Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012243

Physical Location & Seq

Genomic Coordinates Reverse (-)

77250439 .. 77252541

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021682

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGGCCAGTAACGAAGAGAAGCCTCCATCCGTTCCGGGCAAAGATGACAGCAAACCTGTGCTTCAAGACCCAATTCTGACGTCGGACCCAATTGAGACAGAGGAAGGCGTGCTGAGATTGCCTCCATCTTCCCTACTCCCTGACCATCAAGAGACGATTAACACCAAAATGGGGCTTAATGATGAGGGCCATGAAGTTGATGATCACAAGTCTGCTGTTTCGAAAATAAGACGTTTATGGAAGACAGAATTCACGAAGCCAACGCTGCGCATTCTAATTGTCAGCCATGATATGAGTCTCAGTAAATTCATGACCGAAGCCCTGGGTGAATATGAAGTAAGGGACCGGCAAGATGCTGATTTTGTGTTGTTGCGTCAGTTGACAAACTTTTCAGACGTTGTGACAGCTCTGAAAAAACAGTTCGATATAGGTGCACCTGTTGATGTCCTACTTCTTGACTTGGATACTTTGTACAAGGAATTGGATGAGATGGAGAAGATAAGGAAGAGTCAAGATGAGGAAAAGATGGTCTGGAGTATTGCAGCACCTGAATCAGCTGCTGTAGATGCCTTTTATGCTGCATTTGAATATGTGGAGTCCGACTGGGTGAAAAACCCCGAGAGTGTGAAAAGCAGGGAGGACAGGGAAGTAGCGCATAAATACATGCCTTTTTCTCATTTCATTGTTGGTATTTCAAGCTATGAGATATCAGAAGACAAAGTCAACAAGATGTTTAGAGAGGAAAAGTTCAAGATGAGATTTTGGGGAGAAACCTGTATTGTTCAAAAGAGTTTAAATTGTGAGAAGATGTTGAAGATTTTAGAAGAAGCAATTTCTACTTGGAAGCAAGCTAACGGAATCATCCATGGAGAACTTGAGAGATATTTGCAGAAGCATGGGGATGGAATCAGCGGTACAGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

35.36

Weight (kDa)

