Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012243

Physical Location & Seq

Genomic Coordinates Reverse (-)

82700784 .. 82701278

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG605100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAAGACAGGTATTCTGATTCCAGATGCTATTTTTACTGTACTCTTTCAAGTAATATGCAGTTACTGATTCTTTCCTTTCTCCTTCTTGAAGTATTCACGAAGCCAACGCTGCGCATTCTAATTGTCAGCGATGATATGAGCCTCAGTGAATTAATGATCGAAGCCCTGGGTGAATATGAAGTAAGGGACCAGCAAGATGCTGATTTTGTGTTGCTGCATCAATTGACAAACTTTTCAGACATTGTGACAGCTCTGAAAAACCAGTTCGATATAGGTTCACCTGCTGATGTCCTACTTCTTGACTTGGATACTTTGTACAAGGAATTGGATGAGATGGAGAAGATAAGGAAGAGTCAAGATGAGGAAAAGATGGTCTGGAGTATTGCAGCACCTGAATCAGCTGCTGTAGATGCCATAAGCAATCTAAATAAATGGCTCTTTGTTCTTATCTCAATCACTCCTTTTTATCTTTCAGTTTTATGCTGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.82

Weight (kDa)

4.2

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20480
malus_domestica	MD03G1011000.v1.1
prunus_persica	Prupe.2G113800_v2.0.a1 Prupe.6G011500_v2.0.a1
pyrus_communis	pycom03g00980
rosa_chinensis	RchiOBHm_Chr5g0081401
rosa_laevigata	RLG00000019067 RLG00000021682
rosa_multiflora	Rmu_sc0002735.1_g000021 Rmu_sc0005344.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002140 Rroxscaffold_2G00083930
rosa_rugosa	Rorug05G0476100
rosa_samantha	Rh2AG593500 Rh2BG605100 Rh2CG575900 Rh5BG552000
rosa_wichuraiana	Rw2G049420 Rw5G049060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	292
Acc16I	TGCGCA	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	292
AfaI	GTAC	2 cut(s)	43, 320
AgsI	TTSAA	2 cut(s)	51, 92
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	254, 404
AluI	AGCT	2 cut(s)	254, 404
AlwNI	CAGNNNCTG	3 cut(s)	67, 395, 407
ApeKI	GCWGC	5 cut(s)	112, 217, 389, 404, 486
AseI	ATTAAT	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	185, 273
AvaII	GGWCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	5 cut(s)	99, 204, 391, 401, 473
BccI	CCATC	2 cut(s)	331, 367
BciT130I	CCWGG	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	304
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	5 cut(s)	113, 218, 390, 405, 487
BlsI	GCNGC	5 cut(s)	114, 219, 391, 406, 488
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	4 cut(s)	17, 190, 229, 403
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	168, 169
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	168, 169
BseGI	GGATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	5 cut(s)	99, 204, 391, 401, 473
BslFI	GGGAC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	191
BspMI	ACCTGC	1 cut(s)	292
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	168, 169
BssMI	GATC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 413
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	5 cut(s)	99, 204, 391, 401, 473
BstV2I	GAAGAC	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	292
CaiI	CAGNNNCTG	3 cut(s)	67, 395, 407
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	42, 319
CviJI	RGCY	6 cut(s)	106, 144, 167, 254, 404, 439
CviKI_1	RGCY	6 cut(s)	106, 144, 167, 254, 404, 439
CviQI	GTAC	2 cut(s)	42, 319
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	168
FaiI	YATR	6 cut(s)	59, 140, 180, 275, 419, 484
FaqI	GGGAC	1 cut(s)	203
Fnu4HI	GCNGC	5 cut(s)	113, 218, 390, 405, 487
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	5 cut(s)	113, 218, 390, 405, 487
FspI	TGCGCA	1 cut(s)	116
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	5 cut(s)	113, 218, 390, 405, 487
GsuI	CTGGAG	1 cut(s)	400
HhaI	GCGC	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	4 cut(s)	20, 70, 355, 398
HphI	GGTGA	2 cut(s)	185, 273
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	3 cut(s)	19, 241, 258
Hpy188III	TCNNGA	6 cut(s)	24, 89, 100, 302, 359, 379
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	61, 220, 389, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 413
HpyF3I	CTNAG	1 cut(s)	146
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	8 cut(s)	37, 155, 182, 206, 278, 297, 364, 408
Lsp1109I	GCAGC	5 cut(s)	99, 204, 391, 401, 473
LweI	GCATC	4 cut(s)	17, 190, 229, 403
MaeIII	GTNAC	2 cut(s)	63, 247
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	3 cut(s)	17, 355, 364
MfeI	CAATTG	1 cut(s)	224
MluCI	AATT	4 cut(s)	123, 152, 224, 326
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	2 cut(s)	155, 358
MseI	TTAA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	112, 413
NdeII	GATC	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	247
NsbI	TGCGCA	1 cut(s)	116
PaqCI	CACCTGC	1 cut(s)	292
PasI	CCCWGGG	1 cut(s)	169
PctI	GAATGC	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	20, 70, 398
PkrI	GCNGC	5 cut(s)	114, 219, 391, 406, 488
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
PshBI	ATTAAT	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	190
PstNI	CAGNNNCTG	3 cut(s)	67, 395, 407
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	2 cut(s)	43, 320
RsaNI	GTAC	2 cut(s)	42, 319
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	5 cut(s)	113, 218, 390, 405, 487
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	6 cut(s)	14, 256, 280, 286, 397, 406
SfaNI	GCATC	4 cut(s)	17, 190, 229, 403
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	4 cut(s)	123, 152, 224, 326
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	162, 270
TasI	AATT	4 cut(s)	123, 152, 224, 326
TatI	WGTACW	2 cut(s)	41, 318
TfiI	GAWTC	3 cut(s)	20, 70, 398
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	5 cut(s)	112, 217, 389, 404, 486
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.