATT	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	307, 503
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	264, 330
TasI	AATT	7 cut(s)	87, 105, 225, 254, 284, 386, 632
TatI	WGTACW	2 cut(s)	378, 492
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	2 cut(s)	174, 257
Tru9I	TTAA	2 cut(s)	174, 257
TscAI	CASTG	2 cut(s)	256, 310
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	214, 476
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	297, 568
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	256, 310
Tth111I	GACNNNGTC	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	100
VspI	ATTAAT	1 cut(s)	257
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	1 cut(s)	565
ZraI	GACGTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.