4.96

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20480
malus_domestica	MD03G1011000.v1.1
prunus_persica	Prupe.2G113800_v2.0.a1 Prupe.6G011500_v2.0.a1
pyrus_communis	pycom03g00980
rosa_chinensis	RchiOBHm_Chr5g0081401
rosa_laevigata	RLG00000019067 RLG00000021682
rosa_multiflora	Rmu_sc0002735.1_g000021 Rmu_sc0005344.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002140 Rroxscaffold_2G00083930
rosa_rugosa	Rorug05G0476100
rosa_samantha	Rh2AG593500 Rh2BG605100 Rh2CG575900 Rh5BG552000
rosa_wichuraiana	Rw2G049420 Rw5G049060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	86
Acc16I	TGCGCA	1 cut(s)	272
AciI	CCGC	2 cut(s)	5, 915
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	251, 308
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	2 cut(s)	476, 919
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	6 cut(s)	68, 590, 699, 754, 788, 817
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	4 cut(s)	410, 560, 702, 854
AluI	AGCT	4 cut(s)	410, 560, 702, 854
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	4 cut(s)	92, 149, 305, 917
Alw44I	GTGCAC	1 cut(s)	435
AlwNI	CAGNNNCTG	2 cut(s)	551, 563
Ama87I	CYCGRG	1 cut(s)	620
AoxI	GGCC	2 cut(s)	6, 190
ApaLI	GTGCAC	1 cut(s)	435
ApeKI	GCWGC	4 cut(s)	268, 545, 560, 581
ApoI	RAATTY	2 cut(s)	251, 308
AspLEI	GCGC	2 cut(s)	273, 658
AspS9I	GGNCC	3 cut(s)	88, 190, 346
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	341, 622
AsuII	TTCGAA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	88, 346
BaeGI	GKGCMC	1 cut(s)	439
BbsI	GAAGAC	2 cut(s)	251, 723
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	4 cut(s)	255, 547, 557, 568
BccI	CCATC	6 cut(s)	37, 136, 156, 487, 523, 899
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	460
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	4 cut(s)	92, 149, 305, 917
BfmI	CTRYAG	1 cut(s)	564
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	5 cut(s)	6, 269, 546, 561, 582
BlsI	GCNGC	5 cut(s)	7, 270, 547, 562, 583
Bme1390I	CCNGG	2 cut(s)	39, 326
Bme18I	GGWCC	2 cut(s)	88, 346
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	3 cut(s)	88, 190, 346
BmiI	GGNNCC	2 cut(s)	90, 347
BmrFI	CCNGG	2 cut(s)	39, 326
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	2 cut(s)	346, 559
BmuI	ACTGGG	1 cut(s)	616
BpiI	GAAGAC	2 cut(s)	251, 723
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpmI	CTGGAG	1 cut(s)	556
Bpu14I	TTCGAA	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	899
BpuMI	CCSGG	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	324, 325, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse118I	RCCGGY	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	9, 611
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	3 cut(s)	324, 325, 868
BseGI	GGATG	4 cut(s)	29, 493, 864, 910
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	107, 316
BseNI	ACTGG	2 cut(s)	9, 611
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	4 cut(s)	255, 547, 557, 568
BshFI	GGCC	2 cut(s)	8, 192
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	2 cut(s)	38, 349
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	4 cut(s)	92, 149, 305, 917
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	8, 192
BsoBI	CYCGRG	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	868
BspACI	CCGC	2 cut(s)	5, 915
BspANI	GGCC	2 cut(s)	8, 192
BspCNI	CTCAG	2 cut(s)	108, 315
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	90, 347
BspT104I	TTCGAA	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	348
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	9, 611
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	3 cut(s)	324, 325, 868
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	868
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	2 cut(s)	12, 503
BstACI	GRCGYC	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	474
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	113, 852
BstDEI	CTNAG	2 cut(s)	116, 302
BstDSI	CCRYGG	1 cut(s)	868
BstF5I	GGATG	4 cut(s)	29, 493, 864, 910
BstHHI	GCGC	2 cut(s)	273, 658
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	4 cut(s)	92, 149, 305, 917
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 268, 569, 578
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	2 cut(s)	37, 324
BstSFI	CTRYAG	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	4 cut(s)	255, 547, 557, 568
BstV2I	GAAGAC	2 cut(s)	251, 723
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	8, 192
BtgI	CCRYGG	1 cut(s)	868
BtsCI	GGATG	4 cut(s)	29, 493, 864, 910
Cac8I	GCNNGC	2 cut(s)	113, 852
CaiI	CAGNNNCTG	2 cut(s)	551, 563
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	2 cut(s)	273, 658
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	3 cut(s)	88, 190, 346
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	475, 918
CviAII	CATG	7 cut(s)	194, 290, 313, 667, 869, 899, 927
CviQI	GTAC	2 cut(s)	475, 918
DdeI	CTNAG	2 cut(s)	116, 302
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DraI	TTTAAA	1 cut(s)	798
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	12, 503
EarI	CTCTTC	2 cut(s)	12, 503
Eco130I	CCWWGG	1 cut(s)	868
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	2 cut(s)	88, 346
Eco88I	CYCGRG	1 cut(s)	620
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	711
EcoT14I	CCWWGG	1 cut(s)	868
ErhI	CCWWGG	1 cut(s)	868
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	7 cut(s)	197, 293, 316, 670, 872, 902, 930
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	7 cut(s)	193, 289, 312, 666, 868, 898, 926
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	6, 269, 546, 561, 582
FokI	GGATG	4 cut(s)	16, 500, 851, 917
Fsp4HI	GCNGC	5 cut(s)	6, 269, 546, 561, 582
FspI	TGCGCA	1 cut(s)	272
GlaI	GCGC	2 cut(s)	272, 657
GluI	GCNGC	5 cut(s)	6, 269, 546, 561, 582
GsuI	CTGGAG	1 cut(s)	556
HaeIII	GGCC	2 cut(s)	8, 192
HapII	CCGG	2 cut(s)	38, 349
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	273, 658
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	7 cut(s)	197, 293, 316, 670, 872, 902, 930
Hin6I	GCGC	2 cut(s)	271, 656
HinP1I	GCGC	2 cut(s)	271, 656
HincII	GTYRAC	2 cut(s)	384, 727
HindII	GTYRAC	2 cut(s)	384, 727
HinfI	GANTC	6 cut(s)	298, 511, 554, 599, 861, 909
HpaII	CCGG	2 cut(s)	38, 349
HphI	GGTGA	2 cut(s)	341, 622
Hpy166II	GTNNAC	3 cut(s)	384, 437, 727
Hpy188I	TCNGA	6 cut(s)	81, 88, 397, 414, 604, 715
Hpy188III	TCNNGA	8 cut(s)	68, 152, 256, 313, 458, 515, 535, 754
Hpy8I	GTNNAC	3 cut(s)	384, 437, 727
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4IV	ACGT	3 cut(s)	83, 235, 399
HpyCH4V	TGCA	4 cut(s)	437, 545, 584, 892
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 268, 569, 578
HpyF3I	CTNAG	2 cut(s)	116, 302
HpySE526I	ACGT	3 cut(s)	83, 235, 399
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	7 cut(s)	197, 293, 316, 670, 872, 902, 930
HspAI	GCGC	2 cut(s)	271, 656
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	205
Lsp1109I	GCAGC	4 cut(s)	255, 547, 557, 568
LweI	GCATC	2 cut(s)	346, 559
MaeII	ACGT	3 cut(s)	83, 235, 399
MaeIII	GTNAC	2 cut(s)	11, 403
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	9 cut(s)	29, 123, 256, 511, 520, 728, 820, 829, 839
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	8 cut(s)	75, 93, 251, 279, 308, 482, 799, 834
MlyI	GAGTC	3 cut(s)	307, 520, 608
MmeI	TCCRAC	2 cut(s)	66, 627
MnlI	CCTC	7 cut(s)	36, 97, 135, 181, 514, 634, 736
MseI	TTAA	3 cut(s)	162, 180, 797
MslI	CAYNNNNRTG	2 cut(s)	170, 903
MspA1I	CMGCKG	2 cut(s)	560, 915
MspI	CCGG	2 cut(s)	38, 349
MspR9I	CCNGG	2 cut(s)	39, 326
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	121, 268, 569, 578
NciI	CCSGG	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	868
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	7 cut(s)	197, 293, 316, 670, 872, 902, 930
NlaIV	GGNNCC	2 cut(s)	90, 347
NmuCI	GTSAC	1 cut(s)	403
NsbI	TGCGCA	1 cut(s)	272
NspI	RCATGY	1 cut(s)	670
NspV	TTCGAA	1 cut(s)	224
PagI	TCATGA	1 cut(s)	312
PasI	CCCWGGG	1 cut(s)	325
PctI	GAATGC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	554, 861, 909
PflFI	GACNNNGTC	1 cut(s)	722
PkrI	GCNGC	5 cut(s)	7, 270, 547, 562, 583
PleI	GAGTC	3 cut(s)	306, 519, 607
PpsI	GAGTC	3 cut(s)	306, 519, 607
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	90, 347
PspPI	GGNCC	3 cut(s)	88, 190, 346
PstNI	CAGNNNCTG	2 cut(s)	551, 563
PsyI	GACNNNGTC	1 cut(s)	722
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	2 cut(s)	476, 919
RsaNI	GTAC	2 cut(s)	475, 918
RseI	CAYNNNNRTG	2 cut(s)	170, 903
SaqAI	TTAA	3 cut(s)	162, 180, 797
SatI	GCNGC	5 cut(s)	6, 269, 546, 561, 582
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	3 cut(s)	88, 190, 346
SchI	GAGTC	3 cut(s)	307, 520, 608
ScrFI	CCNGG	2 cut(s)	39, 326
SduI	GDGCHC	1 cut(s)	439
SfaNI	GCATC	2 cut(s)	346, 559
SfcI	CTRYAG	1 cut(s)	564
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	2 cut(s)	88, 346
SmiMI	CAYNNNNRTG	2 cut(s)	170, 903
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
Sse9I	AATT	8 cut(s)	75, 93, 251, 279, 308, 482, 799, 834
SsiI	CCGC	2 cut(s)	5, 915
StyD4I	CCNGG	2 cut(s)	37, 324
StyI	CCWWGG	1 cut(s)	868
TaaI	ACNGT	1 cut(s)	423
TaiI	ACGT	3 cut(s)	86, 238, 402
TaqI	TCGA	2 cut(s)	224, 426
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	8 cut(s)	75, 93, 251, 279, 308, 482, 799, 834
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	554, 861, 909
Tru1I	TTAA	3 cut(s)	162, 180, 797
Tru9I	TTAA	3 cut(s)	162, 180, 797
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	4 cut(s)	268, 545, 560, 581
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	210, 301, 351, 673
TspGWI	ACGGA	2 cut(s)	22, 873
Tth111I	GACNNNGTC	1 cut(s)	722
VneI	GTGCAC	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	88, 346
XapI	RAATTY	2 cut(s)	251, 308
XceI	RCATGY	1 cut(s)	670
ZraI	GACGTC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.